Wall clock time and date at job start Mon Mar 30 2020 06:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 120.00229 * 2 1 4 4 H 1.48505 * 109.46617 * 269.99759 * 3 2 1 5 5 H 1.48506 * 109.46803 * 29.99555 * 3 2 1 6 6 H 1.48498 * 109.47239 * 149.99888 * 3 2 1 7 7 C 1.37875 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00135 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99939 * 180.02562 * 7 2 1 10 10 H 1.09002 * 109.52452 * 60.00017 * 9 7 2 11 11 C 1.53119 * 109.57327 * 299.83957 * 9 7 2 12 12 C 1.53038 * 109.27882 * 297.72211 * 11 9 7 13 13 N 1.46852 * 109.51870 * 300.81814 * 12 11 9 14 14 C 1.46845 * 111.19842 * 61.74428 * 13 12 11 15 15 H 1.08999 * 109.45709 * 58.27127 * 14 13 12 16 16 C 1.52997 * 109.45877 * 178.23862 * 14 13 12 17 17 C 1.52582 * 109.22700 * 61.29281 * 16 14 13 18 18 C 1.53094 * 109.95429 * 169.00014 * 17 16 14 19 19 S 1.81752 * 108.84203 * 63.02441 * 18 17 16 20 20 C 1.81740 * 102.22019 * 306.73138 * 19 18 17 21 21 C 1.52584 * 109.23044 * 300.05201 * 16 14 13 22 22 C 1.53032 * 109.52093 * 298.25529 * 14 13 12 23 23 H 0.97004 * 119.99927 * 0.02562 * 1 2 3 24 24 H 1.09008 * 109.50343 * 57.66022 * 11 9 7 25 25 H 1.08998 * 109.50427 * 177.77856 * 11 9 7 26 26 H 1.09000 * 109.46419 * 180.80819 * 12 11 9 27 27 H 1.08994 * 109.45868 * 60.83010 * 12 11 9 28 28 H 1.00900 * 110.99344 * 185.84392 * 13 12 11 29 29 H 1.09000 * 109.21717 * 180.64977 * 16 14 13 30 30 H 1.08999 * 109.38565 * 289.14641 * 17 16 14 31 31 H 1.08994 * 109.39247 * 48.85199 * 17 16 14 32 32 H 1.09001 * 109.57976 * 303.21362 * 18 17 16 33 33 H 1.09002 * 109.57561 * 182.83026 * 18 17 16 34 34 H 1.08993 * 109.57975 * 293.45858 * 20 19 18 35 35 H 1.09005 * 109.68507 * 173.13481 * 20 19 18 36 36 H 1.09004 * 109.38899 * 311.14899 * 21 16 14 37 37 H 1.09000 * 109.38586 * 70.84728 * 21 16 14 38 38 H 1.08998 * 109.50785 * 299.23475 * 22 14 13 39 39 H 1.09007 * 109.53251 * 179.13847 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0044 -1.1940 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8754 -0.6802 0.8908 11 6 4.0249 -0.4765 -1.2503 12 6 3.5615 -1.2371 -2.4948 13 7 4.0773 -2.6113 -2.4504 14 6 3.5599 -3.3352 -1.2822 15 1 2.4704 -3.3470 -1.3157 16 6 4.0858 -4.7718 -1.2988 17 6 5.6095 -4.7500 -1.2201 18 6 6.1395 -6.1626 -0.9607 19 16 5.6935 -7.2244 -2.3667 20 6 3.8988 -6.9655 -2.4901 21 6 3.6210 -5.4625 -2.5774 22 6 4.0232 -2.6372 -0.0016 23 1 -0.4850 0.8401 -0.0004 24 1 3.6290 0.5388 -1.2759 25 1 5.1142 -0.4425 -1.2291 26 1 3.9375 -0.7368 -3.3872 27 1 2.4721 -1.2588 -2.5224 28 1 3.8655 -3.1047 -3.3046 29 1 3.6902 -5.3087 -0.4366 30 1 6.0151 -4.3785 -2.1611 31 1 5.9206 -4.0921 -0.4087 32 1 5.6934 -6.5583 -0.0482 33 1 7.2241 -6.1322 -0.8556 34 1 3.4089 -7.3768 -1.6077 35 1 3.5171 -7.4599 -3.3835 36 1 2.5512 -5.2993 -2.7085 37 1 4.1565 -5.0444 -3.4298 38 1 5.1124 -2.6372 0.0393 39 1 3.6265 -3.1656 0.8654 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259750361.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:56 Heat of formation + Delta-G solvation = -34.458518 kcal Electronic energy + Delta-G solvation = -18092.350102 eV Core-core repulsion = 15545.131200 eV Total energy + Delta-G solvation = -2547.218902 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.51170 -37.49383 -34.69792 -32.94632 -32.38459 -31.77688 -27.57690 -27.16645 -24.15073 -23.78017 -23.24795 -21.04751 -20.16838 -18.07453 -17.77724 -17.49941 -16.44528 -15.99691 -15.47356 -15.39255 -14.98098 -14.71682 -14.58465 -14.38541 -14.08428 -13.75673 -13.63009 -13.57941 -13.19514 -12.95156 -12.43275 -12.29697 -12.12756 -11.90939 -11.75721 -11.57864 -11.20080 -11.10512 -10.88759 -10.80460 -10.63079 -10.43989 -9.20113 -8.60634 -8.27607 -6.28085 0.92082 1.28780 1.34865 1.44581 1.65854 2.32926 3.08829 3.38362 3.66562 3.81001 3.90186 4.12884 4.24189 4.28993 4.32028 4.43945 4.44851 4.59223 4.62830 4.70278 4.79557 4.81197 4.85579 4.96147 5.02934 5.09391 5.10967 5.20487 5.24740 5.34462 5.37551 5.48706 5.52473 5.59225 5.79764 6.22952 6.33974 6.68830 6.77182 7.36100 8.88907 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.042294 B = 0.005635 C = 0.005483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.878108 B = 4967.785871 C = 5105.287470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.011 3.989 3 Si 0.944 3.056 4 H -0.268 1.268 5 H -0.304 1.304 6 H -0.250 1.250 7 C -0.496 4.496 8 H 0.032 0.968 9 C 0.000 4.000 10 H 0.018 0.982 11 C -0.114 4.114 12 C 0.074 3.926 13 N -0.666 5.666 14 C 0.110 3.890 15 H 0.012 0.988 16 C -0.081 4.081 17 C -0.101 4.101 18 C -0.071 4.071 19 S -0.304 6.304 20 C -0.068 4.068 21 C -0.115 4.115 22 C -0.086 4.086 23 H 0.262 0.738 24 H 0.032 0.968 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.009 0.991 28 H 0.341 0.659 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.113 0.887 34 H 0.084 0.916 35 H 0.114 0.886 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.178 -10.649 -5.092 16.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.185 4.185 3 Si 0.773 3.227 4 H -0.194 1.194 5 H -0.233 1.233 6 H -0.174 1.174 7 C -0.534 4.534 8 H 0.050 0.950 9 C -0.019 4.019 10 H 0.036 0.964 11 C -0.152 4.152 12 C -0.056 4.056 13 N -0.298 5.298 14 C 0.000 4.000 15 H 0.030 0.970 16 C -0.100 4.100 17 C -0.139 4.139 18 C -0.219 4.219 19 S -0.079 6.079 20 C -0.216 4.216 21 C -0.154 4.154 22 C -0.124 4.124 23 H 0.071 0.929 24 H 0.050 0.950 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.028 0.972 28 H 0.160 0.840 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.132 0.868 34 H 0.103 0.897 35 H 0.132 0.868 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 13.283 -11.040 -5.403 18.098 hybrid contribution -2.279 1.608 0.674 2.869 sum 11.004 -9.433 -4.730 15.246 Atomic orbital electron populations 1.70052 1.08131 1.27627 1.53612 1.25803 0.95258 1.02685 0.94754 0.85903 0.79088 0.79279 0.78470 1.19385 1.23264 1.17376 1.21238 0.91202 0.92401 1.48522 0.94976 1.19271 0.93879 0.94917 0.93839 0.96372 1.21802 0.99553 0.97156 0.96642 1.21636 0.96386 0.90003 0.97535 1.60427 1.62046 1.02194 1.05125 1.21248 0.95172 0.92279 0.91301 0.97012 1.21126 0.96630 0.94165 0.98036 1.21631 0.93877 0.94584 1.03827 1.23515 1.05040 0.96385 0.96927 1.86805 1.11434 1.63150 1.46495 1.23393 0.92723 0.99110 1.06346 1.21733 1.01617 0.93520 0.98502 1.21457 0.99811 0.95155 0.95980 0.92916 0.94971 0.91372 0.90518 0.97235 0.84020 0.91614 0.90272 0.90376 0.89700 0.86832 0.89736 0.86801 0.91524 0.89974 0.90768 0.93578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.32 13.96 21.45 0.30 -59.02 16 2 C 0.01 0.64 5.45 84.65 0.46 1.10 16 3 Si 0.94 45.03 24.40 68.60 1.67 46.70 16 4 H -0.27 -12.15 6.85 99.48 0.68 -11.47 16 5 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 6 H -0.25 -11.11 6.53 99.48 0.65 -10.46 16 7 C -0.50 -27.28 7.32 25.60 0.19 -27.09 16 8 H 0.03 1.97 7.12 -2.91 -0.02 1.95 16 9 C 0.00 -0.01 2.19 -11.46 -0.03 -0.03 16 10 H 0.02 0.84 7.20 -2.39 -0.02 0.82 16 11 C -0.11 -4.61 5.10 30.65 0.16 -4.45 16 12 C 0.07 2.76 6.34 86.32 0.55 3.30 16 13 N -0.67 -20.95 5.97 -491.69 -2.93 -23.88 16 14 C 0.11 3.70 1.99 44.94 0.09 3.79 16 15 H 0.01 0.50 6.79 -2.39 -0.02 0.48 16 16 C -0.08 -2.06 1.81 -11.07 -0.02 -2.08 16 17 C -0.10 -2.27 4.64 30.49 0.14 -2.12 16 18 C -0.07 -1.39 6.45 72.01 0.46 -0.92 16 19 S -0.30 -6.60 22.33 -56.49 -1.26 -7.86 16 20 C -0.07 -1.33 6.45 72.01 0.46 -0.87 16 21 C -0.11 -2.56 4.41 30.49 0.13 -2.43 16 22 C -0.09 -3.19 4.49 30.64 0.14 -3.05 16 23 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 24 H 0.03 1.39 3.27 -2.38 -0.01 1.38 16 25 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 26 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 27 H 0.01 0.42 7.31 -2.39 -0.02 0.40 16 28 H 0.34 9.38 7.01 -89.69 -0.63 8.75 16 29 H 0.07 1.74 8.08 -2.39 -0.02 1.72 16 30 H 0.08 1.89 7.87 -2.39 -0.02 1.87 16 31 H 0.08 1.82 5.80 -2.39 -0.01 1.81 16 32 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.11 1.94 8.14 -2.38 -0.02 1.92 16 36 H 0.07 1.58 8.09 -2.38 -0.02 1.56 16 37 H 0.08 1.80 6.99 -2.39 -0.02 1.78 16 38 H 0.07 2.39 6.12 -2.39 -0.01 2.38 16 39 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 Total: -1.00 -62.50 290.75 0.84 -61.66 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 0.32 Total: 17.26 kcal Atomic # 6 Polarization: -37.60 SS G_CDS: 2.74 Total: -34.86 kcal Atomic # 7 Polarization: -80.27 SS G_CDS: -2.64 Total: -82.90 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.67 Total: 46.70 kcal Atomic # 16 Polarization: -6.60 SS G_CDS: -1.26 Total: -7.86 kcal Total: -62.50 0.84 -61.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259750361.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.201 kcal (2) G-P(sol) polarization free energy of solvation -62.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds