Wall clock time and date at job start Mon Mar 30 2020 06:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00661 * 2 1 4 4 H 1.48507 * 109.47044 * 264.96911 * 3 2 1 5 5 H 1.48497 * 109.46961 * 24.96364 * 3 2 1 6 6 H 1.48492 * 109.47370 * 144.96869 * 3 2 1 7 7 C 1.37878 * 119.99783 * 180.02562 * 2 1 3 8 8 H 1.08010 * 120.00122 * 5.94577 * 7 2 1 9 9 C 1.50699 * 120.00484 * 185.94456 * 7 2 1 10 10 H 1.08998 * 109.45973 * 327.27623 * 9 7 2 11 11 C 1.53048 * 109.45060 * 87.24307 * 9 7 2 12 12 C 1.53115 * 109.27633 * 179.19093 * 11 9 7 13 13 C 1.53116 * 109.16472 * 302.34572 * 12 11 9 14 14 C 1.53041 * 109.27790 * 57.65383 * 13 12 11 15 15 N 1.46843 * 109.46658 * 207.28692 * 9 7 2 16 16 C 1.46904 * 110.99840 * 54.15780 * 15 9 7 17 17 C 1.52570 * 109.22990 * 191.55885 * 16 15 9 18 18 C 1.53120 * 109.95035 * 168.96317 * 17 16 15 19 19 S 1.81743 * 108.80617 * 63.08476 * 18 17 16 20 20 C 1.81743 * 102.22530 * 306.71857 * 19 18 17 21 21 C 1.52585 * 109.22471 * 70.36092 * 16 15 9 22 22 H 0.97003 * 119.99283 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.49912 * 299.13376 * 11 9 7 24 24 H 1.08994 * 109.50464 * 59.25024 * 11 9 7 25 25 H 1.08998 * 109.52062 * 182.43525 * 12 11 9 26 26 H 1.09006 * 109.57231 * 62.28636 * 12 11 9 27 27 H 1.08995 * 109.50011 * 297.71687 * 13 12 11 28 28 H 1.08996 * 109.50665 * 177.59517 * 13 12 11 29 29 H 1.08992 * 109.46241 * 180.80553 * 14 13 12 30 30 H 1.08999 * 109.44975 * 60.83089 * 14 13 12 31 31 H 1.08999 * 109.22436 * 310.96761 * 16 15 9 32 32 H 1.09008 * 109.39478 * 289.15569 * 17 16 15 33 33 H 1.09002 * 109.39173 * 48.85526 * 17 16 15 34 34 H 1.09001 * 109.60557 * 303.28130 * 18 17 16 35 35 H 1.08995 * 109.68353 * 182.94143 * 18 17 16 36 36 H 1.09003 * 109.57370 * 293.45996 * 20 19 18 37 37 H 1.09000 * 109.57907 * 173.07593 * 20 19 18 38 38 H 1.08999 * 109.39411 * 311.14850 * 21 16 15 39 39 H 1.09002 * 109.38559 * 70.95017 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.6032 1.9849 -1.3947 5 1 1.3977 2.6810 0.5909 6 1 3.4896 1.4730 0.8036 7 6 2.0045 -1.1941 -0.0005 8 1 1.4688 -2.1269 -0.0978 9 6 3.5054 -1.1978 0.1346 10 1 3.9150 -0.3063 -0.3402 11 6 3.8835 -1.2051 1.6176 12 6 5.4087 -1.2293 1.7503 13 6 5.9572 -2.4594 1.0219 14 6 5.5189 -2.4158 -0.4438 15 7 4.0524 -2.3946 -0.5170 16 6 3.5934 -2.4923 -1.9091 17 6 3.9392 -3.8739 -2.4565 18 6 3.2350 -4.0956 -3.7979 19 16 3.8577 -2.8779 -4.9948 20 6 3.6031 -1.3083 -4.1148 21 6 4.2648 -1.4007 -2.7373 22 1 -0.4849 0.8401 0.0004 23 1 3.4906 -0.3088 2.0977 24 1 3.4626 -2.0892 2.0962 25 1 5.6819 -1.2781 2.8043 26 1 5.8282 -0.3262 1.3068 27 1 5.5688 -3.3632 1.4911 28 1 7.0458 -2.4593 1.0763 29 1 5.8958 -3.2975 -0.9619 30 1 5.9191 -1.5185 -0.9158 31 1 2.5128 -2.3536 -1.9413 32 1 5.0177 -3.9482 -2.5965 33 1 3.6145 -4.6356 -1.7477 34 1 2.1599 -3.9674 -3.6722 35 1 3.4428 -5.1026 -4.1596 36 1 2.5351 -1.1257 -3.9953 37 1 4.0534 -0.4940 -4.6825 38 1 4.1663 -0.4445 -2.2236 39 1 5.3215 -1.6383 -2.8603 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259752296.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:40 Heat of formation + Delta-G solvation = -13.450180 kcal Electronic energy + Delta-G solvation = -18467.557579 eV Core-core repulsion = 15921.249667 eV Total energy + Delta-G solvation = -2546.307912 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.13632 -35.67877 -32.89801 -31.46785 -31.12010 -30.24397 -26.13243 -24.93721 -23.03501 -22.82046 -21.07663 -19.81667 -18.37338 -16.92028 -16.49277 -15.77906 -14.47332 -14.33986 -14.04090 -13.61167 -13.52214 -13.44049 -13.28474 -12.93229 -12.59784 -12.54906 -12.13699 -11.87911 -11.49519 -11.25691 -11.10072 -10.93227 -10.65379 -10.43805 -10.24790 -10.02867 -9.94425 -9.81369 -9.61009 -9.30221 -8.95266 -8.61933 -7.47195 -7.31925 -6.15441 -4.13289 2.05756 2.78088 3.18676 3.29484 3.30962 4.33049 4.59842 5.04563 5.14244 5.22562 5.29905 5.37226 5.42102 5.49465 5.58507 5.65317 5.74834 5.83467 5.99254 6.01193 6.11684 6.15372 6.21022 6.22342 6.27728 6.36088 6.44288 6.54124 6.59553 6.74323 6.78865 6.86983 7.05842 7.28030 7.60631 7.97040 8.08245 8.60745 8.94122 9.48601 10.97286 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.017956 B = 0.009909 C = 0.007543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.991501 B = 2825.071428 C = 3711.137675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.075 3.925 3 Si 0.864 3.136 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.504 4.504 8 H 0.081 0.919 9 C 0.188 3.812 10 H 0.000 1.000 11 C -0.106 4.106 12 C -0.126 4.126 13 C -0.111 4.111 14 C 0.050 3.950 15 N -0.518 5.518 16 C 0.085 3.915 17 C -0.111 4.111 18 C -0.071 4.071 19 S -0.294 6.294 20 C -0.068 4.068 21 C -0.147 4.147 22 H 0.264 0.736 23 H 0.053 0.947 24 H 0.063 0.937 25 H 0.049 0.951 26 H 0.047 0.953 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.023 0.977 31 H 0.107 0.893 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.737 -4.346 -3.927 11.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.127 4.127 3 Si 0.691 3.309 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.187 1.187 7 C -0.542 4.542 8 H 0.099 0.901 9 C 0.081 3.919 10 H 0.018 0.982 11 C -0.145 4.145 12 C -0.164 4.164 13 C -0.149 4.149 14 C -0.079 4.079 15 N -0.241 5.241 16 C -0.024 4.024 17 C -0.150 4.150 18 C -0.220 4.220 19 S -0.068 6.068 20 C -0.217 4.217 21 C -0.188 4.188 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.082 0.918 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.041 0.959 31 H 0.125 0.875 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.117 0.883 36 H 0.107 0.893 37 H 0.113 0.887 38 H 0.093 0.907 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.808 -4.805 -4.670 11.878 hybrid contribution 0.194 2.044 0.731 2.180 sum 10.002 -2.761 -3.939 11.099 Atomic orbital electron populations 1.69891 1.06111 1.26905 1.50339 1.24928 0.94602 0.98538 0.94646 0.87089 0.80622 0.84424 0.78774 1.20339 1.21402 1.18740 1.20894 0.88734 0.94617 1.49987 0.90145 1.19654 0.95615 0.86331 0.90331 0.98215 1.21826 0.92125 1.01382 0.99167 1.21702 0.98458 0.97270 0.98947 1.21523 0.98497 0.99024 0.95841 1.22088 0.90326 0.99347 0.96122 1.62153 1.05888 1.42302 1.13721 1.21580 1.02249 0.91514 0.87016 1.21758 0.99997 0.98780 0.94479 1.23409 1.03078 0.99081 0.96437 1.86506 1.84989 1.04966 1.30387 1.23368 1.04726 0.95173 0.98407 1.22360 0.99910 1.01998 0.94519 0.92597 0.92807 0.91831 0.93174 0.93428 0.91536 0.92960 0.91866 0.95897 0.87525 0.91709 0.90077 0.89580 0.88344 0.89333 0.88701 0.90704 0.91660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.18 13.96 55.43 0.77 -25.40 16 2 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.86 20.70 26.36 -169.99 -4.48 16.22 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.26 -6.07 6.24 56.52 0.35 -5.72 16 7 C -0.50 -13.21 7.35 -34.44 -0.25 -13.46 16 8 H 0.08 2.34 7.79 -52.48 -0.41 1.93 16 9 C 0.19 4.17 1.08 -68.87 -0.07 4.10 16 10 H 0.00 0.01 4.23 -51.93 -0.22 -0.21 16 11 C -0.11 -2.22 5.14 -26.65 -0.14 -2.35 16 12 C -0.13 -2.16 6.00 -26.61 -0.16 -2.32 16 13 C -0.11 -1.72 6.09 -26.65 -0.16 -1.89 16 14 C 0.05 0.82 4.57 -3.83 -0.02 0.80 16 15 N -0.52 -10.03 4.41 -220.66 -0.97 -11.01 16 16 C 0.09 1.55 1.72 -68.14 -0.12 1.43 16 17 C -0.11 -1.67 4.70 -26.89 -0.13 -1.80 16 18 C -0.07 -1.00 6.46 37.22 0.24 -0.76 16 19 S -0.29 -4.43 22.33 -107.50 -2.40 -6.83 16 20 C -0.07 -1.08 6.45 37.21 0.24 -0.84 16 21 C -0.15 -2.53 4.06 -26.89 -0.11 -2.64 16 22 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 23 H 0.05 1.17 6.96 -51.93 -0.36 0.81 16 24 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.95 6.49 -51.93 -0.34 0.61 16 30 H 0.02 0.39 6.80 -51.93 -0.35 0.04 16 31 H 0.11 2.30 6.28 -51.93 -0.33 1.97 16 32 H 0.06 0.94 6.88 -51.92 -0.36 0.58 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 37 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.07 1.45 6.40 -51.93 -0.33 1.12 16 39 H 0.06 1.05 7.01 -51.93 -0.36 0.69 16 LS Contribution 295.18 15.07 4.45 4.45 Total: -1.00 -27.40 295.18 -9.88 -37.28 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -6.47 Total: 3.06 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: -0.77 Total: -17.77 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: -0.20 Total: -36.41 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.48 Total: 16.22 kcal Atomic # 16 Polarization: -4.43 SS G_CDS: -2.40 Total: -6.83 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.40 -9.88 -37.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259752296.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.827 kcal (2) G-P(sol) polarization free energy of solvation -27.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds