Wall clock time and date at job start Mon Mar 30 2020 06:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00661 * 2 1 4 4 H 1.48507 * 109.47044 * 264.96911 * 3 2 1 5 5 H 1.48497 * 109.46961 * 24.96364 * 3 2 1 6 6 H 1.48492 * 109.47370 * 144.96869 * 3 2 1 7 7 C 1.37878 * 119.99783 * 180.02562 * 2 1 3 8 8 H 1.08010 * 120.00122 * 5.94577 * 7 2 1 9 9 C 1.50699 * 120.00484 * 185.94456 * 7 2 1 10 10 H 1.08998 * 109.45973 * 327.27623 * 9 7 2 11 11 C 1.53048 * 109.45060 * 87.24307 * 9 7 2 12 12 C 1.53115 * 109.27633 * 179.19093 * 11 9 7 13 13 C 1.53116 * 109.16472 * 302.34572 * 12 11 9 14 14 C 1.53041 * 109.27790 * 57.65383 * 13 12 11 15 15 N 1.46843 * 109.46658 * 207.28692 * 9 7 2 16 16 C 1.46904 * 110.99840 * 54.15780 * 15 9 7 17 17 C 1.52570 * 109.22990 * 191.55885 * 16 15 9 18 18 C 1.53120 * 109.95035 * 168.96317 * 17 16 15 19 19 S 1.81743 * 108.80617 * 63.08476 * 18 17 16 20 20 C 1.81743 * 102.22530 * 306.71857 * 19 18 17 21 21 C 1.52585 * 109.22471 * 70.36092 * 16 15 9 22 22 H 0.97003 * 119.99283 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.49912 * 299.13376 * 11 9 7 24 24 H 1.08994 * 109.50464 * 59.25024 * 11 9 7 25 25 H 1.08998 * 109.52062 * 182.43525 * 12 11 9 26 26 H 1.09006 * 109.57231 * 62.28636 * 12 11 9 27 27 H 1.08995 * 109.50011 * 297.71687 * 13 12 11 28 28 H 1.08996 * 109.50665 * 177.59517 * 13 12 11 29 29 H 1.08992 * 109.46241 * 180.80553 * 14 13 12 30 30 H 1.08999 * 109.44975 * 60.83089 * 14 13 12 31 31 H 1.08999 * 109.22436 * 310.96761 * 16 15 9 32 32 H 1.09008 * 109.39478 * 289.15569 * 17 16 15 33 33 H 1.09002 * 109.39173 * 48.85526 * 17 16 15 34 34 H 1.09001 * 109.60557 * 303.28130 * 18 17 16 35 35 H 1.08995 * 109.68353 * 182.94143 * 18 17 16 36 36 H 1.09003 * 109.57370 * 293.45996 * 20 19 18 37 37 H 1.09000 * 109.57907 * 173.07593 * 20 19 18 38 38 H 1.08999 * 109.39411 * 311.14850 * 21 16 15 39 39 H 1.09002 * 109.38559 * 70.95017 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.6032 1.9849 -1.3947 5 1 1.3977 2.6810 0.5909 6 1 3.4896 1.4730 0.8036 7 6 2.0045 -1.1941 -0.0005 8 1 1.4688 -2.1269 -0.0978 9 6 3.5054 -1.1978 0.1346 10 1 3.9150 -0.3063 -0.3402 11 6 3.8835 -1.2051 1.6176 12 6 5.4087 -1.2293 1.7503 13 6 5.9572 -2.4594 1.0219 14 6 5.5189 -2.4158 -0.4438 15 7 4.0524 -2.3946 -0.5170 16 6 3.5934 -2.4923 -1.9091 17 6 3.9392 -3.8739 -2.4565 18 6 3.2350 -4.0956 -3.7979 19 16 3.8577 -2.8779 -4.9948 20 6 3.6031 -1.3083 -4.1148 21 6 4.2648 -1.4007 -2.7373 22 1 -0.4849 0.8401 0.0004 23 1 3.4906 -0.3088 2.0977 24 1 3.4626 -2.0892 2.0962 25 1 5.6819 -1.2781 2.8043 26 1 5.8282 -0.3262 1.3068 27 1 5.5688 -3.3632 1.4911 28 1 7.0458 -2.4593 1.0763 29 1 5.8958 -3.2975 -0.9619 30 1 5.9191 -1.5185 -0.9158 31 1 2.5128 -2.3536 -1.9413 32 1 5.0177 -3.9482 -2.5965 33 1 3.6145 -4.6356 -1.7477 34 1 2.1599 -3.9674 -3.6722 35 1 3.4428 -5.1026 -4.1596 36 1 2.5351 -1.1257 -3.9953 37 1 4.0534 -0.4940 -4.6825 38 1 4.1663 -0.4445 -2.2236 39 1 5.3215 -1.6383 -2.8603 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259752296.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:39 Heat of formation + Delta-G solvation = -29.659651 kcal Electronic energy + Delta-G solvation = -18468.260474 eV Core-core repulsion = 15921.249667 eV Total energy + Delta-G solvation = -2547.010807 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.63434 -37.08178 -34.86969 -32.87644 -32.44925 -31.92782 -27.68173 -26.62323 -24.44733 -24.14153 -22.70233 -21.26512 -19.87560 -18.93754 -17.76994 -17.32345 -16.17141 -15.76359 -15.62553 -14.99347 -14.90658 -14.85792 -14.62560 -14.52764 -14.38208 -13.81321 -13.54981 -13.33279 -12.94687 -12.86801 -12.55890 -12.48692 -12.43873 -12.01713 -11.71925 -11.63454 -11.52956 -11.33911 -11.06125 -10.77155 -10.69276 -10.58947 -8.87967 -8.67795 -8.29760 -6.29760 0.84187 1.25592 1.29814 1.38314 1.55074 2.29623 3.02474 3.18888 3.73102 3.91212 4.03888 4.05629 4.13992 4.18588 4.28038 4.28392 4.48760 4.51737 4.57552 4.64648 4.73614 4.78811 4.85207 4.85872 4.96724 4.99857 5.02892 5.16594 5.21893 5.24365 5.35812 5.37739 5.48614 5.57024 5.76900 6.12067 6.45545 6.74877 6.81085 7.35507 8.86919 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.017956 B = 0.009909 C = 0.007543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.991501 B = 2825.071428 C = 3711.137675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.021 3.979 3 Si 0.921 3.079 4 H -0.271 1.271 5 H -0.289 1.289 6 H -0.245 1.245 7 C -0.492 4.492 8 H 0.036 0.964 9 C 0.193 3.807 10 H -0.006 1.006 11 C -0.108 4.108 12 C -0.121 4.121 13 C -0.107 4.107 14 C 0.047 3.953 15 N -0.528 5.528 16 C 0.086 3.914 17 C -0.100 4.100 18 C -0.070 4.070 19 S -0.281 6.281 20 C -0.071 4.071 21 C -0.139 4.139 22 H 0.264 0.736 23 H 0.037 0.963 24 H 0.051 0.949 25 H 0.072 0.928 26 H 0.049 0.951 27 H 0.065 0.935 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.024 0.976 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.128 0.872 36 H 0.066 0.934 37 H 0.111 0.889 38 H 0.049 0.951 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.038 -4.832 -4.337 14.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.177 4.177 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.216 1.216 6 H -0.169 1.169 7 C -0.531 4.531 8 H 0.054 0.946 9 C 0.086 3.914 10 H 0.012 0.988 11 C -0.147 4.147 12 C -0.158 4.158 13 C -0.145 4.145 14 C -0.081 4.081 15 N -0.251 5.251 16 C -0.023 4.023 17 C -0.139 4.139 18 C -0.218 4.218 19 S -0.056 6.056 20 C -0.220 4.220 21 C -0.179 4.179 22 H 0.073 0.927 23 H 0.056 0.944 24 H 0.069 0.931 25 H 0.091 0.909 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.042 0.958 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.146 0.854 36 H 0.085 0.915 37 H 0.130 0.870 38 H 0.068 0.932 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 13.136 -5.307 -5.084 15.052 hybrid contribution -0.884 2.074 0.840 2.406 sum 12.252 -3.233 -4.244 13.363 Atomic orbital electron populations 1.70037 1.07912 1.27661 1.52913 1.25647 0.95194 1.02032 0.94795 0.86154 0.79900 0.80141 0.79244 1.19624 1.21553 1.16890 1.21050 0.91157 0.92681 1.48199 0.94605 1.19461 0.92751 0.87467 0.91755 0.98846 1.21738 0.95485 1.00034 0.97436 1.21655 0.94958 0.98378 1.00858 1.21541 1.00531 0.97950 0.94460 1.22238 0.87857 1.00420 0.97547 1.62091 1.08233 1.40512 1.14304 1.21501 0.99640 0.94021 0.87102 1.21651 1.01061 0.96403 0.94773 1.23460 1.02251 1.00346 0.95785 1.86460 1.84648 1.04130 1.30349 1.23315 1.03431 0.96889 0.98328 1.22252 1.00861 1.00214 0.94587 0.92734 0.94417 0.93063 0.90908 0.93203 0.91613 0.89473 0.89563 0.95786 0.92132 0.89910 0.90121 0.90793 0.85426 0.91487 0.87046 0.93206 0.89765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.99 13.96 21.45 0.30 -57.69 16 2 C 0.02 1.19 5.47 84.66 0.46 1.65 16 3 Si 0.92 43.50 26.36 68.60 1.81 45.30 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 6 H -0.25 -10.80 6.24 99.48 0.62 -10.18 16 7 C -0.49 -27.00 7.35 25.60 0.19 -26.81 16 8 H 0.04 2.24 7.79 -2.91 -0.02 2.21 16 9 C 0.19 8.64 1.08 44.20 0.05 8.68 16 10 H -0.01 -0.27 4.23 -2.39 -0.01 -0.28 16 11 C -0.11 -4.44 5.14 30.65 0.16 -4.28 16 12 C -0.12 -3.78 6.00 30.67 0.18 -3.60 16 13 C -0.11 -2.91 6.09 30.65 0.19 -2.72 16 14 C 0.05 1.41 4.57 86.33 0.39 1.80 16 15 N -0.53 -20.10 4.41 -852.02 -3.76 -23.86 16 16 C 0.09 3.13 1.72 44.63 0.08 3.20 16 17 C -0.10 -2.83 4.70 30.49 0.14 -2.68 16 18 C -0.07 -1.83 6.46 72.02 0.47 -1.37 16 19 S -0.28 -7.93 22.33 -56.49 -1.26 -9.19 16 20 C -0.07 -2.20 6.45 72.02 0.46 -1.74 16 21 C -0.14 -4.63 4.06 30.49 0.12 -4.50 16 22 H 0.26 15.31 8.31 -92.71 -0.77 14.53 16 23 H 0.04 1.62 6.96 -2.39 -0.02 1.61 16 24 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 25 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 27 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.09 2.22 6.49 -2.39 -0.02 2.20 16 30 H 0.02 0.73 6.80 -2.39 -0.02 0.71 16 31 H 0.06 2.75 6.28 -2.39 -0.01 2.74 16 32 H 0.08 2.08 6.88 -2.38 -0.02 2.07 16 33 H 0.08 2.31 8.14 -2.39 -0.02 2.30 16 34 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.13 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 38 H 0.05 1.91 6.40 -2.39 -0.02 1.89 16 39 H 0.08 2.48 7.01 -2.39 -0.02 2.47 16 Total: -1.00 -61.71 295.18 0.91 -60.81 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 0.92 Total: 16.98 kcal Atomic # 6 Polarization: -35.26 SS G_CDS: 2.90 Total: -32.36 kcal Atomic # 7 Polarization: -78.08 SS G_CDS: -3.46 Total: -81.54 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 1.81 Total: 45.30 kcal Atomic # 16 Polarization: -7.93 SS G_CDS: -1.26 Total: -9.19 kcal Total: -61.71 0.91 -60.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259752296.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.147 kcal (2) G-P(sol) polarization free energy of solvation -61.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds