Wall clock time and date at job start Mon Mar 30 2020 06:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99335 * 2 1 4 4 H 1.48501 * 109.47180 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47370 * 299.99890 * 3 2 1 6 6 H 1.48498 * 109.47588 * 60.00470 * 3 2 1 7 7 C 1.37869 * 120.00543 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00241 * 175.28877 * 7 2 1 9 9 C 1.50703 * 119.99960 * 355.29539 * 7 2 1 10 10 H 1.08995 * 109.46068 * 35.21281 * 9 7 2 11 11 C 1.53041 * 109.45664 * 275.24436 * 9 7 2 12 12 C 1.53123 * 109.27114 * 180.80486 * 11 9 7 13 13 C 1.53119 * 109.16388 * 57.65930 * 12 11 9 14 14 C 1.53039 * 109.27461 * 302.34340 * 13 12 11 15 15 N 1.46842 * 109.52827 * 59.17715 * 14 13 12 16 16 C 1.46898 * 111.00314 * 174.15922 * 15 14 13 17 17 C 1.52586 * 109.22273 * 59.81029 * 16 15 14 18 18 C 1.53117 * 109.94403 * 168.95833 * 17 16 15 19 19 S 1.81747 * 108.80446 * 63.08772 * 18 17 16 20 20 C 1.81745 * 102.22216 * 306.71122 * 19 18 17 21 21 C 1.52576 * 109.22692 * 298.61757 * 16 15 14 22 22 H 0.97006 * 119.98853 * 185.33546 * 1 2 3 23 23 H 1.08998 * 109.50173 * 300.74183 * 11 9 7 24 24 H 1.09000 * 109.50326 * 60.86571 * 11 9 7 25 25 H 1.09002 * 109.52587 * 297.74696 * 12 11 9 26 26 H 1.09007 * 109.51624 * 177.56113 * 12 11 9 27 27 H 1.09002 * 109.50524 * 182.40223 * 13 12 11 28 28 H 1.08994 * 109.50385 * 62.27748 * 13 12 11 29 29 H 1.09007 * 109.46361 * 299.16223 * 14 13 12 30 30 H 1.09001 * 109.45624 * 179.19392 * 14 13 12 31 31 H 1.09004 * 109.22079 * 179.21048 * 16 15 14 32 32 H 1.09000 * 109.39027 * 289.15208 * 17 16 15 33 33 H 1.09004 * 109.39062 * 48.85628 * 17 16 15 34 34 H 1.08993 * 109.61131 * 303.28368 * 18 17 16 35 35 H 1.08995 * 109.68231 * 182.93408 * 18 17 16 36 36 H 1.09000 * 109.57952 * 293.45629 * 20 19 18 37 37 H 1.09010 * 109.68207 * 173.13387 * 20 19 18 38 38 H 1.09004 * 109.38775 * 311.13962 * 21 16 15 39 39 H 1.08995 * 109.39107 * 70.84424 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7090 1.3467 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0819 -1.1954 -0.0774 9 6 1.2550 -2.4970 0.1059 10 1 0.3064 -2.4145 -0.4244 11 6 0.9895 -2.8134 1.5795 12 6 0.2456 -4.1477 1.6838 13 6 1.0801 -5.2422 1.0129 14 6 1.3431 -4.8553 -0.4442 15 7 2.0571 -3.5729 -0.4903 16 6 2.4485 -3.2375 -1.8659 17 6 1.1979 -3.1408 -2.7347 18 6 1.5516 -2.5289 -4.0930 19 16 2.7108 -3.6355 -4.9501 20 6 4.0238 -3.8510 -3.7120 21 6 3.3917 -4.3131 -2.3964 22 1 -0.4849 -0.8366 0.0781 23 1 1.9373 -2.8824 2.1134 24 1 0.3811 -2.0223 2.0177 25 1 -0.7193 -4.0670 1.1833 26 1 0.0926 -4.3982 2.7336 27 1 0.5364 -6.1864 1.0463 28 1 2.0293 -5.3494 1.5379 29 1 0.3941 -4.7617 -0.9721 30 1 1.9493 -5.6258 -0.9207 31 1 2.9625 -2.2762 -1.8684 32 1 0.7824 -4.1375 -2.8831 33 1 0.4590 -2.5128 -2.2368 34 1 2.0181 -1.5550 -3.9451 35 1 0.6472 -2.4138 -4.6904 36 1 4.5386 -2.9029 -3.5568 37 1 4.7355 -4.6006 -4.0583 38 1 4.1768 -4.4993 -1.6635 39 1 2.8323 -5.2328 -2.5670 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259753780.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:41 Heat of formation + Delta-G solvation = -33.450099 kcal Electronic energy + Delta-G solvation = -18454.828647 eV Core-core repulsion = 15907.653473 eV Total energy + Delta-G solvation = -2547.175173 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.68216 -37.14252 -35.14435 -32.85475 -32.48823 -31.25249 -27.39911 -26.50383 -24.47433 -24.23251 -23.08119 -21.32954 -20.17141 -18.70404 -17.78436 -16.98635 -16.24880 -15.69453 -15.67068 -15.22710 -14.99790 -14.95955 -14.66895 -14.41824 -13.89038 -13.71561 -13.55009 -13.27938 -13.03267 -12.81384 -12.69649 -12.54017 -12.00185 -11.96324 -11.91786 -11.71640 -11.58823 -11.34725 -11.05824 -10.65060 -10.49973 -10.34863 -8.94971 -8.70301 -8.53547 -6.26336 0.81306 1.50599 1.53036 1.57549 1.73771 2.54053 3.12894 3.25579 3.69233 3.88255 3.98019 4.02676 4.08757 4.12893 4.23092 4.23464 4.45658 4.48744 4.54163 4.64961 4.72083 4.74717 4.78660 4.84947 4.94270 4.96335 4.98577 5.11531 5.16458 5.21342 5.30817 5.34766 5.48323 5.59351 6.02190 6.08893 6.52698 6.57299 6.82209 7.52053 8.80958 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.015889 B = 0.010131 C = 0.007042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.799982 B = 2763.239328 C = 3975.349847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.025 4.025 3 Si 1.107 2.893 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.579 4.579 8 H 0.043 0.957 9 C 0.206 3.794 10 H -0.023 1.023 11 C -0.099 4.099 12 C -0.119 4.119 13 C -0.105 4.105 14 C 0.048 3.952 15 N -0.527 5.527 16 C 0.093 3.907 17 C -0.134 4.134 18 C -0.066 4.066 19 S -0.283 6.283 20 C -0.068 4.068 21 C -0.103 4.103 22 H 0.256 0.744 23 H 0.048 0.952 24 H 0.024 0.976 25 H 0.041 0.959 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.012 0.988 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.104 0.896 36 H 0.081 0.919 37 H 0.130 0.870 38 H 0.086 0.914 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.243 -10.045 -4.298 12.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.224 4.224 3 Si 0.931 3.069 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.618 4.618 8 H 0.061 0.939 9 C 0.099 3.901 10 H -0.006 1.006 11 C -0.138 4.138 12 C -0.157 4.157 13 C -0.143 4.143 14 C -0.080 4.080 15 N -0.250 5.250 16 C -0.016 4.016 17 C -0.174 4.174 18 C -0.215 4.215 19 S -0.057 6.057 20 C -0.216 4.216 21 C -0.142 4.142 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.043 0.957 25 H 0.059 0.941 26 H 0.088 0.912 27 H 0.103 0.897 28 H 0.087 0.913 29 H 0.030 0.970 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.122 0.878 36 H 0.100 0.900 37 H 0.148 0.852 38 H 0.104 0.896 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.418 -8.898 -5.105 11.601 hybrid contribution -0.996 -0.469 0.964 1.464 sum 4.421 -9.367 -4.141 11.155 Atomic orbital electron populations 1.70865 1.07709 1.30144 1.49032 1.26907 0.96491 1.05630 0.93342 0.83038 0.74480 0.72169 0.77185 1.19816 1.20980 1.20920 1.22098 0.94274 0.92198 1.53210 0.93865 1.19206 0.90714 0.89317 0.90895 1.00571 1.21570 0.98404 0.95415 0.98389 1.21628 0.97943 0.95460 1.00621 1.21524 1.00181 0.97721 0.94831 1.22203 0.96033 0.92476 0.97268 1.62191 1.43035 1.02617 1.17161 1.21444 0.94234 0.98936 0.86959 1.22156 0.99975 1.00357 0.94928 1.23256 1.00647 0.99343 0.98221 1.86486 1.25647 1.65035 1.28566 1.23467 0.97292 1.05733 0.95150 1.21710 0.98997 0.97953 0.95575 0.93337 0.93346 0.95738 0.94053 0.91183 0.89651 0.91344 0.96986 0.89455 0.91873 0.91145 0.94018 0.90993 0.87801 0.89992 0.85234 0.89588 0.90469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.92 13.62 21.44 0.29 -55.63 16 2 C -0.03 -1.40 5.45 84.65 0.46 -0.93 16 3 Si 1.11 50.11 29.91 68.60 2.05 52.16 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 7 C -0.58 -31.11 6.97 25.60 0.18 -30.93 16 8 H 0.04 2.38 7.40 -2.91 -0.02 2.36 16 9 C 0.21 9.91 1.11 44.19 0.05 9.95 16 10 H -0.02 -1.25 5.00 -2.39 -0.01 -1.27 16 11 C -0.10 -4.45 5.36 30.65 0.16 -4.29 16 12 C -0.12 -4.21 6.00 30.68 0.18 -4.03 16 13 C -0.10 -3.17 6.09 30.65 0.19 -2.99 16 14 C 0.05 1.60 4.67 86.33 0.40 2.00 16 15 N -0.53 -21.11 4.46 -852.01 -3.80 -24.90 16 16 C 0.09 3.46 1.70 44.64 0.08 3.53 16 17 C -0.13 -4.94 4.23 30.50 0.13 -4.81 16 18 C -0.07 -2.17 6.46 72.02 0.47 -1.71 16 19 S -0.28 -8.07 22.33 -56.49 -1.26 -9.34 16 20 C -0.07 -1.70 6.45 72.02 0.46 -1.24 16 21 C -0.10 -2.90 4.50 30.49 0.14 -2.77 16 22 H 0.26 15.52 6.66 -92.70 -0.62 14.90 16 23 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 24 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 27 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.01 0.43 6.86 -2.38 -0.02 0.41 16 30 H 0.09 2.47 6.27 -2.39 -0.01 2.46 16 31 H 0.06 2.77 6.39 -2.38 -0.02 2.75 16 32 H 0.07 2.43 7.04 -2.39 -0.02 2.41 16 33 H 0.04 1.90 6.12 -2.38 -0.01 1.88 16 34 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 36 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.13 2.51 8.14 -2.38 -0.02 2.49 16 38 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.08 2.03 6.78 -2.39 -0.02 2.02 16 Total: -1.00 -60.20 298.72 1.34 -58.86 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 1.16 Total: 17.05 kcal Atomic # 6 Polarization: -41.09 SS G_CDS: 2.90 Total: -38.19 kcal Atomic # 7 Polarization: -77.03 SS G_CDS: -3.51 Total: -80.54 kcal Atomic # 14 Polarization: 50.11 SS G_CDS: 2.05 Total: 52.16 kcal Atomic # 16 Polarization: -8.07 SS G_CDS: -1.26 Total: -9.34 kcal Total: -60.20 1.34 -58.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259753780.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.405 kcal (2) G-P(sol) polarization free energy of solvation -60.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds