Wall clock time and date at job start Mon Mar 30 2020 06:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99820 * 2 1 4 4 H 1.48502 * 109.47013 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47341 * 299.99611 * 3 2 1 6 6 H 1.48496 * 109.47293 * 59.99833 * 3 2 1 7 7 C 1.37877 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99731 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00029 * 0.02562 * 7 2 1 10 10 H 1.09005 * 108.74101 * 61.54603 * 9 7 2 11 11 C 1.54267 * 108.99378 * 303.11545 * 9 7 2 12 12 C 1.53819 * 112.02865 * 197.74468 * 11 9 7 13 13 C 1.50816 * 111.61586 * 318.99240 * 12 11 9 14 14 N 1.47629 * 108.03649 * 95.07156 * 13 12 11 15 15 C 1.46898 * 111.00228 * 150.30405 * 14 13 12 16 16 H 1.08997 * 109.59777 * 69.61279 * 15 14 13 17 17 C 1.52936 * 109.60210 * 309.28618 * 15 14 13 18 18 C 1.53708 * 112.48969 * 209.96352 * 17 15 14 19 19 S 1.83400 * 104.96894 * 2.83086 * 18 17 15 20 20 C 1.55157 * 109.60432 * 189.93187 * 15 14 13 21 21 C 1.39781 * 114.76841 * 277.17080 * 14 13 12 22 22 C 1.50757 * 108.85574 * 179.97438 * 9 7 2 23 23 H 0.97000 * 120.00031 * 0.02562 * 1 2 3 24 24 H 1.08994 * 108.99037 * 77.05558 * 11 9 7 25 25 H 1.08997 * 108.90964 * 318.37504 * 11 9 7 26 26 H 1.08995 * 109.04900 * 198.44525 * 12 11 9 27 27 H 1.09004 * 108.99244 * 79.50503 * 12 11 9 28 28 H 1.09001 * 109.75113 * 335.43965 * 13 12 11 29 29 H 1.09000 * 109.78951 * 214.72748 * 13 12 11 30 30 H 1.08995 * 108.89494 * 330.76008 * 17 15 14 31 31 H 1.08997 * 108.88865 * 89.32052 * 17 15 14 32 32 H 1.09000 * 110.34310 * 121.69718 * 18 17 15 33 33 H 1.08999 * 110.34862 * 243.95295 * 18 17 15 34 34 H 1.08998 * 111.12818 * 279.28447 * 20 15 14 35 35 H 1.09002 * 111.12690 * 43.45802 * 20 15 14 36 36 H 1.08995 * 109.02346 * 301.68179 * 21 14 13 37 37 H 1.09005 * 109.02059 * 182.85641 * 21 14 13 38 38 H 1.09002 * 109.54238 * 93.94635 * 22 9 7 39 39 H 1.08999 * 109.53910 * 333.77146 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6504 -2.5567 -0.9072 11 6 0.3094 -2.5352 1.2219 12 6 -0.1604 -3.9636 1.5462 13 6 -0.4889 -4.7380 0.2944 14 7 0.7035 -5.5217 -0.0843 15 6 0.3218 -6.7575 -0.7808 16 1 -0.0813 -6.5137 -1.7636 17 6 -0.7346 -7.5020 0.0370 18 6 -0.6649 -9.0249 -0.1598 19 16 0.7688 -9.2937 -1.2715 20 6 1.5660 -7.6706 -0.9404 21 6 1.6635 -4.8126 -0.8119 22 6 2.2430 -3.6344 0.0005 23 1 -0.4850 0.8400 -0.0004 24 1 -0.5619 -1.9134 1.0165 25 1 0.8361 -2.1305 2.0861 26 1 -1.0486 -3.9116 2.1757 27 1 0.6300 -4.4825 2.0885 28 1 -0.7463 -4.0477 -0.5089 29 1 -1.3259 -5.4097 0.4850 30 1 -0.5877 -7.2757 1.0930 31 1 -1.7230 -7.1544 -0.2635 32 1 -0.5021 -9.5234 0.7957 33 1 -1.5800 -9.3889 -0.6269 34 1 2.1782 -7.3563 -1.7858 35 1 2.1526 -7.6995 -0.0221 36 1 1.2051 -4.4252 -1.7217 37 1 2.4739 -5.4889 -1.0842 38 1 2.4296 -3.9555 1.0253 39 1 3.1768 -3.3026 -0.4535 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259761828.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:51 Heat of formation + Delta-G solvation = -2.609096 kcal Electronic energy + Delta-G solvation = -17821.692769 eV Core-core repulsion = 15275.854962 eV Total energy + Delta-G solvation = -2545.837807 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.39112 -35.90904 -33.30600 -31.96550 -30.95647 -29.08193 -26.48626 -24.62083 -24.37806 -22.49576 -20.65019 -19.74353 -18.24136 -17.06436 -16.24228 -16.06871 -15.09641 -14.70992 -14.44820 -14.11759 -13.78224 -13.31005 -13.04785 -12.81189 -12.42620 -12.04214 -11.95842 -11.57576 -11.48373 -11.35031 -10.93789 -10.93208 -10.72102 -10.44213 -10.34787 -10.18166 -9.92672 -9.63757 -9.31390 -9.02900 -8.60826 -8.28122 -7.84640 -7.78745 -5.96923 -4.01607 1.78150 2.22776 3.29457 3.37846 3.41660 4.16999 4.44958 4.47416 4.74488 4.85547 5.08545 5.14992 5.32172 5.43863 5.48604 5.60585 5.64931 5.71543 5.86237 5.93047 5.96173 6.08467 6.19956 6.25550 6.40253 6.62870 6.71203 6.82799 6.93986 7.21296 7.27419 7.44623 7.58061 7.80383 7.85378 8.06550 8.18320 8.49055 9.02920 9.62624 11.09119 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.049463 B = 0.004793 C = 0.004528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.942068 B = 5840.962840 C = 6182.453317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.887 3.113 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.045 3.955 10 H 0.017 0.983 11 C -0.100 4.100 12 C -0.119 4.119 13 C 0.066 3.934 14 N -0.540 5.540 15 C 0.086 3.914 16 H 0.052 0.948 17 C -0.126 4.126 18 C -0.063 4.063 19 S -0.309 6.309 20 C -0.054 4.054 21 C 0.070 3.930 22 C -0.100 4.100 23 H 0.257 0.743 24 H 0.077 0.923 25 H 0.037 0.963 26 H 0.043 0.957 27 H 0.059 0.941 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.018 0.982 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.832 -14.583 0.270 14.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.715 3.285 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.552 4.552 8 H 0.072 0.928 9 C 0.027 3.973 10 H 0.035 0.965 11 C -0.138 4.138 12 C -0.157 4.157 13 C -0.061 4.061 14 N -0.266 5.266 15 C -0.024 4.024 16 H 0.070 0.930 17 C -0.165 4.165 18 C -0.211 4.211 19 S -0.084 6.084 20 C -0.203 4.203 21 C -0.059 4.059 22 C -0.138 4.138 23 H 0.067 0.933 24 H 0.095 0.905 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.114 0.886 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.036 0.964 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.455 -15.492 -0.042 15.560 hybrid contribution -0.258 2.190 -0.030 2.206 sum -1.714 -13.301 -0.072 13.411 Atomic orbital electron populations 1.69934 1.05845 1.26056 1.51125 1.24982 0.94828 0.98986 0.95233 0.86615 0.80221 0.84144 0.77493 1.19847 1.21167 1.21112 1.21426 0.92770 0.90861 1.50121 0.92752 1.18533 0.92455 0.92066 0.94276 0.96482 1.21955 1.01240 0.91934 0.98685 1.21526 0.99800 0.98450 0.95895 1.21914 0.90078 0.95177 0.98888 1.59116 1.14107 1.06572 1.46780 1.22442 0.92520 0.91178 0.96235 0.92969 1.22052 0.99659 0.91984 1.02824 1.23861 0.97876 0.98634 1.00743 1.87757 1.30035 1.28486 1.62120 1.24450 0.99428 0.90797 1.05595 1.21113 0.93736 0.95970 0.95092 1.21577 0.99230 0.94243 0.98784 0.93274 0.90458 0.94375 0.93876 0.92228 0.93287 0.91948 0.89402 0.90485 0.89196 0.88612 0.87881 0.88082 0.96419 0.92514 0.92612 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.26 11.32 55.43 0.63 -24.63 16 2 C 0.06 1.67 5.28 -17.82 -0.09 1.58 16 3 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.51 -13.95 8.34 -34.44 -0.29 -14.24 16 8 H 0.05 1.47 7.44 -52.49 -0.39 1.08 16 9 C 0.05 1.09 1.65 -92.23 -0.15 0.94 16 10 H 0.02 0.46 6.59 -51.93 -0.34 0.11 16 11 C -0.10 -2.30 4.65 -25.64 -0.12 -2.42 16 12 C -0.12 -2.17 5.41 -27.40 -0.15 -2.32 16 13 C 0.07 1.09 5.03 -4.52 -0.02 1.07 16 14 N -0.54 -8.39 3.79 -230.68 -0.87 -9.27 16 15 C 0.09 1.12 2.36 -66.61 -0.16 0.97 16 16 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 17 C -0.13 -1.39 4.47 -26.40 -0.12 -1.50 16 18 C -0.06 -0.62 7.38 37.53 0.28 -0.34 16 19 S -0.31 -3.77 23.22 -107.50 -2.50 -6.26 16 20 C -0.05 -0.66 5.85 38.30 0.22 -0.44 16 21 C 0.07 1.21 4.82 -6.76 -0.03 1.17 16 22 C -0.10 -2.04 5.14 -27.12 -0.14 -2.18 16 23 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 24 H 0.08 1.99 6.52 -51.93 -0.34 1.65 16 25 H 0.04 0.92 7.98 -51.93 -0.41 0.51 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 1.08 7.26 -51.93 -0.38 0.71 16 28 H 0.05 0.94 6.67 -51.93 -0.35 0.60 16 29 H 0.06 0.88 5.57 -51.93 -0.29 0.59 16 30 H 0.09 1.00 7.63 -51.93 -0.40 0.61 16 31 H 0.08 0.79 7.46 -51.93 -0.39 0.40 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.10 1.22 7.46 -51.93 -0.39 0.83 16 35 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.02 0.33 7.55 -51.93 -0.39 -0.06 16 37 H 0.06 0.86 6.21 -51.93 -0.32 0.54 16 38 H 0.06 1.12 7.11 -51.93 -0.37 0.76 16 39 H 0.06 1.17 7.49 -51.93 -0.39 0.78 16 LS Contribution 297.53 15.07 4.48 4.48 Total: -1.00 -27.68 297.53 -10.44 -38.12 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -6.39 Total: -0.94 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: -0.77 Total: -17.73 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: -0.25 Total: -33.90 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -3.77 SS G_CDS: -2.50 Total: -6.26 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.68 -10.44 -38.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259761828.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.513 kcal (2) G-P(sol) polarization free energy of solvation -27.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds