Wall clock time and date at job start Mon Mar 30 2020 06:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99820 * 2 1 4 4 H 1.48502 * 109.47013 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47341 * 299.99611 * 3 2 1 6 6 H 1.48496 * 109.47293 * 59.99833 * 3 2 1 7 7 C 1.37877 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99731 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00029 * 0.02562 * 7 2 1 10 10 H 1.09005 * 108.74101 * 61.54603 * 9 7 2 11 11 C 1.54267 * 108.99378 * 303.11545 * 9 7 2 12 12 C 1.53819 * 112.02865 * 197.74468 * 11 9 7 13 13 C 1.50816 * 111.61586 * 318.99240 * 12 11 9 14 14 N 1.47629 * 108.03649 * 95.07156 * 13 12 11 15 15 C 1.46898 * 111.00228 * 150.30405 * 14 13 12 16 16 H 1.08997 * 109.59777 * 69.61279 * 15 14 13 17 17 C 1.52936 * 109.60210 * 309.28618 * 15 14 13 18 18 C 1.53708 * 112.48969 * 209.96352 * 17 15 14 19 19 S 1.83400 * 104.96894 * 2.83086 * 18 17 15 20 20 C 1.55157 * 109.60432 * 189.93187 * 15 14 13 21 21 C 1.39781 * 114.76841 * 277.17080 * 14 13 12 22 22 C 1.50757 * 108.85574 * 179.97438 * 9 7 2 23 23 H 0.97000 * 120.00031 * 0.02562 * 1 2 3 24 24 H 1.08994 * 108.99037 * 77.05558 * 11 9 7 25 25 H 1.08997 * 108.90964 * 318.37504 * 11 9 7 26 26 H 1.08995 * 109.04900 * 198.44525 * 12 11 9 27 27 H 1.09004 * 108.99244 * 79.50503 * 12 11 9 28 28 H 1.09001 * 109.75113 * 335.43965 * 13 12 11 29 29 H 1.09000 * 109.78951 * 214.72748 * 13 12 11 30 30 H 1.08995 * 108.89494 * 330.76008 * 17 15 14 31 31 H 1.08997 * 108.88865 * 89.32052 * 17 15 14 32 32 H 1.09000 * 110.34310 * 121.69718 * 18 17 15 33 33 H 1.08999 * 110.34862 * 243.95295 * 18 17 15 34 34 H 1.08998 * 111.12818 * 279.28447 * 20 15 14 35 35 H 1.09002 * 111.12690 * 43.45802 * 20 15 14 36 36 H 1.08995 * 109.02346 * 301.68179 * 21 14 13 37 37 H 1.09005 * 109.02059 * 182.85641 * 21 14 13 38 38 H 1.09002 * 109.54238 * 93.94635 * 22 9 7 39 39 H 1.08999 * 109.53910 * 333.77146 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6504 -2.5567 -0.9072 11 6 0.3094 -2.5352 1.2219 12 6 -0.1604 -3.9636 1.5462 13 6 -0.4889 -4.7380 0.2944 14 7 0.7035 -5.5217 -0.0843 15 6 0.3218 -6.7575 -0.7808 16 1 -0.0813 -6.5137 -1.7636 17 6 -0.7346 -7.5020 0.0370 18 6 -0.6649 -9.0249 -0.1598 19 16 0.7688 -9.2937 -1.2715 20 6 1.5660 -7.6706 -0.9404 21 6 1.6635 -4.8126 -0.8119 22 6 2.2430 -3.6344 0.0005 23 1 -0.4850 0.8400 -0.0004 24 1 -0.5619 -1.9134 1.0165 25 1 0.8361 -2.1305 2.0861 26 1 -1.0486 -3.9116 2.1757 27 1 0.6300 -4.4825 2.0885 28 1 -0.7463 -4.0477 -0.5089 29 1 -1.3259 -5.4097 0.4850 30 1 -0.5877 -7.2757 1.0930 31 1 -1.7230 -7.1544 -0.2635 32 1 -0.5021 -9.5234 0.7957 33 1 -1.5800 -9.3889 -0.6269 34 1 2.1782 -7.3563 -1.7858 35 1 2.1526 -7.6995 -0.0221 36 1 1.2051 -4.4252 -1.7217 37 1 2.4739 -5.4889 -1.0842 38 1 2.4296 -3.9555 1.0253 39 1 3.1768 -3.3026 -0.4535 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259761828.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:51 Heat of formation + Delta-G solvation = -17.474537 kcal Electronic energy + Delta-G solvation = -17822.337383 eV Core-core repulsion = 15275.854962 eV Total energy + Delta-G solvation = -2546.482421 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.72906 -37.36835 -34.88843 -33.48912 -32.66477 -30.14835 -28.16740 -26.15455 -25.75235 -24.06183 -21.99898 -20.91621 -20.01839 -18.50971 -17.83184 -17.16994 -16.58345 -16.30752 -15.75049 -15.46156 -15.12031 -14.77221 -14.55345 -14.04239 -13.89416 -13.30449 -13.22941 -13.08152 -12.90108 -12.74714 -12.66291 -12.48859 -12.15385 -11.96815 -11.83559 -11.59356 -11.48595 -11.20490 -10.89580 -10.78977 -10.56190 -10.34020 -9.16447 -8.72795 -8.07979 -6.20350 0.88696 1.35146 1.37710 1.40099 1.50922 2.42805 2.96250 3.18596 3.51905 3.81801 3.98820 4.06548 4.20580 4.22878 4.29938 4.39672 4.46816 4.57180 4.62478 4.72447 4.76066 4.82818 4.89736 4.96609 5.00611 5.07211 5.16814 5.24419 5.30976 5.40653 5.49263 5.64030 5.71716 6.05652 6.23976 6.25057 6.41601 6.48432 6.93892 7.47265 8.96359 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.049463 B = 0.004793 C = 0.004528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.942068 B = 5840.962840 C = 6182.453317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.012 3.988 3 Si 0.949 3.051 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.536 4.536 8 H 0.050 0.950 9 C 0.047 3.953 10 H -0.016 1.016 11 C -0.091 4.091 12 C -0.108 4.108 13 C 0.071 3.929 14 N -0.537 5.537 15 C 0.086 3.914 16 H 0.044 0.956 17 C -0.124 4.124 18 C -0.050 4.050 19 S -0.338 6.338 20 C -0.048 4.048 21 C 0.082 3.918 22 C -0.094 4.094 23 H 0.258 0.742 24 H 0.044 0.956 25 H 0.016 0.984 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.017 0.983 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.103 0.897 36 H -0.003 1.003 37 H 0.083 0.917 38 H 0.059 0.941 39 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.864 -16.159 0.856 16.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.186 4.186 3 Si 0.775 3.225 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.575 4.575 8 H 0.068 0.932 9 C 0.029 3.971 10 H 0.002 0.998 11 C -0.129 4.129 12 C -0.146 4.146 13 C -0.056 4.056 14 N -0.262 5.262 15 C -0.023 4.023 16 H 0.062 0.938 17 C -0.162 4.162 18 C -0.198 4.198 19 S -0.113 6.113 20 C -0.196 4.196 21 C -0.048 4.048 22 C -0.132 4.132 23 H 0.067 0.933 24 H 0.063 0.937 25 H 0.035 0.965 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.035 0.965 29 H 0.115 0.885 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.123 0.877 33 H 0.130 0.870 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.015 0.985 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.481 -17.086 0.543 17.158 hybrid contribution -0.266 2.677 -0.227 2.700 sum -1.747 -14.408 0.316 14.517 Atomic orbital electron populations 1.70075 1.07085 1.26748 1.51716 1.25733 0.95656 1.02261 0.94997 0.85643 0.79202 0.80136 0.77518 1.19200 1.20814 1.20655 1.21849 0.92902 0.92611 1.50103 0.93171 1.18494 0.92790 0.92596 0.93212 0.99811 1.21750 0.99336 0.94708 0.97107 1.21398 1.00695 0.95341 0.97125 1.21841 0.91587 0.95267 0.96856 1.59092 1.13413 1.06892 1.46822 1.22532 0.93731 0.90102 0.95968 0.93840 1.22015 0.99260 0.92562 1.02412 1.23935 0.97171 0.97796 1.00907 1.87914 1.31680 1.28452 1.63250 1.24371 0.99011 0.90516 1.05745 1.20925 0.94816 0.95391 0.93650 1.21432 0.98021 0.94215 0.99562 0.93296 0.93695 0.96523 0.92028 0.91414 0.96496 0.88550 0.89163 0.89422 0.87690 0.86960 0.87777 0.87887 0.98468 0.89908 0.92193 0.93144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.51 11.32 21.45 0.24 -53.27 16 2 C 0.01 0.67 5.28 84.65 0.45 1.12 16 3 Si 0.95 44.17 29.54 68.60 2.03 46.20 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 7 C -0.54 -29.93 8.34 25.60 0.21 -29.72 16 8 H 0.05 2.76 7.44 -2.91 -0.02 2.74 16 9 C 0.05 2.36 1.65 -11.84 -0.02 2.34 16 10 H -0.02 -0.91 6.59 -2.38 -0.02 -0.92 16 11 C -0.09 -4.29 4.65 31.30 0.15 -4.14 16 12 C -0.11 -3.83 5.41 30.16 0.16 -3.67 16 13 C 0.07 2.27 5.03 85.45 0.43 2.70 16 14 N -0.54 -15.80 3.79 -883.73 -3.35 -19.15 16 15 C 0.09 2.06 2.36 45.63 0.11 2.17 16 16 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 17 C -0.12 -2.30 4.47 30.81 0.14 -2.16 16 18 C -0.05 -0.81 7.38 72.22 0.53 -0.28 16 19 S -0.34 -7.46 23.22 -56.49 -1.31 -8.77 16 20 C -0.05 -1.06 5.85 72.72 0.43 -0.64 16 21 C 0.08 2.76 4.82 88.06 0.42 3.18 16 22 C -0.09 -3.85 5.14 30.34 0.16 -3.70 16 23 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 24 H 0.04 2.39 6.52 -2.39 -0.02 2.38 16 25 H 0.02 0.81 7.98 -2.39 -0.02 0.79 16 26 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.07 2.33 7.26 -2.39 -0.02 2.31 16 28 H 0.02 0.65 6.67 -2.39 -0.02 0.64 16 29 H 0.10 2.44 5.57 -2.39 -0.01 2.43 16 30 H 0.09 1.70 7.63 -2.39 -0.02 1.68 16 31 H 0.09 1.47 7.46 -2.39 -0.02 1.45 16 32 H 0.10 1.44 8.14 -2.39 -0.02 1.43 16 33 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.10 2.26 7.46 -2.39 -0.02 2.24 16 35 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.00 -0.10 7.55 -2.39 -0.02 -0.12 16 37 H 0.08 2.37 6.21 -2.38 -0.01 2.36 16 38 H 0.06 2.38 7.11 -2.39 -0.02 2.36 16 39 H 0.05 2.09 7.49 -2.39 -0.02 2.07 16 Total: -1.00 -61.06 297.53 1.78 -59.28 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 1.01 Total: 8.50 kcal Atomic # 6 Polarization: -35.95 SS G_CDS: 3.16 Total: -32.79 kcal Atomic # 7 Polarization: -69.31 SS G_CDS: -3.11 Total: -72.42 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 16 Polarization: -7.46 SS G_CDS: -1.31 Total: -8.77 kcal Total: -61.06 1.78 -59.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259761828.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.804 kcal (2) G-P(sol) polarization free energy of solvation -61.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds