Wall clock time and date at job start Mon Mar 30 2020 06:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99639 * 2 1 4 4 H 1.48503 * 109.46890 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46998 * 299.99850 * 3 2 1 6 6 H 1.48501 * 109.47007 * 60.00118 * 3 2 1 7 7 C 1.37878 * 120.00509 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00161 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99588 * 0.02562 * 7 2 1 10 10 H 1.08998 * 108.83116 * 61.49844 * 9 7 2 11 11 C 1.54164 * 108.77136 * 303.03289 * 9 7 2 12 12 C 1.53832 * 111.96801 * 197.74143 * 11 9 7 13 13 C 1.50814 * 111.61903 * 319.04252 * 12 11 9 14 14 N 1.47631 * 108.05461 * 95.06103 * 13 12 11 15 15 C 1.46891 * 111.00417 * 150.34242 * 14 13 12 16 16 H 1.09002 * 109.99558 * 63.27055 * 15 14 13 17 17 C 1.53857 * 109.97686 * 184.53586 * 15 14 13 18 18 C 1.54277 * 108.78235 * 166.52698 * 17 15 14 19 19 S 1.83093 * 104.65129 * 332.14022 * 18 17 15 20 20 C 1.54730 * 109.77150 * 302.13094 * 15 14 13 21 21 C 1.39781 * 114.75386 * 277.19839 * 14 13 12 22 22 C 1.50761 * 108.84961 * 180.02562 * 9 7 2 23 23 H 0.96995 * 120.00339 * 0.02562 * 1 2 3 24 24 H 1.09005 * 108.98465 * 318.38039 * 11 9 7 25 25 H 1.08998 * 108.98254 * 77.18747 * 11 9 7 26 26 H 1.08996 * 109.04894 * 79.59431 * 12 11 9 27 27 H 1.09005 * 109.04499 * 198.49375 * 12 11 9 28 28 H 1.08996 * 109.74765 * 335.41688 * 13 12 11 29 29 H 1.09004 * 109.74522 * 214.69677 * 13 12 11 30 30 H 1.09006 * 109.60796 * 46.70411 * 17 15 14 31 31 H 1.08994 * 109.61345 * 286.36267 * 17 15 14 32 32 H 1.09002 * 110.39661 * 90.93294 * 18 17 15 33 33 H 1.09003 * 110.40242 * 213.34362 * 18 17 15 34 34 H 1.08999 * 110.88085 * 80.29335 * 20 15 14 35 35 H 1.08999 * 110.89220 * 316.60484 * 20 15 14 36 36 H 1.09005 * 109.01860 * 182.86260 * 21 14 13 37 37 H 1.08999 * 109.02273 * 301.67906 * 21 14 13 38 38 H 1.08995 * 109.54248 * 93.86216 * 22 9 7 39 39 H 1.08990 * 109.61996 * 333.62343 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 1 0.6492 -2.5571 -0.9086 11 6 0.3135 -2.5317 1.2216 12 6 -0.1576 -3.9594 1.5477 13 6 -0.4896 -4.7342 0.2971 14 7 0.7009 -5.5197 -0.0840 15 6 0.3161 -6.7549 -0.7797 16 1 -0.1916 -6.5139 -1.7137 17 6 1.5642 -7.6082 -1.0650 18 6 1.1136 -9.0248 -1.4776 19 16 -0.4998 -9.2588 -0.6443 20 6 -0.6141 -7.5974 0.1254 21 6 1.6603 -4.8119 -0.8136 22 6 2.2432 -3.6343 -0.0014 23 1 -0.4850 0.8400 -0.0004 24 1 0.8424 -2.1272 2.0846 25 1 -0.5582 -1.9102 1.0169 26 1 0.6322 -4.4796 2.0894 27 1 -1.0446 -3.9058 2.1790 28 1 -0.7480 -4.0441 -0.5060 29 1 -1.3268 -5.4048 0.4907 30 1 2.1799 -7.6672 -0.1674 31 1 2.1388 -7.1570 -1.8738 32 1 0.9950 -9.0857 -2.5594 33 1 1.8317 -9.7680 -1.1308 34 1 -1.6367 -7.2219 0.0881 35 1 -0.2442 -7.6183 1.1505 36 1 2.4692 -5.4892 -1.0877 37 1 1.2004 -4.4239 -1.7225 38 1 2.4302 -3.9548 1.0234 39 1 3.1769 -3.3044 -0.4567 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259761833.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:53 Heat of formation + Delta-G solvation = -4.349406 kcal Electronic energy + Delta-G solvation = -17813.858571 eV Core-core repulsion = 15267.945298 eV Total energy + Delta-G solvation = -2545.913273 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.38283 -35.94916 -33.33078 -31.66923 -31.27318 -29.12979 -25.95483 -25.52218 -23.41871 -22.80636 -20.78710 -19.81642 -18.25717 -17.08357 -16.25990 -16.03612 -14.96666 -14.68952 -14.54897 -14.12134 -13.76012 -13.40152 -13.13285 -12.70532 -12.27326 -12.20695 -11.88454 -11.67347 -11.46984 -11.34000 -11.03994 -10.93642 -10.77229 -10.49226 -10.30777 -10.05016 -10.00278 -9.67205 -9.32907 -9.02171 -8.60376 -8.28540 -7.85606 -7.76872 -5.97077 -4.01945 1.74156 2.27486 3.29145 3.37555 3.41197 4.13132 4.44704 4.55020 4.71539 4.84923 5.05323 5.11341 5.31470 5.41262 5.44819 5.62739 5.63038 5.72167 5.81867 5.90117 5.95811 6.08622 6.20015 6.24541 6.40526 6.62101 6.71166 6.83423 6.93014 7.20735 7.27450 7.44127 7.57225 7.79788 7.84734 8.06202 8.18376 8.48647 9.02512 9.62304 11.08879 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.050247 B = 0.004772 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.117651 B = 5866.276853 C = 6193.180574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.887 3.113 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.045 3.955 10 H 0.017 0.983 11 C -0.100 4.100 12 C -0.119 4.119 13 C 0.068 3.932 14 N -0.539 5.539 15 C 0.082 3.918 16 H 0.053 0.947 17 C -0.126 4.126 18 C -0.068 4.068 19 S -0.307 6.307 20 C -0.056 4.056 21 C 0.069 3.931 22 C -0.100 4.100 23 H 0.257 0.743 24 H 0.038 0.962 25 H 0.077 0.923 26 H 0.059 0.941 27 H 0.043 0.957 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.058 0.942 37 H 0.017 0.983 38 H 0.055 0.945 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.226 -14.557 -1.177 14.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.715 3.285 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.552 4.552 8 H 0.072 0.928 9 C 0.026 3.974 10 H 0.035 0.965 11 C -0.138 4.138 12 C -0.157 4.157 13 C -0.058 4.058 14 N -0.264 5.264 15 C -0.028 4.028 16 H 0.071 0.929 17 C -0.164 4.164 18 C -0.216 4.216 19 S -0.082 6.082 20 C -0.205 4.205 21 C -0.060 4.060 22 C -0.138 4.138 23 H 0.067 0.933 24 H 0.057 0.943 25 H 0.096 0.904 26 H 0.078 0.922 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.077 0.923 37 H 0.035 0.965 38 H 0.074 0.926 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.439 -15.466 -0.750 15.490 hybrid contribution 0.795 2.219 -0.778 2.482 sum 0.356 -13.247 -1.528 13.339 Atomic orbital electron populations 1.69928 1.05843 1.26072 1.51090 1.24981 0.94824 0.98980 0.95231 0.86620 0.80209 0.84161 0.77504 1.19857 1.21159 1.21108 1.21427 0.92758 0.90867 1.50173 0.92769 1.18525 0.92484 0.92075 0.94287 0.96458 1.21948 1.01248 0.91946 0.98645 1.21529 0.99871 0.98432 0.95863 1.21878 0.89926 0.95114 0.98921 1.59058 1.14180 1.06510 1.46633 1.22556 0.93860 0.91350 0.95008 0.92923 1.22381 0.98484 0.92256 1.03289 1.23919 0.95257 0.99937 1.02514 1.87508 1.29995 1.24314 1.66353 1.24303 1.03005 0.91011 1.02149 1.21165 0.93790 0.96023 0.95053 1.21588 0.99177 0.94260 0.98792 0.93257 0.94340 0.90422 0.92208 0.93808 0.93205 0.92188 0.89507 0.89792 0.89138 0.88678 0.88138 0.88022 0.92333 0.96513 0.92592 0.92543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.25 11.32 55.43 0.63 -24.63 16 2 C 0.06 1.67 5.28 -17.82 -0.09 1.58 16 3 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.51 -13.94 8.33 -34.44 -0.29 -14.23 16 8 H 0.05 1.46 7.44 -52.49 -0.39 1.07 16 9 C 0.04 1.08 1.65 -92.28 -0.15 0.92 16 10 H 0.02 0.46 6.58 -51.93 -0.34 0.12 16 11 C -0.10 -2.30 4.64 -25.69 -0.12 -2.42 16 12 C -0.12 -2.19 5.41 -27.39 -0.15 -2.34 16 13 C 0.07 1.14 5.16 -4.52 -0.02 1.12 16 14 N -0.54 -8.37 3.86 -230.34 -0.89 -9.26 16 15 C 0.08 1.06 2.36 -66.36 -0.16 0.91 16 16 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 17 C -0.13 -1.38 4.80 -25.62 -0.12 -1.51 16 18 C -0.07 -0.67 7.33 37.83 0.28 -0.39 16 19 S -0.31 -3.72 23.26 -107.50 -2.50 -6.22 16 20 C -0.06 -0.68 5.83 38.07 0.22 -0.46 16 21 C 0.07 1.17 4.75 -6.73 -0.03 1.14 16 22 C -0.10 -2.03 5.14 -27.08 -0.14 -2.17 16 23 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 24 H 0.04 0.93 7.97 -51.93 -0.41 0.52 16 25 H 0.08 2.00 6.51 -51.93 -0.34 1.66 16 26 H 0.06 1.09 7.26 -51.93 -0.38 0.72 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.96 6.66 -51.93 -0.35 0.62 16 29 H 0.06 0.87 5.83 -51.93 -0.30 0.56 16 30 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.08 0.88 7.03 -51.93 -0.37 0.52 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.10 1.17 7.06 -51.93 -0.37 0.81 16 35 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.06 0.87 5.86 -51.93 -0.30 0.57 16 37 H 0.02 0.31 7.54 -51.93 -0.39 -0.08 16 38 H 0.06 1.13 7.10 -51.93 -0.37 0.76 16 39 H 0.06 1.15 7.50 -51.93 -0.39 0.76 16 LS Contribution 297.50 15.07 4.48 4.48 Total: -1.00 -27.62 297.50 -10.44 -38.06 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -6.37 Total: -0.78 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: -0.78 Total: -17.86 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: -0.26 Total: -33.88 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -3.72 SS G_CDS: -2.50 Total: -6.22 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.62 -10.44 -38.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259761833.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.714 kcal (2) G-P(sol) polarization free energy of solvation -27.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds