Wall clock time and date at job start Mon Mar 30 2020 06:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00218 * 2 1 4 4 H 1.48497 * 109.47215 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47332 * 300.00137 * 3 2 1 6 6 H 1.48502 * 109.47073 * 59.99610 * 3 2 1 7 7 C 1.37869 * 119.99692 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99938 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00163 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.57280 * 300.24818 * 9 7 2 11 11 C 1.50455 * 109.68126 * 60.57200 * 9 7 2 12 12 C 1.54286 * 113.03659 * 212.03081 * 11 9 7 13 13 C 1.54073 * 112.28682 * 318.29615 * 12 11 9 14 14 N 1.44266 * 111.98098 * 318.91716 * 13 12 11 15 15 C 1.46901 * 110.99852 * 219.30701 * 14 13 12 16 16 H 1.08998 * 109.99303 * 296.51729 * 15 14 13 17 17 C 1.53860 * 109.97317 * 175.25249 * 15 14 13 18 18 C 1.54279 * 108.92377 * 193.38248 * 17 15 14 19 19 S 1.83096 * 104.65034 * 27.95215 * 18 17 15 20 20 C 1.55133 * 109.97721 * 57.78544 * 15 14 13 21 21 C 1.47801 * 109.46325 * 96.43494 * 14 13 12 22 22 C 1.45864 * 112.91968 * 276.73841 * 21 14 13 23 23 H 0.97008 * 119.99906 * 0.02562 * 1 2 3 24 24 H 1.09007 * 108.76673 * 332.94046 * 11 9 7 25 25 H 1.08990 * 108.77329 * 91.22157 * 11 9 7 26 26 H 1.09007 * 108.92189 * 79.01985 * 12 11 9 27 27 H 1.09001 * 108.92224 * 197.66975 * 12 11 9 28 28 H 1.09005 * 108.97980 * 198.26853 * 13 12 11 29 29 H 1.08996 * 108.97821 * 79.56053 * 13 12 11 30 30 H 1.09005 * 109.61128 * 73.46893 * 17 15 14 31 31 H 1.08991 * 109.60949 * 313.30014 * 17 15 14 32 32 H 1.09001 * 110.40244 * 269.16408 * 18 17 15 33 33 H 1.08992 * 110.39953 * 146.74518 * 18 17 15 34 34 H 1.09005 * 110.85401 * 43.30026 * 20 15 14 35 35 H 1.08998 * 110.85783 * 279.66001 * 20 15 14 36 36 H 1.08999 * 108.79588 * 37.62823 * 21 14 13 37 37 H 1.09002 * 108.79683 * 155.96315 * 21 14 13 38 38 H 1.08995 * 109.06034 * 181.87090 * 22 21 14 39 39 H 1.08998 * 109.05586 * 300.85757 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 1 0.6206 -2.5568 0.8869 11 6 0.3943 -2.5896 -1.2341 12 6 -0.9114 -3.3792 -1.0058 13 6 -0.6888 -4.6422 -0.1520 14 7 0.5255 -5.3319 -0.5143 15 6 0.3323 -6.7878 -0.4865 16 1 0.1012 -7.1138 0.5276 17 6 1.6021 -7.4962 -0.9897 18 6 1.2709 -8.9764 -1.2717 19 16 -0.5104 -8.9798 -1.6951 20 6 -0.8182 -7.1883 -1.4470 21 6 1.6143 -4.9245 0.3983 22 6 2.2528 -3.6753 -0.0011 23 1 -0.4850 0.8401 -0.0004 24 1 0.1414 -1.5807 -1.5603 25 1 0.9653 -3.0796 -2.0225 26 1 -1.6311 -2.7341 -0.5016 27 1 -1.3191 -3.6752 -1.9724 28 1 -1.5341 -5.3166 -0.2894 29 1 -0.6335 -4.3551 0.8980 30 1 2.3812 -7.4341 -0.2299 31 1 1.9490 -7.0181 -1.9057 32 1 1.4514 -9.5820 -0.3836 33 1 1.8615 -9.3447 -2.1104 34 1 -0.7424 -6.6472 -2.3902 35 1 -1.7891 -7.0223 -0.9801 36 1 1.2053 -4.8046 1.4016 37 1 2.3682 -5.7114 0.4189 38 1 3.0637 -3.4524 0.6923 39 1 2.6640 -3.7906 -1.0039 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259761840.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:55 Heat of formation + Delta-G solvation = -3.614634 kcal Electronic energy + Delta-G solvation = -17879.122393 eV Core-core repulsion = 15333.240983 eV Total energy + Delta-G solvation = -2545.881410 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.18583 -35.87670 -33.30916 -31.81819 -31.17339 -29.04696 -26.24334 -25.39141 -23.50854 -22.60748 -20.65647 -19.65223 -18.50690 -16.99911 -16.19097 -15.87707 -15.12186 -14.62770 -14.50541 -14.13292 -13.71844 -13.16474 -13.10461 -12.73739 -12.27709 -12.14996 -11.91054 -11.86531 -11.33885 -11.21531 -11.07171 -10.83592 -10.69301 -10.48548 -10.40488 -10.04953 -10.00508 -9.51064 -9.29512 -8.88894 -8.70298 -8.19511 -7.92842 -7.77049 -5.93985 -3.99666 1.74840 2.27644 3.31199 3.39643 3.43238 4.13067 4.47322 4.51114 4.71277 4.88011 5.06186 5.11057 5.35672 5.37074 5.44866 5.61581 5.62264 5.67400 5.80711 5.93899 5.94916 6.11070 6.19644 6.45533 6.53104 6.59148 6.68276 6.77571 7.00226 7.15404 7.40463 7.48769 7.57255 7.72264 7.85039 8.09138 8.22568 8.57613 9.06359 9.64417 11.11630 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.049609 B = 0.004932 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.279301 B = 5675.352095 C = 6028.605954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.060 3.940 3 Si 0.885 3.115 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.511 4.511 8 H 0.053 0.947 9 C 0.056 3.944 10 H 0.020 0.980 11 C -0.087 4.087 12 C -0.100 4.100 13 C 0.056 3.944 14 N -0.513 5.513 15 C 0.079 3.921 16 H 0.051 0.949 17 C -0.124 4.124 18 C -0.067 4.067 19 S -0.305 6.305 20 C -0.058 4.058 21 C 0.064 3.936 22 C -0.113 4.113 23 H 0.257 0.743 24 H 0.076 0.924 25 H 0.026 0.974 26 H 0.057 0.943 27 H 0.037 0.963 28 H 0.050 0.950 29 H 0.040 0.960 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.030 0.970 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.170 -14.472 -1.129 14.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.141 4.141 3 Si 0.714 3.286 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.549 4.549 8 H 0.071 0.929 9 C 0.037 3.963 10 H 0.038 0.962 11 C -0.125 4.125 12 C -0.138 4.138 13 C -0.073 4.073 14 N -0.238 5.238 15 C -0.031 4.031 16 H 0.069 0.931 17 C -0.162 4.162 18 C -0.216 4.216 19 S -0.080 6.080 20 C -0.206 4.206 21 C -0.062 4.062 22 C -0.151 4.151 23 H 0.067 0.933 24 H 0.095 0.905 25 H 0.045 0.955 26 H 0.076 0.924 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.048 0.952 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.573 -15.109 -1.949 15.245 hybrid contribution 0.903 1.643 1.182 2.216 sum 0.330 -13.467 -0.767 13.493 Atomic orbital electron populations 1.69971 1.05751 1.26031 1.50877 1.24946 0.94812 0.98845 0.95492 0.86643 0.80222 0.84279 0.77473 1.19898 1.21140 1.21202 1.21337 0.92855 0.90796 1.49960 0.92900 1.18415 0.92295 0.90954 0.94610 0.96154 1.21167 0.93233 0.99326 0.98794 1.21881 1.00225 0.94311 0.97419 1.22024 0.90318 0.96141 0.98787 1.61756 1.06920 1.01989 1.53125 1.22694 0.92968 0.90199 0.97244 0.93116 1.22331 0.98208 0.92063 1.03637 1.23916 0.93395 0.99770 1.04518 1.87497 1.13996 1.14634 1.91919 1.24367 1.01217 0.91473 1.03525 1.21161 0.93169 0.98597 0.93312 1.20708 0.99238 0.94662 1.00496 0.93296 0.90544 0.95519 0.92410 0.94426 0.93174 0.94184 0.89910 0.89378 0.89195 0.88658 0.87906 0.88181 0.95151 0.92938 0.92915 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.03 11.64 55.43 0.65 -24.38 16 2 C 0.06 1.64 5.05 -17.82 -0.09 1.55 16 3 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.51 -13.86 8.46 -34.44 -0.29 -14.15 16 8 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 9 C 0.06 1.34 1.77 -92.25 -0.16 1.18 16 10 H 0.02 0.54 7.15 -51.93 -0.37 0.17 16 11 C -0.09 -2.03 4.62 -27.33 -0.13 -2.15 16 12 C -0.10 -1.98 6.14 -25.50 -0.16 -2.14 16 13 C 0.06 0.95 4.89 -4.67 -0.02 0.93 16 14 N -0.51 -8.15 4.10 -229.65 -0.94 -9.10 16 15 C 0.08 1.03 2.22 -66.14 -0.15 0.88 16 16 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 17 C -0.12 -1.39 5.26 -25.61 -0.13 -1.53 16 18 C -0.07 -0.68 7.34 37.83 0.28 -0.40 16 19 S -0.31 -3.76 23.26 -107.50 -2.50 -6.26 16 20 C -0.06 -0.72 5.91 38.29 0.23 -0.49 16 21 C 0.06 1.08 4.80 -6.71 -0.03 1.05 16 22 C -0.11 -2.27 4.87 -29.31 -0.14 -2.42 16 23 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 24 H 0.08 2.04 5.91 -51.92 -0.31 1.73 16 25 H 0.03 0.60 7.38 -51.93 -0.38 0.22 16 26 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.74 5.67 -51.93 -0.29 0.45 16 29 H 0.04 0.73 6.51 -51.93 -0.34 0.40 16 30 H 0.08 0.87 6.74 -51.93 -0.35 0.52 16 31 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.10 1.20 6.99 -51.93 -0.36 0.84 16 36 H 0.03 0.53 7.24 -51.93 -0.38 0.15 16 37 H 0.05 0.76 5.86 -51.93 -0.30 0.45 16 38 H 0.05 1.05 8.01 -51.93 -0.42 0.64 16 39 H 0.05 1.07 7.58 -51.93 -0.39 0.68 16 LS Contribution 299.27 15.07 4.51 4.51 Total: -1.00 -27.58 299.27 -10.51 -38.09 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -6.40 Total: -1.31 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: -0.80 Total: -17.70 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: -0.30 Total: -33.48 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -3.76 SS G_CDS: -2.50 Total: -6.26 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.58 -10.51 -38.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259761840.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.472 kcal (2) G-P(sol) polarization free energy of solvation -27.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds