Wall clock time and date at job start Mon Mar 30 2020 06:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00218 * 2 1 4 4 H 1.48497 * 109.47215 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47332 * 300.00137 * 3 2 1 6 6 H 1.48502 * 109.47073 * 59.99610 * 3 2 1 7 7 C 1.37869 * 119.99692 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99938 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00163 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.57280 * 300.24818 * 9 7 2 11 11 C 1.50455 * 109.68126 * 60.57200 * 9 7 2 12 12 C 1.54286 * 113.03659 * 212.03081 * 11 9 7 13 13 C 1.54073 * 112.28682 * 318.29615 * 12 11 9 14 14 N 1.44266 * 111.98098 * 318.91716 * 13 12 11 15 15 C 1.46901 * 110.99852 * 219.30701 * 14 13 12 16 16 H 1.08998 * 109.99303 * 296.51729 * 15 14 13 17 17 C 1.53860 * 109.97317 * 175.25249 * 15 14 13 18 18 C 1.54279 * 108.92377 * 193.38248 * 17 15 14 19 19 S 1.83096 * 104.65034 * 27.95215 * 18 17 15 20 20 C 1.55133 * 109.97721 * 57.78544 * 15 14 13 21 21 C 1.47801 * 109.46325 * 96.43494 * 14 13 12 22 22 C 1.45864 * 112.91968 * 276.73841 * 21 14 13 23 23 H 0.97008 * 119.99906 * 0.02562 * 1 2 3 24 24 H 1.09007 * 108.76673 * 332.94046 * 11 9 7 25 25 H 1.08990 * 108.77329 * 91.22157 * 11 9 7 26 26 H 1.09007 * 108.92189 * 79.01985 * 12 11 9 27 27 H 1.09001 * 108.92224 * 197.66975 * 12 11 9 28 28 H 1.09005 * 108.97980 * 198.26853 * 13 12 11 29 29 H 1.08996 * 108.97821 * 79.56053 * 13 12 11 30 30 H 1.09005 * 109.61128 * 73.46893 * 17 15 14 31 31 H 1.08991 * 109.60949 * 313.30014 * 17 15 14 32 32 H 1.09001 * 110.40244 * 269.16408 * 18 17 15 33 33 H 1.08992 * 110.39953 * 146.74518 * 18 17 15 34 34 H 1.09005 * 110.85401 * 43.30026 * 20 15 14 35 35 H 1.08998 * 110.85783 * 279.66001 * 20 15 14 36 36 H 1.08999 * 108.79588 * 37.62823 * 21 14 13 37 37 H 1.09002 * 108.79683 * 155.96315 * 21 14 13 38 38 H 1.08995 * 109.06034 * 181.87090 * 22 21 14 39 39 H 1.08998 * 109.05586 * 300.85757 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 1 0.6206 -2.5568 0.8869 11 6 0.3943 -2.5896 -1.2341 12 6 -0.9114 -3.3792 -1.0058 13 6 -0.6888 -4.6422 -0.1520 14 7 0.5255 -5.3319 -0.5143 15 6 0.3323 -6.7878 -0.4865 16 1 0.1012 -7.1138 0.5276 17 6 1.6021 -7.4962 -0.9897 18 6 1.2709 -8.9764 -1.2717 19 16 -0.5104 -8.9798 -1.6951 20 6 -0.8182 -7.1883 -1.4470 21 6 1.6143 -4.9245 0.3983 22 6 2.2528 -3.6753 -0.0011 23 1 -0.4850 0.8401 -0.0004 24 1 0.1414 -1.5807 -1.5603 25 1 0.9653 -3.0796 -2.0225 26 1 -1.6311 -2.7341 -0.5016 27 1 -1.3191 -3.6752 -1.9724 28 1 -1.5341 -5.3166 -0.2894 29 1 -0.6335 -4.3551 0.8980 30 1 2.3812 -7.4341 -0.2299 31 1 1.9490 -7.0181 -1.9057 32 1 1.4514 -9.5820 -0.3836 33 1 1.8615 -9.3447 -2.1104 34 1 -0.7424 -6.6472 -2.3902 35 1 -1.7891 -7.0223 -0.9801 36 1 1.2053 -4.8046 1.4016 37 1 2.3682 -5.7114 0.4189 38 1 3.0637 -3.4524 0.6923 39 1 2.6640 -3.7906 -1.0039 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259761840.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:55 Heat of formation + Delta-G solvation = -18.468387 kcal Electronic energy + Delta-G solvation = -17879.766500 eV Core-core repulsion = 15333.240983 eV Total energy + Delta-G solvation = -2546.525518 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.52775 -37.32380 -34.88483 -33.37339 -32.84901 -30.18551 -27.93698 -26.82253 -24.93743 -24.14301 -21.88993 -20.98067 -20.24357 -18.42128 -17.83295 -16.96825 -16.52591 -16.34654 -15.85455 -15.42904 -14.92267 -14.72698 -14.62341 -14.01528 -13.55952 -13.51499 -13.31457 -13.00384 -12.91663 -12.83196 -12.60096 -12.48268 -12.25994 -12.00027 -11.85426 -11.50940 -11.32297 -11.17863 -10.90213 -10.71256 -10.65890 -10.22942 -9.22885 -8.70937 -8.04122 -6.16768 0.83896 1.38499 1.39945 1.42601 1.52936 2.45935 2.93370 3.23709 3.53227 3.77733 3.92192 4.10709 4.16099 4.19632 4.24466 4.39468 4.50146 4.60809 4.62710 4.73225 4.80528 4.85033 4.89852 4.93783 4.97998 5.09473 5.11976 5.18859 5.34799 5.43226 5.55167 5.73027 5.84264 6.06017 6.18719 6.28081 6.30288 6.52557 6.99363 7.50627 9.00257 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.049609 B = 0.004932 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.279301 B = 5675.352095 C = 6028.605954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.947 3.053 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.533 4.533 8 H 0.049 0.951 9 C 0.054 3.946 10 H -0.010 1.010 11 C -0.077 4.077 12 C -0.095 4.095 13 C 0.065 3.935 14 N -0.519 5.519 15 C 0.080 3.920 16 H 0.057 0.943 17 C -0.120 4.120 18 C -0.055 4.055 19 S -0.331 6.331 20 C -0.053 4.053 21 C 0.068 3.932 22 C -0.101 4.101 23 H 0.257 0.743 24 H 0.036 0.964 25 H 0.027 0.973 26 H 0.036 0.964 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.024 0.976 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.024 0.976 37 H 0.085 0.915 38 H 0.051 0.949 39 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.088 -16.131 -1.142 16.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.186 4.186 3 Si 0.773 3.227 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.571 4.571 8 H 0.067 0.933 9 C 0.035 3.965 10 H 0.008 0.992 11 C -0.115 4.115 12 C -0.133 4.133 13 C -0.064 4.064 14 N -0.244 5.244 15 C -0.029 4.029 16 H 0.075 0.925 17 C -0.158 4.158 18 C -0.203 4.203 19 S -0.106 6.106 20 C -0.201 4.201 21 C -0.059 4.059 22 C -0.139 4.139 23 H 0.066 0.934 24 H 0.055 0.945 25 H 0.045 0.955 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.042 0.958 30 H 0.115 0.885 31 H 0.098 0.902 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.112 0.888 35 H 0.123 0.877 36 H 0.042 0.958 37 H 0.103 0.897 38 H 0.069 0.931 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.353 -16.784 -1.964 16.903 hybrid contribution 0.627 2.148 1.164 2.522 sum 0.980 -14.636 -0.800 14.691 Atomic orbital electron populations 1.70098 1.06994 1.26670 1.51436 1.25671 0.95611 1.02041 0.95269 0.85681 0.79236 0.80363 0.77413 1.19229 1.20887 1.20851 1.21737 0.92947 0.92486 1.49935 0.93297 1.18375 0.92772 0.91804 0.93517 0.99171 1.20966 0.94734 0.97606 0.98189 1.21770 0.97818 0.95092 0.98641 1.21847 0.92116 0.95417 0.96972 1.61613 1.06044 1.03951 1.52819 1.22781 0.94276 0.88064 0.97817 0.92516 1.22292 0.97484 0.92521 1.03550 1.23985 0.91318 0.99139 1.05873 1.87637 1.16508 1.14304 1.92186 1.24281 1.01318 0.91561 1.02966 1.21032 0.94111 0.97899 0.92882 1.20550 0.98282 0.94674 1.00434 0.93380 0.94532 0.95468 0.94535 0.92873 0.90487 0.95796 0.88532 0.90231 0.87460 0.87205 0.88787 0.87747 0.95771 0.89668 0.93065 0.93132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.92 11.64 21.44 0.25 -52.67 16 2 C 0.01 0.70 5.05 84.65 0.43 1.13 16 3 Si 0.95 43.95 29.54 68.60 2.03 45.98 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 7 C -0.53 -29.47 8.46 25.60 0.22 -29.25 16 8 H 0.05 2.67 7.74 -2.91 -0.02 2.65 16 9 C 0.05 2.65 1.77 -11.85 -0.02 2.63 16 10 H -0.01 -0.54 7.15 -2.39 -0.02 -0.56 16 11 C -0.08 -3.65 4.62 30.21 0.14 -3.51 16 12 C -0.09 -3.79 6.14 31.39 0.19 -3.60 16 13 C 0.07 2.16 4.89 87.16 0.43 2.59 16 14 N -0.52 -15.58 4.10 -880.49 -3.61 -19.19 16 15 C 0.08 1.87 2.22 45.94 0.10 1.97 16 16 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 17 C -0.12 -2.29 5.26 31.32 0.16 -2.13 16 18 C -0.06 -0.91 7.34 72.42 0.53 -0.38 16 19 S -0.33 -7.36 23.26 -56.49 -1.31 -8.68 16 20 C -0.05 -1.21 5.91 72.71 0.43 -0.78 16 21 C 0.07 2.15 4.80 83.94 0.40 2.55 16 22 C -0.10 -4.02 4.87 28.92 0.14 -3.88 16 23 H 0.26 14.25 8.31 -92.70 -0.77 13.48 16 24 H 0.04 2.01 5.91 -2.38 -0.01 2.00 16 25 H 0.03 1.24 7.38 -2.39 -0.02 1.23 16 26 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 27 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.08 2.13 5.67 -2.38 -0.01 2.12 16 29 H 0.02 0.87 6.51 -2.39 -0.02 0.86 16 30 H 0.10 1.61 6.74 -2.38 -0.02 1.59 16 31 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 35 H 0.10 2.27 6.99 -2.39 -0.02 2.25 16 36 H 0.02 0.81 7.24 -2.39 -0.02 0.79 16 37 H 0.09 2.17 5.86 -2.39 -0.01 2.16 16 38 H 0.05 2.01 8.01 -2.39 -0.02 1.99 16 39 H 0.05 2.01 7.58 -2.39 -0.02 1.99 16 Total: -1.00 -60.25 299.27 1.52 -58.74 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 1.01 Total: 8.48 kcal Atomic # 6 Polarization: -35.81 SS G_CDS: 3.15 Total: -32.66 kcal Atomic # 7 Polarization: -68.50 SS G_CDS: -3.36 Total: -71.86 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: -7.36 SS G_CDS: -1.31 Total: -8.68 kcal Total: -60.25 1.52 -58.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259761840.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.268 kcal (2) G-P(sol) polarization free energy of solvation -60.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds