Wall clock time and date at job start Mon Mar 30 2020 06:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86799 * 119.99846 * 2 1 4 4 H 1.48507 * 109.47146 * 240.00273 * 3 2 1 5 5 H 1.48494 * 109.47179 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47267 * 120.00499 * 3 2 1 7 7 C 1.37871 * 119.99846 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99727 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00227 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47133 * 179.97438 * 9 7 2 11 11 H 1.09008 * 109.30530 * 54.26426 * 10 9 7 12 12 C 1.53110 * 109.43224 * 294.52277 * 10 9 7 13 13 S 1.81749 * 108.80703 * 302.91951 * 12 10 9 14 14 C 1.81746 * 102.21813 * 306.71402 * 13 12 10 15 15 C 1.53089 * 108.84307 * 53.26514 * 14 13 12 16 16 C 1.52576 * 109.95657 * 296.97423 * 15 14 13 17 17 H 1.08997 * 109.22593 * 310.39273 * 16 15 14 18 18 N 1.46906 * 109.22755 * 190.99586 * 16 15 14 19 19 C 1.47849 * 110.99690 * 55.05326 * 18 16 15 20 20 C 1.54905 * 104.79367 * 146.36321 * 19 18 16 21 21 C 1.55142 * 101.65555 * 322.93051 * 20 19 18 22 22 C 1.47439 * 110.99912 * 175.89644 * 18 16 15 23 23 H 0.96997 * 119.99913 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47245 * 60.00114 * 9 7 2 25 25 H 1.08998 * 109.46964 * 299.99639 * 9 7 2 26 26 H 1.08994 * 109.61299 * 183.11150 * 12 10 9 27 27 H 1.09006 * 109.67954 * 62.76718 * 12 10 9 28 28 H 1.08994 * 109.57630 * 293.45314 * 14 13 12 29 29 H 1.09004 * 109.57308 * 173.07743 * 14 13 12 30 30 H 1.09011 * 109.39113 * 176.82519 * 15 14 13 31 31 H 1.09003 * 109.31321 * 57.07387 * 15 14 13 32 32 H 1.08994 * 110.37571 * 27.53693 * 19 18 16 33 33 H 1.08995 * 110.37380 * 265.19388 * 19 18 16 34 34 H 1.09001 * 110.99199 * 204.83784 * 20 19 18 35 35 H 1.09004 * 110.99218 * 81.02175 * 20 19 18 36 36 H 1.08997 * 110.70525 * 154.03244 * 21 20 19 37 37 H 1.08998 * 110.70413 * 277.09525 * 21 20 19 38 38 H 1.08998 * 109.88585 * 117.34197 * 22 18 16 39 39 H 1.08993 * 109.89230 * 356.14913 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 1 2.9362 -3.5463 0.8324 12 6 3.0318 -3.6586 -1.3164 13 16 1.8593 -3.7563 -2.7016 14 6 0.8735 -5.2205 -2.2686 15 6 0.3309 -5.0486 -0.8474 16 6 1.4865 -4.9774 0.1462 17 1 2.1685 -5.8079 -0.0363 18 7 0.9566 -5.0782 1.5126 19 6 0.1373 -6.2982 1.6745 20 6 0.3769 -6.7442 3.1385 21 6 1.8787 -6.4041 3.3279 22 6 2.0493 -5.1117 2.5019 23 1 -0.4850 0.8400 0.0004 24 1 0.6247 -2.5563 -0.8920 25 1 0.6241 -2.5575 0.8880 26 1 3.7019 -4.5178 -1.3439 27 1 3.6130 -2.7396 -1.3939 28 1 1.5014 -6.1102 -2.3147 29 1 0.0428 -5.3210 -2.9671 30 1 -0.3083 -5.8960 -0.5991 31 1 -0.2508 -4.1284 -0.7925 32 1 0.4689 -7.0725 0.9828 33 1 -0.9168 -6.0714 1.5145 34 1 0.2011 -7.8136 3.2546 35 1 -0.2432 -6.1710 3.8278 36 1 2.1030 -6.2221 4.3789 37 1 2.5073 -7.2025 2.9337 38 1 1.9840 -4.2423 3.1561 39 1 3.0120 -5.1227 1.9910 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259774216.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:22 Heat of formation + Delta-G solvation = -4.741462 kcal Electronic energy + Delta-G solvation = -18066.880000 eV Core-core repulsion = 15520.949727 eV Total energy + Delta-G solvation = -2545.930273 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.42291 -36.17514 -32.90418 -31.34673 -30.51992 -28.68552 -27.03217 -25.40289 -23.20392 -22.19367 -20.88267 -20.50058 -18.22038 -16.93566 -16.02468 -15.73217 -15.37934 -14.41431 -13.86017 -13.71192 -13.44978 -13.33575 -13.19111 -12.98371 -12.39035 -12.21330 -11.94058 -11.73480 -11.25570 -11.14238 -10.97014 -10.87443 -10.82566 -10.74344 -10.50491 -10.37579 -9.95686 -9.69081 -9.28653 -8.87884 -8.82045 -8.16614 -7.85929 -6.80803 -5.82592 -3.82081 2.41271 3.21297 3.41299 3.45964 3.47810 4.19330 4.58247 4.75326 4.82164 5.01937 5.21072 5.37814 5.40216 5.44338 5.53604 5.60101 5.64038 5.72364 5.76680 5.83189 5.85951 5.90355 5.92911 6.01401 6.11466 6.18354 6.26758 6.39969 6.55587 6.67119 6.74970 7.17696 7.34680 7.52274 7.90063 8.14720 8.23848 8.60218 9.23594 9.78680 11.28570 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.018929 B = 0.007937 C = 0.006380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.888698 B = 3526.988856 C = 4387.392153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.882 3.118 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.511 4.511 8 H 0.046 0.954 9 C 0.030 3.970 10 C -0.082 4.082 11 H 0.068 0.932 12 C -0.060 4.060 13 S -0.253 6.253 14 C -0.081 4.081 15 C -0.123 4.123 16 C 0.088 3.912 17 H 0.022 0.978 18 N -0.511 5.511 19 C 0.042 3.958 20 C -0.129 4.129 21 C -0.142 4.142 22 C 0.044 3.956 23 H 0.257 0.743 24 H 0.043 0.957 25 H 0.029 0.971 26 H 0.057 0.943 27 H 0.109 0.891 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.062 0.938 31 H 0.101 0.899 32 H 0.039 0.961 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.080 0.920 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.166 -14.497 2.134 14.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.710 3.290 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.206 1.206 7 C -0.549 4.549 8 H 0.065 0.935 9 C -0.007 4.007 10 C -0.102 4.102 11 H 0.086 0.914 12 C -0.208 4.208 13 S -0.027 6.027 14 C -0.230 4.230 15 C -0.162 4.162 16 C -0.021 4.021 17 H 0.039 0.961 18 N -0.235 5.235 19 C -0.086 4.086 20 C -0.167 4.167 21 C -0.181 4.181 22 C -0.083 4.083 23 H 0.067 0.933 24 H 0.061 0.939 25 H 0.047 0.953 26 H 0.076 0.924 27 H 0.128 0.872 28 H 0.087 0.913 29 H 0.116 0.884 30 H 0.081 0.919 31 H 0.120 0.880 32 H 0.058 0.942 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.623 -13.266 1.300 13.428 hybrid contribution 1.225 -0.497 0.897 1.597 sum 2.848 -13.763 2.197 14.226 Atomic orbital electron populations 1.69952 1.05812 1.26158 1.51200 1.24900 0.94697 0.98603 0.95774 0.86832 0.79708 0.84109 0.78320 1.20483 1.21448 1.20598 1.21155 0.92386 0.91394 1.50013 0.93539 1.19310 0.93452 0.89059 0.98902 1.21426 0.98321 0.95814 0.94669 0.91362 1.23484 0.97696 1.04350 0.95294 1.86738 1.43318 1.38971 1.33632 1.23325 1.01515 0.97901 1.00222 1.21885 0.98265 1.04246 0.91782 1.21785 0.94876 0.97301 0.88112 0.96050 1.63532 1.20189 1.36422 1.03308 1.23042 0.99153 0.90903 0.95461 1.22698 0.96351 1.00521 0.97147 1.22800 0.96598 0.97976 1.00729 1.22809 0.93695 0.97433 0.94395 0.93281 0.93930 0.95302 0.92444 0.87226 0.91340 0.88416 0.91948 0.88017 0.94222 0.90360 0.91443 0.90634 0.91054 0.92087 0.90183 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.03 13.29 55.43 0.74 -26.30 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.88 22.06 29.54 -169.99 -5.02 17.04 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.51 -14.24 8.45 -34.44 -0.29 -14.53 16 8 H 0.05 1.26 7.09 -52.49 -0.37 0.89 16 9 C 0.03 0.75 3.39 -27.88 -0.09 0.66 16 10 C -0.08 -1.64 1.94 -90.78 -0.18 -1.82 16 11 H 0.07 1.39 6.41 -51.92 -0.33 1.06 16 12 C -0.06 -1.12 5.76 37.21 0.21 -0.91 16 13 S -0.25 -4.83 20.67 -107.50 -2.22 -7.06 16 14 C -0.08 -1.25 6.45 37.20 0.24 -1.01 16 15 C -0.12 -2.04 4.85 -26.90 -0.13 -2.17 16 16 C 0.09 1.50 0.96 -68.14 -0.07 1.43 16 17 H 0.02 0.35 8.06 -51.93 -0.42 -0.07 16 18 N -0.51 -8.42 4.62 -223.81 -1.03 -9.46 16 19 C 0.04 0.57 5.19 -2.30 -0.01 0.55 16 20 C -0.13 -1.47 7.08 -24.59 -0.17 -1.64 16 21 C -0.14 -1.66 6.94 -24.91 -0.17 -1.83 16 22 C 0.04 0.66 5.98 -2.84 -0.02 0.65 16 23 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 24 H 0.04 1.14 5.07 -51.93 -0.26 0.88 16 25 H 0.03 0.80 7.79 -51.93 -0.40 0.40 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.11 2.23 7.08 -51.92 -0.37 1.86 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.06 0.90 6.34 -51.92 -0.33 0.57 16 31 H 0.10 2.05 5.91 -51.93 -0.31 1.74 16 32 H 0.04 0.50 7.46 -51.93 -0.39 0.12 16 33 H 0.08 1.06 8.01 -51.93 -0.42 0.64 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.05 0.80 6.62 -51.93 -0.34 0.46 16 LS Contribution 301.16 15.07 4.54 4.54 Total: -1.00 -30.00 301.16 -10.24 -40.24 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -6.46 Total: -0.03 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: -0.78 Total: -18.97 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: -0.30 Total: -35.75 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: -4.83 SS G_CDS: -2.22 Total: -7.06 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.00 -10.24 -40.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259774216.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.497 kcal (2) G-P(sol) polarization free energy of solvation -30.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds