Wall clock time and date at job start Mon Mar 30 2020 06:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 119.99728 * 2 1 4 4 H 1.48498 * 109.46756 * 269.99878 * 3 2 1 5 5 H 1.48495 * 109.47111 * 30.00195 * 3 2 1 6 6 H 1.48502 * 109.47079 * 150.00449 * 3 2 1 7 7 C 1.37877 * 120.00440 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99855 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00545 * 179.97438 * 7 2 1 10 10 C 1.52994 * 109.47617 * 180.02562 * 9 7 2 11 11 H 1.08994 * 109.38983 * 54.71972 * 10 9 7 12 12 C 1.53107 * 109.38922 * 295.02339 * 10 9 7 13 13 S 1.81741 * 108.84226 * 176.82730 * 12 10 9 14 14 C 1.81554 * 102.17723 * 53.26868 * 13 12 10 15 15 C 1.53100 * 108.94091 * 306.66765 * 14 13 12 16 16 C 1.52580 * 109.39363 * 174.52974 * 10 9 7 17 17 H 1.08997 * 109.19411 * 70.52191 * 16 10 9 18 18 N 1.46900 * 109.22238 * 311.14292 * 16 10 9 19 19 C 1.48538 * 110.99941 * 178.11861 * 18 16 10 20 20 C 1.54941 * 103.22449 * 159.72101 * 19 18 16 21 21 C 1.54590 * 102.92308 * 322.58081 * 20 19 18 22 22 C 1.47901 * 110.99918 * 295.51195 * 18 16 10 23 23 H 0.96996 * 120.00692 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46797 * 59.99657 * 9 7 2 25 25 H 1.08998 * 109.46992 * 300.00625 * 9 7 2 26 26 H 1.09007 * 109.57079 * 296.63404 * 12 10 9 27 27 H 1.09000 * 109.57634 * 57.01574 * 12 10 9 28 28 H 1.09000 * 109.45110 * 186.86999 * 14 13 12 29 29 H 1.09001 * 109.60193 * 66.54841 * 14 13 12 30 30 H 1.09000 * 109.38802 * 302.97148 * 15 14 13 31 31 H 1.08995 * 109.38911 * 183.16416 * 15 14 13 32 32 H 1.08998 * 110.66021 * 278.15053 * 19 18 16 33 33 H 1.08994 * 110.66782 * 41.28172 * 19 18 16 34 34 H 1.09000 * 110.71848 * 204.22097 * 20 19 18 35 35 H 1.08996 * 110.87497 * 81.01619 * 20 19 18 36 36 H 1.08997 * 110.30984 * 263.04136 * 21 20 19 37 37 H 1.09001 * 110.39439 * 140.91952 * 21 20 19 38 38 H 1.09003 * 109.91840 * 333.50791 * 22 18 16 39 39 H 1.09006 * 109.92005 * 94.60847 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6364 -0.0023 11 1 3.5821 -3.1750 -0.8418 12 6 3.6156 -3.3202 1.3061 13 16 4.1459 -5.0576 1.2495 14 6 5.9093 -4.9068 0.8448 15 6 6.0588 -4.0457 -0.4122 16 6 5.5412 -2.6364 -0.1401 17 1 5.9846 -2.2631 0.7830 18 7 5.9259 -1.7566 -1.2518 19 6 7.4032 -1.6920 -1.3927 20 6 7.5992 -1.2002 -2.8489 21 6 6.4661 -1.9225 -3.6132 22 6 5.4205 -2.2786 -2.5401 23 1 -0.4851 0.8399 0.0004 24 1 3.8751 -0.6803 0.8888 25 1 3.8745 -0.6799 -0.8911 26 1 4.0976 -2.8183 2.1452 27 1 2.5329 -3.2724 1.4225 28 1 6.3254 -5.8973 0.6606 29 1 6.4360 -4.4359 1.6748 30 1 5.4861 -4.4907 -1.2259 31 1 7.1105 -3.9967 -0.6944 32 1 7.8261 -0.9785 -0.6855 33 1 7.8461 -2.6786 -1.2569 34 1 8.5748 -1.5021 -3.2298 35 1 7.4794 -0.1188 -2.9131 36 1 6.8462 -2.8279 -4.0863 37 1 6.0301 -1.2602 -4.3611 38 1 5.3021 -3.3606 -2.4816 39 1 4.4645 -1.8131 -2.7800 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259774222.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:26 Heat of formation + Delta-G solvation = -20.781917 kcal Electronic energy + Delta-G solvation = -18087.708768 eV Core-core repulsion = 15541.082928 eV Total energy + Delta-G solvation = -2546.625840 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.88128 -37.31645 -35.06019 -33.39509 -31.68259 -29.76078 -29.47186 -26.66156 -25.06199 -23.49026 -22.09284 -21.53833 -20.14898 -18.81208 -17.61545 -17.39314 -16.67370 -16.31139 -15.72343 -15.19071 -14.85127 -14.61751 -14.50388 -14.44245 -14.12277 -13.83248 -13.49154 -12.98663 -12.88254 -12.67842 -12.51707 -12.39553 -12.26847 -12.04305 -11.90509 -11.87028 -11.58841 -11.39770 -11.19808 -10.92608 -10.73891 -10.50587 -9.12812 -8.66806 -8.25017 -6.26188 0.86924 1.36880 1.37325 1.50972 1.63151 2.38831 3.06803 3.11657 3.57900 3.75639 3.88082 3.98413 4.00997 4.08639 4.14574 4.22800 4.41886 4.45052 4.53827 4.59685 4.68070 4.79328 4.85221 4.90628 4.95405 5.02880 5.07549 5.13870 5.14783 5.18055 5.29582 5.39143 5.53097 5.65808 5.73819 6.09313 6.21451 6.33960 6.81537 7.37525 8.91744 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.015572 B = 0.009496 C = 0.006501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.670315 B = 2947.878995 C = 4305.777198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.006 3.994 3 Si 0.946 3.054 4 H -0.271 1.271 5 H -0.288 1.288 6 H -0.249 1.249 7 C -0.518 4.518 8 H 0.031 0.969 9 C 0.015 3.985 10 C -0.054 4.054 11 H 0.051 0.949 12 C -0.050 4.050 13 S -0.316 6.316 14 C -0.061 4.061 15 C -0.147 4.147 16 C 0.081 3.919 17 H 0.079 0.921 18 N -0.523 5.523 19 C 0.026 3.974 20 C -0.117 4.117 21 C -0.126 4.126 22 C 0.027 3.973 23 H 0.263 0.737 24 H 0.009 0.991 25 H 0.034 0.966 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.123 0.877 29 H 0.094 0.906 30 H 0.069 0.931 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.053 0.947 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.975 -6.292 -3.196 21.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.190 4.190 3 Si 0.771 3.229 4 H -0.197 1.197 5 H -0.215 1.215 6 H -0.172 1.172 7 C -0.556 4.556 8 H 0.050 0.950 9 C -0.024 4.024 10 C -0.075 4.075 11 H 0.070 0.930 12 C -0.199 4.199 13 S -0.089 6.089 14 C -0.210 4.210 15 C -0.187 4.187 16 C -0.028 4.028 17 H 0.097 0.903 18 N -0.246 5.246 19 C -0.101 4.101 20 C -0.155 4.155 21 C -0.164 4.164 22 C -0.101 4.101 23 H 0.072 0.928 24 H 0.027 0.973 25 H 0.052 0.948 26 H 0.100 0.900 27 H 0.101 0.899 28 H 0.141 0.859 29 H 0.113 0.887 30 H 0.088 0.912 31 H 0.120 0.880 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.112 0.888 35 H 0.083 0.917 36 H 0.101 0.899 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 19.011 -6.620 -2.883 20.336 hybrid contribution 0.076 1.109 -0.201 1.130 sum 19.087 -5.511 -3.084 20.104 Atomic orbital electron populations 1.70070 1.08210 1.27799 1.53461 1.25899 0.95416 1.03123 0.94579 0.85709 0.79442 0.78838 0.78914 1.19662 1.21456 1.17234 1.21524 0.92262 0.92662 1.49180 0.95049 1.19352 0.92841 0.93323 0.96880 1.21021 0.94099 0.97068 0.95273 0.93012 1.23362 1.03985 0.91832 1.00694 1.86783 1.14403 1.14259 1.93489 1.23378 0.92008 1.04969 1.00612 1.22381 1.03206 0.95426 0.97682 1.21730 0.94535 0.91204 0.95374 0.90254 1.64933 1.10100 1.46797 1.02795 1.23432 0.87600 1.01028 0.98037 1.22447 0.98840 1.00365 0.93819 1.22381 0.95611 1.01153 0.97248 1.22903 0.98788 0.98634 0.89730 0.92798 0.97313 0.94823 0.89965 0.89910 0.85906 0.88711 0.91203 0.88015 0.90141 0.91580 0.88813 0.91719 0.89933 0.91462 0.92902 0.93239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.05 13.96 21.45 0.30 -60.75 16 2 C 0.01 0.36 5.47 84.66 0.46 0.82 16 3 Si 0.95 46.03 27.47 68.60 1.88 47.92 16 4 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 6 H -0.25 -11.39 6.54 99.48 0.65 -10.73 16 7 C -0.52 -30.00 8.92 25.60 0.23 -29.77 16 8 H 0.03 2.01 7.31 -2.91 -0.02 1.99 16 9 C 0.02 0.71 3.31 29.84 0.10 0.81 16 10 C -0.05 -2.08 1.24 -10.90 -0.01 -2.10 16 11 H 0.05 2.20 7.58 -2.39 -0.02 2.18 16 12 C -0.05 -1.90 5.58 72.02 0.40 -1.50 16 13 S -0.32 -10.03 22.33 -56.49 -1.26 -11.29 16 14 C -0.06 -1.35 6.43 72.02 0.46 -0.88 16 15 C -0.15 -3.34 4.33 30.49 0.13 -3.21 16 16 C 0.08 2.37 1.59 44.64 0.07 2.44 16 17 H 0.08 2.30 8.08 -2.39 -0.02 2.28 16 18 N -0.52 -15.21 4.00 -859.45 -3.44 -18.66 16 19 C 0.03 0.54 6.40 86.65 0.55 1.10 16 20 C -0.12 -2.17 7.06 31.80 0.22 -1.95 16 21 C -0.13 -2.65 6.93 31.47 0.22 -2.43 16 22 C 0.03 0.77 5.24 86.45 0.45 1.23 16 23 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 24 H 0.01 0.41 7.20 -2.39 -0.02 0.39 16 25 H 0.03 1.61 5.99 -2.39 -0.01 1.60 16 26 H 0.08 2.92 8.14 -2.38 -0.02 2.90 16 27 H 0.08 3.72 6.87 -2.39 -0.02 3.71 16 28 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.07 1.77 6.27 -2.39 -0.01 1.75 16 31 H 0.10 1.78 5.64 -2.39 -0.01 1.77 16 32 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.07 1.13 5.57 -2.39 -0.01 1.12 16 34 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.05 1.44 5.46 -2.39 -0.01 1.43 16 39 H 0.05 1.74 7.78 -2.38 -0.02 1.72 16 Total: -1.00 -67.09 298.20 1.73 -65.36 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 0.96 Total: 12.87 kcal Atomic # 6 Polarization: -38.73 SS G_CDS: 3.29 Total: -35.44 kcal Atomic # 7 Polarization: -76.26 SS G_CDS: -3.14 Total: -79.41 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.88 Total: 47.92 kcal Atomic # 16 Polarization: -10.03 SS G_CDS: -1.26 Total: -11.29 kcal Total: -67.09 1.73 -65.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259774222.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.574 kcal (2) G-P(sol) polarization free energy of solvation -67.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds