Wall clock time and date at job start Mon Mar 30 2020 06:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86809 * 119.99949 * 2 1 4 4 H 1.48495 * 109.47162 * 239.99829 * 3 2 1 5 5 H 1.48506 * 109.46749 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47056 * 119.99849 * 3 2 1 7 7 C 1.37876 * 120.00226 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99912 * 180.27571 * 7 2 1 9 9 C 1.50700 * 119.99870 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47070 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.57357 * 54.24222 * 10 9 7 12 12 S 1.81744 * 109.57250 * 293.86279 * 10 9 7 13 13 C 1.81749 * 102.22045 * 186.92910 * 12 10 9 14 14 C 1.53097 * 108.84256 * 53.26215 * 13 12 10 15 15 C 1.52584 * 109.95362 * 296.97733 * 14 13 12 16 16 C 1.52581 * 110.72701 * 70.67715 * 15 14 13 17 17 H 1.08997 * 109.38997 * 49.46917 * 16 15 14 18 18 N 1.46899 * 109.38967 * 169.17609 * 16 15 14 19 19 C 1.48538 * 110.99722 * 299.49802 * 18 16 15 20 20 C 1.54940 * 103.22438 * 159.72211 * 19 18 16 21 21 C 1.54594 * 102.92275 * 322.58790 * 20 19 18 22 22 C 1.47897 * 111.00060 * 56.89636 * 18 16 15 23 23 H 0.97001 * 120.00174 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.46754 * 299.99751 * 9 7 2 25 25 H 1.08992 * 109.47079 * 59.99587 * 9 7 2 26 26 H 1.09001 * 109.57435 * 293.45336 * 13 12 10 27 27 H 1.08994 * 109.68478 * 173.13640 * 13 12 10 28 28 H 1.09003 * 109.39113 * 176.83351 * 14 13 12 29 29 H 1.08994 * 109.31121 * 57.07305 * 14 13 12 30 30 H 1.08998 * 109.22645 * 310.35164 * 15 14 13 31 31 H 1.09009 * 109.18886 * 190.97608 * 15 14 13 32 32 H 1.09001 * 110.66641 * 278.15675 * 19 18 16 33 33 H 1.08995 * 110.66754 * 41.29099 * 19 18 16 34 34 H 1.09001 * 110.72390 * 204.22829 * 20 19 18 35 35 H 1.09006 * 110.72309 * 80.94429 * 20 19 18 36 36 H 1.09003 * 110.30844 * 263.03952 * 21 20 19 37 37 H 1.08994 * 110.30825 * 140.87095 * 21 20 19 38 38 H 1.08994 * 109.92059 * 333.51046 * 22 18 16 39 39 H 1.09000 * 109.91614 * 94.80880 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0050 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 1 2.9382 -3.5492 0.8358 12 16 3.1688 -3.6753 -1.5635 13 6 4.1130 -5.2234 -1.4400 14 6 3.1447 -6.3705 -1.1396 15 6 2.4748 -6.1458 0.2128 16 6 1.4873 -4.9849 0.1400 17 1 0.8338 -5.1192 -0.7220 18 7 0.6765 -4.9568 1.3646 19 6 -0.0942 -6.2168 1.5218 20 6 -0.4357 -6.2373 3.0329 21 6 0.8408 -5.6567 3.6837 22 6 1.5337 -4.8559 2.5656 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5566 0.8904 25 1 0.6248 -2.5570 -0.8896 26 1 4.8439 -5.1422 -0.6355 27 1 4.6266 -5.4162 -2.3818 28 1 3.6939 -7.3118 -1.1193 29 1 2.3830 -6.4126 -1.9181 30 1 3.2376 -5.9219 0.9584 31 1 1.9430 -7.0517 0.5042 32 1 -1.0040 -6.1886 0.9221 33 1 0.5178 -7.0780 1.2540 34 1 -0.6130 -7.2572 3.3745 35 1 -1.2977 -5.6039 3.2422 36 1 1.4888 -6.4619 4.0298 37 1 0.5774 -4.9993 4.5123 38 1 2.5155 -5.2814 2.3579 39 1 1.6339 -3.8123 2.8638 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259784079.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:15 Heat of formation + Delta-G solvation = -5.565543 kcal Electronic energy + Delta-G solvation = -17919.695887 eV Core-core repulsion = 15373.729879 eV Total energy + Delta-G solvation = -2545.966008 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.52061 -35.72187 -33.59680 -31.98065 -30.01222 -28.62316 -27.37947 -25.64385 -22.92063 -21.90514 -20.92519 -20.47495 -18.99392 -16.65910 -16.18226 -15.66796 -15.08834 -14.67345 -14.41072 -14.15750 -13.82596 -13.29481 -13.17274 -12.71956 -12.40546 -12.10903 -11.72570 -11.56478 -11.26384 -11.22306 -11.16098 -10.95340 -10.86330 -10.70304 -10.50285 -10.35078 -10.17065 -9.97012 -9.39443 -9.14745 -8.81489 -8.22607 -7.87927 -6.89818 -5.88026 -3.88387 2.46851 3.30752 3.41874 3.45223 3.49134 4.41002 4.55457 4.79048 4.80946 4.91877 5.01849 5.08952 5.17118 5.35182 5.47310 5.48953 5.58394 5.62378 5.66773 5.81685 5.88422 5.93264 5.95201 5.96431 6.01083 6.11862 6.21295 6.25133 6.30905 6.39127 6.59273 6.82726 7.25952 7.41654 7.81600 7.90201 8.12291 8.50265 9.16715 9.73550 11.22890 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.018161 B = 0.008113 C = 0.006121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.378853 B = 3450.405530 C = 4572.997315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.515 4.515 8 H 0.057 0.943 9 C 0.049 3.951 10 C -0.020 4.020 11 H 0.071 0.929 12 S -0.236 6.236 13 C -0.107 4.107 14 C -0.111 4.111 15 C -0.166 4.166 16 C 0.081 3.919 17 H 0.089 0.911 18 N -0.491 5.491 19 C 0.027 3.973 20 C -0.122 4.122 21 C -0.130 4.130 22 C 0.028 3.972 23 H 0.259 0.741 24 H 0.051 0.949 25 H 0.022 0.978 26 H 0.072 0.928 27 H 0.093 0.907 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.045 0.955 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.045 0.955 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.137 -15.171 3.381 15.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.716 3.284 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.553 4.553 8 H 0.076 0.924 9 C 0.011 3.989 10 C -0.149 4.149 11 H 0.090 0.910 12 S -0.008 6.008 13 C -0.255 4.255 14 C -0.151 4.151 15 C -0.204 4.204 16 C -0.030 4.030 17 H 0.107 0.893 18 N -0.214 5.214 19 C -0.101 4.101 20 C -0.160 4.160 21 C -0.168 4.168 22 C -0.099 4.099 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.040 0.960 26 H 0.090 0.910 27 H 0.112 0.888 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.063 0.937 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.655 -13.814 2.487 14.285 hybrid contribution 1.165 -0.617 0.999 1.654 sum 3.820 -14.431 3.486 15.329 Atomic orbital electron populations 1.69962 1.05913 1.26436 1.51015 1.24943 0.94736 0.98926 0.95550 0.86723 0.79620 0.83486 0.78576 1.20241 1.21468 1.20436 1.21231 0.93096 0.90830 1.50179 0.92440 1.18949 0.92522 0.88563 0.98909 1.23467 0.99420 0.98239 0.93782 0.91020 1.87413 1.55536 1.26862 1.30988 1.23477 1.00178 0.97256 1.04586 1.21616 0.98449 0.97355 0.97633 1.22305 0.99976 1.00213 0.97941 1.22176 0.93511 0.93523 0.93772 0.89290 1.65060 1.22630 1.32640 1.01104 1.23345 0.98433 0.91740 0.96615 1.22449 0.98353 1.00364 0.94805 1.22391 0.96785 0.99178 0.98440 1.22958 0.95237 1.01529 0.90225 0.93138 0.93076 0.96012 0.90969 0.88803 0.92029 0.90893 0.91748 0.91307 0.90228 0.93679 0.91693 0.90681 0.92204 0.91164 0.93680 0.89680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.20 13.29 55.43 0.74 -26.46 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.89 22.30 29.54 -169.99 -5.02 17.28 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.51 -14.65 8.56 -34.44 -0.29 -14.94 16 8 H 0.06 1.63 7.66 -52.49 -0.40 1.23 16 9 C 0.05 1.26 4.35 -27.88 -0.12 1.14 16 10 C -0.02 -0.42 1.80 -26.68 -0.05 -0.47 16 11 H 0.07 1.52 7.38 -51.93 -0.38 1.13 16 12 S -0.24 -4.70 21.10 -107.50 -2.27 -6.97 16 13 C -0.11 -1.55 6.45 37.21 0.24 -1.31 16 14 C -0.11 -1.43 5.75 -26.89 -0.15 -1.59 16 15 C -0.17 -2.28 4.21 -27.16 -0.11 -2.40 16 16 C 0.08 1.38 1.62 -67.88 -0.11 1.27 16 17 H 0.09 1.63 8.06 -51.93 -0.42 1.21 16 18 N -0.49 -8.18 4.31 -222.70 -0.96 -9.14 16 19 C 0.03 0.36 6.40 -1.89 -0.01 0.34 16 20 C -0.12 -1.44 7.06 -24.87 -0.18 -1.61 16 21 C -0.13 -1.59 6.93 -25.37 -0.18 -1.77 16 22 C 0.03 0.43 5.30 -2.75 -0.01 0.42 16 23 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 24 H 0.05 1.41 7.35 -51.93 -0.38 1.03 16 25 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.97 8.05 -51.93 -0.42 0.55 16 30 H 0.06 0.91 6.28 -51.93 -0.33 0.58 16 31 H 0.07 0.86 5.63 -51.92 -0.29 0.56 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.05 0.55 5.57 -51.93 -0.29 0.26 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.05 0.66 5.43 -51.93 -0.28 0.38 16 39 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 LS Contribution 304.60 15.07 4.59 4.59 Total: -1.00 -30.20 304.60 -10.56 -40.75 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -6.56 Total: -0.75 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: -1.08 Total: -19.29 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: -0.22 Total: -35.60 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Atomic # 16 Polarization: -4.70 SS G_CDS: -2.27 Total: -6.97 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.20 -10.56 -40.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259784079.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.187 kcal (2) G-P(sol) polarization free energy of solvation -30.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds