Wall clock time and date at job start Mon Mar 30 2020 06:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86809 * 119.99949 * 2 1 4 4 H 1.48495 * 109.47162 * 239.99829 * 3 2 1 5 5 H 1.48506 * 109.46749 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47056 * 119.99849 * 3 2 1 7 7 C 1.37876 * 120.00226 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99912 * 180.27571 * 7 2 1 9 9 C 1.50700 * 119.99870 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47070 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.57357 * 54.24222 * 10 9 7 12 12 S 1.81744 * 109.57250 * 293.86279 * 10 9 7 13 13 C 1.81749 * 102.22045 * 186.92910 * 12 10 9 14 14 C 1.53097 * 108.84256 * 53.26215 * 13 12 10 15 15 C 1.52584 * 109.95362 * 296.97733 * 14 13 12 16 16 C 1.52581 * 110.72701 * 70.67715 * 15 14 13 17 17 H 1.08997 * 109.38997 * 49.46917 * 16 15 14 18 18 N 1.46899 * 109.38967 * 169.17609 * 16 15 14 19 19 C 1.48538 * 110.99722 * 299.49802 * 18 16 15 20 20 C 1.54940 * 103.22438 * 159.72211 * 19 18 16 21 21 C 1.54594 * 102.92275 * 322.58790 * 20 19 18 22 22 C 1.47897 * 111.00060 * 56.89636 * 18 16 15 23 23 H 0.97001 * 120.00174 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.46754 * 299.99751 * 9 7 2 25 25 H 1.08992 * 109.47079 * 59.99587 * 9 7 2 26 26 H 1.09001 * 109.57435 * 293.45336 * 13 12 10 27 27 H 1.08994 * 109.68478 * 173.13640 * 13 12 10 28 28 H 1.09003 * 109.39113 * 176.83351 * 14 13 12 29 29 H 1.08994 * 109.31121 * 57.07305 * 14 13 12 30 30 H 1.08998 * 109.22645 * 310.35164 * 15 14 13 31 31 H 1.09009 * 109.18886 * 190.97608 * 15 14 13 32 32 H 1.09001 * 110.66641 * 278.15675 * 19 18 16 33 33 H 1.08995 * 110.66754 * 41.29099 * 19 18 16 34 34 H 1.09001 * 110.72390 * 204.22829 * 20 19 18 35 35 H 1.09006 * 110.72309 * 80.94429 * 20 19 18 36 36 H 1.09003 * 110.30844 * 263.03952 * 21 20 19 37 37 H 1.08994 * 110.30825 * 140.87095 * 21 20 19 38 38 H 1.08994 * 109.92059 * 333.51046 * 22 18 16 39 39 H 1.09000 * 109.91614 * 94.80880 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0050 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 1 2.9382 -3.5492 0.8358 12 16 3.1688 -3.6753 -1.5635 13 6 4.1130 -5.2234 -1.4400 14 6 3.1447 -6.3705 -1.1396 15 6 2.4748 -6.1458 0.2128 16 6 1.4873 -4.9849 0.1400 17 1 0.8338 -5.1192 -0.7220 18 7 0.6765 -4.9568 1.3646 19 6 -0.0942 -6.2168 1.5218 20 6 -0.4357 -6.2373 3.0329 21 6 0.8408 -5.6567 3.6837 22 6 1.5337 -4.8559 2.5656 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5566 0.8904 25 1 0.6248 -2.5570 -0.8896 26 1 4.8439 -5.1422 -0.6355 27 1 4.6266 -5.4162 -2.3818 28 1 3.6939 -7.3118 -1.1193 29 1 2.3830 -6.4126 -1.9181 30 1 3.2376 -5.9219 0.9584 31 1 1.9430 -7.0517 0.5042 32 1 -1.0040 -6.1886 0.9221 33 1 0.5178 -7.0780 1.2540 34 1 -0.6130 -7.2572 3.3745 35 1 -1.2977 -5.6039 3.2422 36 1 1.4888 -6.4619 4.0298 37 1 0.5774 -4.9993 4.5123 38 1 2.5155 -5.2814 2.3579 39 1 1.6339 -3.8123 2.8638 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259784079.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:15 Heat of formation + Delta-G solvation = -23.467246 kcal Electronic energy + Delta-G solvation = -17920.472163 eV Core-core repulsion = 15373.729879 eV Total energy + Delta-G solvation = -2546.742284 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.74628 -36.92203 -35.50841 -33.59806 -31.61372 -29.75729 -28.65782 -27.41831 -24.58618 -23.17122 -22.24739 -21.74413 -20.33140 -18.37221 -17.99501 -16.82389 -16.55308 -16.39113 -15.72505 -15.62667 -15.08238 -14.71961 -14.50217 -14.10280 -13.85476 -13.53823 -13.30206 -13.01500 -12.93026 -12.53018 -12.45979 -12.41901 -12.24576 -12.08624 -11.90205 -11.75856 -11.73317 -11.28786 -11.24072 -11.17005 -10.55985 -10.32214 -9.10517 -8.50095 -8.13896 -6.21912 0.99226 1.37892 1.41436 1.48840 1.85751 2.43093 3.18952 3.22465 3.58806 3.71649 3.85970 3.91147 3.99930 4.09326 4.16129 4.27729 4.37396 4.48050 4.54297 4.64637 4.68371 4.84756 4.89048 4.91371 4.97998 5.00996 5.02213 5.11256 5.12057 5.22841 5.30475 5.39003 5.54744 5.70189 5.88203 6.09476 6.19252 6.28194 6.91541 7.44143 8.97321 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.018161 B = 0.008113 C = 0.006121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.378853 B = 3450.405530 C = 4572.997315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.955 3.045 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.527 4.527 8 H 0.054 0.946 9 C 0.064 3.936 10 C -0.004 4.004 11 H 0.062 0.938 12 S -0.306 6.306 13 C -0.083 4.083 14 C -0.107 4.107 15 C -0.155 4.155 16 C 0.089 3.911 17 H 0.070 0.930 18 N -0.527 5.527 19 C 0.027 3.973 20 C -0.116 4.116 21 C -0.123 4.123 22 C 0.029 3.971 23 H 0.261 0.739 24 H 0.023 0.977 25 H -0.017 1.017 26 H 0.082 0.918 27 H 0.117 0.883 28 H 0.101 0.899 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.097 0.903 35 H 0.061 0.939 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.055 0.945 39 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.755 -17.518 3.921 18.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.194 4.194 3 Si 0.780 3.220 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.565 4.565 8 H 0.072 0.928 9 C 0.027 3.973 10 C -0.133 4.133 11 H 0.080 0.920 12 S -0.080 6.080 13 C -0.231 4.231 14 C -0.147 4.147 15 C -0.194 4.194 16 C -0.021 4.021 17 H 0.089 0.911 18 N -0.251 5.251 19 C -0.100 4.100 20 C -0.154 4.154 21 C -0.161 4.161 22 C -0.099 4.099 23 H 0.070 0.930 24 H 0.041 0.959 25 H 0.001 0.999 26 H 0.101 0.899 27 H 0.135 0.865 28 H 0.120 0.880 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.111 0.889 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.115 0.885 35 H 0.080 0.920 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.275 -16.172 3.037 17.000 hybrid contribution 0.670 0.085 0.797 1.045 sum 4.945 -16.087 3.834 17.261 Atomic orbital electron populations 1.70101 1.07531 1.27394 1.52062 1.25833 0.95636 1.02789 0.95176 0.85649 0.78413 0.78933 0.78956 1.19742 1.20755 1.19243 1.21560 0.93093 0.92217 1.49678 0.92759 1.18597 0.92779 0.90379 0.95589 1.23092 0.98268 0.98362 0.93553 0.91988 1.87479 1.57067 1.32552 1.30875 1.23567 0.99612 0.93674 1.06265 1.21621 0.98233 0.98074 0.96740 1.22204 0.99193 0.99192 0.98771 1.21937 0.93776 0.92862 0.93565 0.91148 1.64924 1.23488 1.35357 1.01285 1.23415 0.98000 0.90816 0.97790 1.22451 0.97519 1.01905 0.93521 1.22375 0.97152 0.99466 0.97140 1.22897 0.96081 1.00004 0.90917 0.93046 0.95859 0.99915 0.89937 0.86517 0.88042 0.91280 0.91546 0.88945 0.90857 0.91533 0.88493 0.91984 0.89520 0.91318 0.92717 0.93455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.83 13.29 21.45 0.28 -58.55 16 2 C 0.00 0.19 5.46 84.65 0.46 0.65 16 3 Si 0.96 46.72 29.54 68.60 2.03 48.75 16 4 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 5 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 6 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 7 C -0.53 -31.30 8.56 25.60 0.22 -31.08 16 8 H 0.05 3.18 7.66 -2.91 -0.02 3.16 16 9 C 0.06 3.55 4.35 29.85 0.13 3.68 16 10 C 0.00 -0.17 1.80 30.63 0.06 -0.11 16 11 H 0.06 2.72 7.38 -2.39 -0.02 2.70 16 12 S -0.31 -12.39 21.10 -56.49 -1.19 -13.58 16 13 C -0.08 -2.20 6.45 72.01 0.46 -1.73 16 14 C -0.11 -2.38 5.75 30.49 0.18 -2.20 16 15 C -0.16 -3.84 4.21 30.32 0.13 -3.71 16 16 C 0.09 3.07 1.62 44.81 0.07 3.14 16 17 H 0.07 2.64 8.06 -2.39 -0.02 2.63 16 18 N -0.53 -17.73 4.31 -858.49 -3.70 -21.43 16 19 C 0.03 0.68 6.40 86.65 0.55 1.24 16 20 C -0.12 -2.49 7.06 31.80 0.22 -2.27 16 21 C -0.12 -2.80 6.93 31.47 0.22 -2.58 16 22 C 0.03 0.88 5.30 86.45 0.46 1.33 16 23 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 24 H 0.02 1.39 7.35 -2.39 -0.02 1.37 16 25 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 26 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 28 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.07 1.64 8.05 -2.39 -0.02 1.62 16 30 H 0.07 1.66 6.28 -2.39 -0.01 1.64 16 31 H 0.09 1.90 5.63 -2.38 -0.01 1.88 16 32 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.07 1.39 5.57 -2.39 -0.01 1.38 16 34 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 36 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.05 1.53 5.43 -2.39 -0.01 1.51 16 39 H 0.05 1.75 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -69.42 304.60 1.59 -67.83 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 1.01 Total: 10.62 kcal Atomic # 6 Polarization: -36.80 SS G_CDS: 3.16 Total: -33.64 kcal Atomic # 7 Polarization: -76.56 SS G_CDS: -3.41 Total: -79.98 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Atomic # 16 Polarization: -12.39 SS G_CDS: -1.19 Total: -13.58 kcal Total: -69.42 1.59 -67.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259784079.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.367 kcal (2) G-P(sol) polarization free energy of solvation -69.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds