Wall clock time and date at job start Mon Mar 30 2020 06:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 120.00188 * 2 1 4 4 H 1.48502 * 109.47162 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47165 * 300.00334 * 3 2 1 6 6 H 1.48504 * 109.46857 * 59.99936 * 3 2 1 7 7 C 1.37878 * 119.99687 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99732 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00295 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47329 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.68349 * 305.32487 * 10 9 7 12 12 S 1.81750 * 109.57468 * 65.64654 * 10 9 7 13 13 C 1.81745 * 102.22036 * 173.07196 * 12 10 9 14 14 C 1.53095 * 108.84536 * 306.73305 * 13 12 10 15 15 C 1.52584 * 109.95230 * 63.02561 * 14 13 12 16 16 C 1.52586 * 110.72624 * 289.32530 * 15 14 13 17 17 H 1.09000 * 109.38891 * 310.52742 * 16 15 14 18 18 N 1.46900 * 109.39005 * 190.82522 * 16 15 14 19 19 C 1.48527 * 110.99985 * 311.52249 * 18 16 15 20 20 C 1.54938 * 103.22809 * 159.72163 * 19 18 16 21 21 C 1.54594 * 102.92106 * 322.58406 * 20 19 18 22 22 C 1.47905 * 110.99719 * 68.91989 * 18 16 15 23 23 H 0.96999 * 119.99891 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.46859 * 60.00635 * 9 7 2 25 25 H 1.09004 * 109.47433 * 300.00731 * 9 7 2 26 26 H 1.09004 * 109.57800 * 186.92506 * 13 12 10 27 27 H 1.09002 * 109.68056 * 66.60790 * 13 12 10 28 28 H 1.09001 * 109.39115 * 302.88283 * 14 13 12 29 29 H 1.08997 * 109.39222 * 183.17044 * 14 13 12 30 30 H 1.09005 * 109.22841 * 169.01000 * 15 14 13 31 31 H 1.09003 * 109.19508 * 49.62761 * 15 14 13 32 32 H 1.08997 * 110.67141 * 278.15401 * 19 18 16 33 33 H 1.09001 * 110.66955 * 41.28586 * 19 18 16 34 34 H 1.09005 * 110.72765 * 204.22884 * 20 19 18 35 35 H 1.08995 * 110.87660 * 81.01298 * 20 19 18 36 36 H 1.08999 * 110.31337 * 263.04447 * 21 20 19 37 37 H 1.09000 * 110.31078 * 140.87030 * 21 20 19 38 38 H 1.08993 * 109.91823 * 333.50869 * 22 18 16 39 39 H 1.08998 * 109.91491 * 94.80335 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7093 1.3463 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9348 -3.5556 -0.8379 12 16 3.1776 -3.6661 1.5595 13 6 4.1210 -5.2149 1.4399 14 6 3.1510 -6.3638 1.1520 15 6 2.4733 -6.1472 -0.1978 16 6 1.4863 -4.9858 -0.1263 17 1 0.8378 -5.1149 0.7402 18 7 0.6684 -4.9650 -1.3464 19 6 1.5188 -5.0746 -2.5592 20 6 0.5263 -5.5601 -3.6454 21 6 -0.3872 -6.5352 -2.8679 22 6 -0.2478 -6.1253 -1.3901 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6246 -2.5571 0.8896 26 1 4.6385 -5.4010 2.3811 27 1 4.8487 -5.1400 0.6318 28 1 2.3937 -6.4028 1.9350 29 1 3.7001 -7.3052 1.1343 30 1 1.9399 -7.0545 -0.4814 31 1 3.2323 -5.9276 -0.9487 32 1 1.9359 -4.1035 -2.8257 33 1 2.3120 -5.8068 -2.4080 34 1 1.0537 -6.0803 -4.4451 35 1 -0.0509 -4.7262 -4.0447 36 1 -0.0510 -7.5625 -3.0088 37 1 -1.4214 -6.4266 -3.1946 38 1 0.1703 -6.9504 -0.8136 39 1 -1.2217 -5.8446 -0.9891 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259784083.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:17 Heat of formation + Delta-G solvation = -7.307539 kcal Electronic energy + Delta-G solvation = -17894.914524 eV Core-core repulsion = 15348.872977 eV Total energy + Delta-G solvation = -2546.041547 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.48917 -35.74590 -33.58096 -31.97291 -30.00638 -28.66145 -27.37685 -25.65214 -22.89164 -21.98405 -20.69487 -20.55937 -19.11351 -16.50492 -16.24569 -15.74240 -15.04416 -14.57348 -14.54485 -14.09562 -13.74653 -13.39632 -13.17829 -12.76342 -12.28029 -12.19782 -11.72512 -11.55845 -11.28115 -11.24437 -11.14355 -10.92570 -10.87828 -10.72276 -10.45589 -10.34250 -10.23554 -9.97835 -9.39650 -9.12853 -8.79934 -8.23088 -7.88091 -6.89104 -5.87705 -3.87664 2.47589 3.31055 3.39600 3.46649 3.52109 4.40379 4.56073 4.77558 4.82942 4.92439 5.00898 5.06614 5.16477 5.37260 5.46220 5.49568 5.60020 5.62240 5.64993 5.83203 5.87673 5.90894 5.93361 5.97637 6.00076 6.13464 6.19186 6.24043 6.31038 6.35503 6.53926 6.84544 7.25654 7.41280 7.82667 7.92161 8.13262 8.51230 9.18047 9.74304 11.23350 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.018238 B = 0.008042 C = 0.006076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.880776 B = 3481.062488 C = 4607.131976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.887 3.113 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.512 4.512 8 H 0.059 0.941 9 C 0.048 3.952 10 C -0.017 4.017 11 H 0.071 0.929 12 S -0.237 6.237 13 C -0.106 4.106 14 C -0.112 4.112 15 C -0.161 4.161 16 C 0.081 3.919 17 H 0.087 0.913 18 N -0.492 5.492 19 C 0.026 3.974 20 C -0.123 4.123 21 C -0.129 4.129 22 C 0.032 3.968 23 H 0.258 0.742 24 H 0.052 0.948 25 H 0.021 0.979 26 H 0.093 0.907 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.046 0.954 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.042 0.958 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.075 -15.295 -3.296 15.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.715 3.285 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.212 1.212 7 C -0.551 4.551 8 H 0.077 0.923 9 C 0.010 3.990 10 C -0.146 4.146 11 H 0.089 0.911 12 S -0.009 6.009 13 C -0.255 4.255 14 C -0.151 4.151 15 C -0.200 4.200 16 C -0.030 4.030 17 H 0.105 0.895 18 N -0.215 5.215 19 C -0.101 4.101 20 C -0.161 4.161 21 C -0.167 4.167 22 C -0.097 4.097 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.039 0.961 26 H 0.112 0.888 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.060 0.940 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.655 -13.908 -2.436 14.367 hybrid contribution 0.983 -0.718 -0.895 1.511 sum 3.639 -14.626 -3.332 15.436 Atomic orbital electron populations 1.69988 1.05913 1.26179 1.51280 1.24951 0.94741 0.98956 0.95603 0.86608 0.80305 0.84188 0.77370 1.19732 1.21256 1.21166 1.21318 0.93192 0.90811 1.49784 0.92303 1.18954 0.92556 0.88592 0.98895 1.23425 0.99275 0.98195 0.93700 0.91052 1.87418 1.55187 1.26703 1.31621 1.23470 1.00163 0.97220 1.04604 1.21626 0.98427 0.97388 0.97682 1.22263 0.99943 0.99862 0.97935 1.22187 0.93569 0.93598 0.93629 0.89469 1.65016 1.16243 1.38984 1.01242 1.23354 0.95193 1.01280 0.90300 1.22464 0.97393 0.99046 0.97189 1.22370 1.00504 0.98649 0.95163 1.22899 0.98290 0.92289 0.96191 0.93281 0.92967 0.96108 0.88827 0.90920 0.90946 0.92031 0.91714 0.91596 0.89593 0.93590 0.91690 0.90601 0.92151 0.91246 0.93995 0.90429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.23 13.29 55.43 0.74 -26.49 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 22.31 29.54 -169.99 -5.02 17.29 16 4 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.51 -14.60 8.55 -34.44 -0.29 -14.89 16 8 H 0.06 1.68 7.63 -52.49 -0.40 1.28 16 9 C 0.05 1.24 4.34 -27.89 -0.12 1.12 16 10 C -0.02 -0.35 1.94 -26.68 -0.05 -0.40 16 11 H 0.07 1.51 7.49 -51.93 -0.39 1.12 16 12 S -0.24 -4.73 21.06 -107.50 -2.26 -6.99 16 13 C -0.11 -1.55 6.45 37.21 0.24 -1.31 16 14 C -0.11 -1.44 5.75 -26.90 -0.15 -1.60 16 15 C -0.16 -2.22 3.77 -27.16 -0.10 -2.32 16 16 C 0.08 1.38 1.48 -67.87 -0.10 1.28 16 17 H 0.09 1.59 8.00 -51.93 -0.42 1.18 16 18 N -0.49 -8.17 4.25 -222.70 -0.95 -9.12 16 19 C 0.03 0.39 5.60 -1.90 -0.01 0.38 16 20 C -0.12 -1.52 7.06 -24.87 -0.18 -1.70 16 21 C -0.13 -1.48 6.93 -25.37 -0.18 -1.66 16 22 C 0.03 0.43 6.40 -2.75 -0.02 0.41 16 23 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 24 H 0.05 1.45 7.37 -51.93 -0.38 1.06 16 25 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.07 0.97 8.06 -51.93 -0.42 0.55 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.81 6.23 -51.93 -0.32 0.49 16 31 H 0.07 0.92 6.52 -51.93 -0.34 0.58 16 32 H 0.09 1.42 7.88 -51.93 -0.41 1.01 16 33 H 0.05 0.62 5.51 -51.93 -0.29 0.34 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.04 0.53 6.06 -51.93 -0.31 0.21 16 39 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 305.53 15.07 4.60 4.60 Total: -1.00 -30.29 305.53 -10.57 -40.86 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -6.62 Total: -1.07 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: -1.06 Total: -19.08 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: -0.21 Total: -35.61 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Atomic # 16 Polarization: -4.73 SS G_CDS: -2.26 Total: -6.99 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.29 -10.57 -40.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259784083.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.557 kcal (2) G-P(sol) polarization free energy of solvation -30.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds