Wall clock time and date at job start Mon Mar 30 2020 06:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 120.00188 * 2 1 4 4 H 1.48502 * 109.47162 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47165 * 300.00334 * 3 2 1 6 6 H 1.48504 * 109.46857 * 59.99936 * 3 2 1 7 7 C 1.37878 * 119.99687 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99732 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00295 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47329 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.68349 * 305.32487 * 10 9 7 12 12 S 1.81750 * 109.57468 * 65.64654 * 10 9 7 13 13 C 1.81745 * 102.22036 * 173.07196 * 12 10 9 14 14 C 1.53095 * 108.84536 * 306.73305 * 13 12 10 15 15 C 1.52584 * 109.95230 * 63.02561 * 14 13 12 16 16 C 1.52586 * 110.72624 * 289.32530 * 15 14 13 17 17 H 1.09000 * 109.38891 * 310.52742 * 16 15 14 18 18 N 1.46900 * 109.39005 * 190.82522 * 16 15 14 19 19 C 1.48527 * 110.99985 * 311.52249 * 18 16 15 20 20 C 1.54938 * 103.22809 * 159.72163 * 19 18 16 21 21 C 1.54594 * 102.92106 * 322.58406 * 20 19 18 22 22 C 1.47905 * 110.99719 * 68.91989 * 18 16 15 23 23 H 0.96999 * 119.99891 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.46859 * 60.00635 * 9 7 2 25 25 H 1.09004 * 109.47433 * 300.00731 * 9 7 2 26 26 H 1.09004 * 109.57800 * 186.92506 * 13 12 10 27 27 H 1.09002 * 109.68056 * 66.60790 * 13 12 10 28 28 H 1.09001 * 109.39115 * 302.88283 * 14 13 12 29 29 H 1.08997 * 109.39222 * 183.17044 * 14 13 12 30 30 H 1.09005 * 109.22841 * 169.01000 * 15 14 13 31 31 H 1.09003 * 109.19508 * 49.62761 * 15 14 13 32 32 H 1.08997 * 110.67141 * 278.15401 * 19 18 16 33 33 H 1.09001 * 110.66955 * 41.28586 * 19 18 16 34 34 H 1.09005 * 110.72765 * 204.22884 * 20 19 18 35 35 H 1.08995 * 110.87660 * 81.01298 * 20 19 18 36 36 H 1.08999 * 110.31337 * 263.04447 * 21 20 19 37 37 H 1.09000 * 110.31078 * 140.87030 * 21 20 19 38 38 H 1.08993 * 109.91823 * 333.50869 * 22 18 16 39 39 H 1.08998 * 109.91491 * 94.80335 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7093 1.3463 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9348 -3.5556 -0.8379 12 16 3.1776 -3.6661 1.5595 13 6 4.1210 -5.2149 1.4399 14 6 3.1510 -6.3638 1.1520 15 6 2.4733 -6.1472 -0.1978 16 6 1.4863 -4.9858 -0.1263 17 1 0.8378 -5.1149 0.7402 18 7 0.6684 -4.9650 -1.3464 19 6 1.5188 -5.0746 -2.5592 20 6 0.5263 -5.5601 -3.6454 21 6 -0.3872 -6.5352 -2.8679 22 6 -0.2478 -6.1253 -1.3901 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6246 -2.5571 0.8896 26 1 4.6385 -5.4010 2.3811 27 1 4.8487 -5.1400 0.6318 28 1 2.3937 -6.4028 1.9350 29 1 3.7001 -7.3052 1.1343 30 1 1.9399 -7.0545 -0.4814 31 1 3.2323 -5.9276 -0.9487 32 1 1.9359 -4.1035 -2.8257 33 1 2.3120 -5.8068 -2.4080 34 1 1.0537 -6.0803 -4.4451 35 1 -0.0509 -4.7262 -4.0447 36 1 -0.0510 -7.5625 -3.0088 37 1 -1.4214 -6.4266 -3.1946 38 1 0.1703 -6.9504 -0.8136 39 1 -1.2217 -5.8446 -0.9891 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259784083.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:16 Heat of formation + Delta-G solvation = -25.200803 kcal Electronic energy + Delta-G solvation = -17895.690434 eV Core-core repulsion = 15348.872977 eV Total energy + Delta-G solvation = -2546.817457 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.70360 -36.94491 -35.49680 -33.58252 -31.61513 -29.76678 -28.65143 -27.43150 -24.56443 -23.21796 -22.15497 -21.70580 -20.42687 -18.39209 -17.87085 -16.95457 -16.53317 -16.32449 -15.81415 -15.46477 -14.86274 -14.81384 -14.70200 -14.12124 -13.82079 -13.49864 -13.29478 -13.00400 -12.97082 -12.53440 -12.49293 -12.38648 -12.18540 -12.04763 -11.92821 -11.78983 -11.71862 -11.27685 -11.25244 -11.18095 -10.57084 -10.31586 -9.10334 -8.49058 -8.13716 -6.21337 1.00223 1.37972 1.39116 1.52214 1.86354 2.43513 3.19241 3.22287 3.59280 3.72852 3.87176 3.90991 4.00135 4.08712 4.19521 4.28726 4.37631 4.49302 4.54314 4.63912 4.71225 4.83746 4.89754 4.92962 4.95528 4.99382 5.01743 5.07946 5.12608 5.21705 5.30656 5.37438 5.55960 5.71343 5.89318 6.10615 6.19542 6.28915 6.92670 7.44762 8.97931 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.018238 B = 0.008042 C = 0.006076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.880776 B = 3481.062488 C = 4607.131976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.956 3.044 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.281 1.281 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.064 3.936 10 C -0.001 4.001 11 H 0.062 0.938 12 S -0.308 6.308 13 C -0.083 4.083 14 C -0.108 4.108 15 C -0.151 4.151 16 C 0.090 3.910 17 H 0.068 0.932 18 N -0.528 5.528 19 C 0.026 3.974 20 C -0.119 4.119 21 C -0.120 4.120 22 C 0.030 3.970 23 H 0.260 0.740 24 H 0.024 0.976 25 H -0.018 1.018 26 H 0.116 0.884 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.058 0.942 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.702 -17.593 -3.839 18.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.195 4.195 3 Si 0.781 3.219 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.207 1.207 7 C -0.563 4.563 8 H 0.073 0.927 9 C 0.026 3.974 10 C -0.130 4.130 11 H 0.080 0.920 12 S -0.081 6.081 13 C -0.231 4.231 14 C -0.147 4.147 15 C -0.189 4.189 16 C -0.021 4.021 17 H 0.086 0.914 18 N -0.252 5.252 19 C -0.101 4.101 20 C -0.157 4.157 21 C -0.158 4.158 22 C -0.098 4.098 23 H 0.069 0.931 24 H 0.042 0.958 25 H 0.000 1.000 26 H 0.134 0.866 27 H 0.102 0.898 28 H 0.086 0.914 29 H 0.119 0.881 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.110 0.890 35 H 0.076 0.924 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.283 -16.215 -2.988 17.036 hybrid contribution 0.487 -0.026 -0.695 0.849 sum 4.771 -16.241 -3.683 17.324 Atomic orbital electron populations 1.70120 1.07529 1.27224 1.52294 1.25840 0.95643 1.02812 0.95242 0.85532 0.79135 0.79556 0.77666 1.18964 1.20266 1.20665 1.21628 0.93130 0.92196 1.49311 0.92712 1.18600 0.92809 0.90405 0.95569 1.23052 0.98150 0.98329 0.93487 0.91988 1.87482 1.56711 1.32401 1.31494 1.23560 0.99605 0.93621 1.06289 1.21628 0.98198 0.98110 0.96800 1.22160 0.99183 0.98828 0.98777 1.21941 0.93834 0.92929 0.93407 0.91385 1.64877 1.17320 1.41418 1.01592 1.23335 0.96072 1.00301 0.90382 1.22453 0.97034 0.98995 0.97235 1.22356 1.00762 0.99652 0.93024 1.22941 0.96982 0.91631 0.98200 0.93091 0.95789 0.99993 0.86563 0.89839 0.91378 0.88058 0.89403 0.91299 0.92671 0.91655 0.88952 0.92355 0.89391 0.90683 0.92300 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.86 13.29 21.45 0.28 -58.58 16 2 C 0.00 0.11 5.46 84.65 0.46 0.58 16 3 Si 0.96 46.78 29.54 68.60 2.03 48.81 16 4 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 5 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 6 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 7 C -0.52 -31.13 8.55 25.60 0.22 -30.91 16 8 H 0.05 3.23 7.63 -2.91 -0.02 3.20 16 9 C 0.06 3.53 4.34 29.85 0.13 3.66 16 10 C 0.00 -0.05 1.94 30.62 0.06 0.00 16 11 H 0.06 2.72 7.49 -2.39 -0.02 2.70 16 12 S -0.31 -12.43 21.06 -56.49 -1.19 -13.62 16 13 C -0.08 -2.18 6.45 72.01 0.46 -1.72 16 14 C -0.11 -2.39 5.75 30.49 0.18 -2.22 16 15 C -0.15 -3.72 3.77 30.32 0.11 -3.61 16 16 C 0.09 3.07 1.48 44.81 0.07 3.14 16 17 H 0.07 2.56 8.00 -2.39 -0.02 2.54 16 18 N -0.53 -17.74 4.25 -858.48 -3.65 -21.40 16 19 C 0.03 0.77 5.60 86.65 0.49 1.25 16 20 C -0.12 -2.77 7.06 31.80 0.22 -2.55 16 21 C -0.12 -2.46 6.93 31.48 0.22 -2.24 16 22 C 0.03 0.79 6.40 86.45 0.55 1.34 16 23 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 24 H 0.02 1.43 7.37 -2.39 -0.02 1.41 16 25 H -0.02 -1.13 8.14 -2.38 -0.02 -1.15 16 26 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 27 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.07 1.62 8.06 -2.39 -0.02 1.60 16 29 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.09 1.82 6.23 -2.38 -0.01 1.80 16 31 H 0.07 1.70 6.52 -2.39 -0.02 1.68 16 32 H 0.05 1.90 7.88 -2.39 -0.02 1.88 16 33 H 0.07 1.62 5.51 -2.39 -0.01 1.60 16 34 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 35 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.06 1.32 6.06 -2.39 -0.01 1.31 16 39 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -69.46 305.53 1.64 -67.81 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 1.00 Total: 10.24 kcal Atomic # 6 Polarization: -36.44 SS G_CDS: 3.17 Total: -33.27 kcal Atomic # 7 Polarization: -76.61 SS G_CDS: -3.37 Total: -79.97 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Atomic # 16 Polarization: -12.43 SS G_CDS: -1.19 Total: -13.62 kcal Total: -69.46 1.64 -67.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259784083.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.611 kcal (2) G-P(sol) polarization free energy of solvation -69.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds