Wall clock time and date at job start Mon Mar 30 2020 06:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00251 * 2 1 4 4 H 1.48497 * 109.47031 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46720 * 299.99623 * 3 2 1 6 6 H 1.48496 * 109.47187 * 59.99448 * 3 2 1 7 7 C 1.37873 * 119.99765 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00067 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00018 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47264 * 179.97438 * 9 7 2 11 11 H 1.09005 * 109.67900 * 53.81855 * 10 9 7 12 12 S 1.81750 * 109.57534 * 293.50374 * 10 9 7 13 13 C 1.81747 * 102.22092 * 293.45449 * 12 10 9 14 14 C 1.53100 * 108.84136 * 306.73738 * 13 12 10 15 15 C 1.52584 * 109.95659 * 63.02131 * 14 13 12 16 16 C 1.52581 * 110.72606 * 289.32504 * 15 14 13 17 17 H 1.08992 * 109.31358 * 310.57517 * 16 15 14 18 18 N 1.46909 * 109.38755 * 190.82336 * 16 15 14 19 19 C 1.48531 * 111.00081 * 59.14568 * 18 16 15 20 20 C 1.54937 * 103.22868 * 159.71988 * 19 18 16 21 21 C 1.54600 * 102.91707 * 322.58610 * 20 19 18 22 22 C 1.47906 * 110.99678 * 176.54378 * 18 16 15 23 23 H 0.97001 * 119.99332 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47267 * 59.99968 * 9 7 2 25 25 H 1.08996 * 109.47463 * 299.99538 * 9 7 2 26 26 H 1.09002 * 109.57234 * 66.53998 * 13 12 10 27 27 H 1.08990 * 109.57798 * 186.79970 * 13 12 10 28 28 H 1.08991 * 109.39163 * 183.17346 * 14 13 12 29 29 H 1.08999 * 109.38803 * 302.97701 * 14 13 12 30 30 H 1.09000 * 109.22763 * 169.00326 * 15 14 13 31 31 H 1.09002 * 109.22368 * 49.64624 * 15 14 13 32 32 H 1.08995 * 110.66578 * 278.15464 * 19 18 16 33 33 H 1.09000 * 110.66523 * 41.28470 * 19 18 16 34 34 H 1.08992 * 110.72203 * 204.22985 * 20 19 18 35 35 H 1.08992 * 110.87809 * 81.01347 * 20 19 18 36 36 H 1.09000 * 110.31016 * 263.03865 * 21 20 19 37 37 H 1.09004 * 110.39299 * 140.91849 * 21 20 19 38 38 H 1.09003 * 109.91543 * 333.50275 * 22 18 16 39 39 H 1.09000 * 109.91878 * 94.60745 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9442 -3.5474 0.8290 12 16 3.1599 -3.6812 -1.5698 13 6 1.8567 -4.0886 -2.7694 14 6 1.1430 -5.3629 -2.3104 15 6 0.4571 -5.1213 -0.9690 16 6 1.4878 -4.9845 0.1477 17 1 2.1930 -5.8136 0.0909 18 7 0.8048 -5.0133 1.4480 19 6 0.0499 -6.2802 1.6248 20 6 -0.1373 -6.3700 3.1602 21 6 1.2002 -5.8177 3.7044 22 6 1.7793 -4.9660 2.5597 23 1 -0.4849 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 1.1408 -3.2683 -2.8233 27 1 2.3015 -4.2503 -3.7511 28 1 0.3969 -5.6470 -3.0524 29 1 1.8712 -6.1668 -2.2031 30 1 -0.2032 -5.9597 -0.7473 31 1 -0.1327 -4.2065 -1.0271 32 1 -0.9156 -6.2260 1.1221 33 1 0.6291 -7.1275 1.2577 34 1 -0.2826 -7.4044 3.4712 35 1 -0.9720 -5.7497 3.4867 36 1 1.8773 -6.6370 3.9463 37 1 1.0257 -5.1995 4.5850 38 1 2.7337 -5.3803 2.2347 39 1 1.9150 -3.9364 2.8909 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259784087.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:18 Heat of formation + Delta-G solvation = -9.246355 kcal Electronic energy + Delta-G solvation = -17998.250817 eV Core-core repulsion = 15452.125197 eV Total energy + Delta-G solvation = -2546.125620 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.24244 -36.08123 -33.19836 -31.97785 -30.03690 -28.71593 -27.29926 -25.42409 -22.81124 -21.86857 -21.18026 -20.26183 -18.77206 -16.52411 -16.37577 -15.70439 -15.05496 -14.52147 -14.39174 -14.00153 -13.71521 -13.05510 -12.88993 -12.63872 -12.40676 -12.14532 -11.89626 -11.55986 -11.37599 -11.13205 -11.07067 -10.94108 -10.77044 -10.60764 -10.45044 -10.40636 -10.38336 -9.71569 -9.39533 -9.12765 -8.71821 -8.22341 -7.95595 -6.77163 -5.88437 -3.86899 2.60613 3.28542 3.38464 3.45915 3.51735 4.33686 4.56326 4.81610 4.86608 5.05392 5.14917 5.27688 5.35780 5.43809 5.48481 5.52021 5.65260 5.71730 5.84051 5.84287 5.91554 5.94235 6.05908 6.07553 6.16987 6.24183 6.29713 6.32856 6.37287 6.46934 6.64184 6.84665 7.23768 7.44139 7.75579 7.88069 8.11126 8.52721 9.17412 9.74302 11.22860 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.018111 B = 0.008199 C = 0.006506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.659008 B = 3414.292864 C = 4302.565574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.886 3.114 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.287 1.287 7 C -0.502 4.502 8 H 0.057 0.943 9 C 0.038 3.962 10 C -0.025 4.025 11 H 0.093 0.907 12 S -0.274 6.274 13 C -0.081 4.081 14 C -0.113 4.113 15 C -0.128 4.128 16 C 0.088 3.912 17 H 0.038 0.962 18 N -0.498 5.498 19 C 0.035 3.965 20 C -0.122 4.122 21 C -0.130 4.130 22 C 0.036 3.964 23 H 0.257 0.743 24 H 0.019 0.981 25 H 0.042 0.958 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.038 0.962 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.040 0.960 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.446 -13.984 1.534 14.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.144 4.144 3 Si 0.715 3.285 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.213 1.213 7 C -0.541 4.541 8 H 0.076 0.924 9 C 0.000 4.000 10 C -0.154 4.154 11 H 0.111 0.889 12 S -0.047 6.047 13 C -0.229 4.229 14 C -0.152 4.152 15 C -0.166 4.166 16 C -0.022 4.022 17 H 0.055 0.945 18 N -0.223 5.223 19 C -0.093 4.093 20 C -0.160 4.160 21 C -0.168 4.168 22 C -0.092 4.092 23 H 0.066 0.934 24 H 0.037 0.963 25 H 0.060 0.940 26 H 0.107 0.893 27 H 0.110 0.890 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.056 0.944 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.058 0.942 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.088 -13.199 1.334 13.311 hybrid contribution -0.216 0.166 0.114 0.296 sum 0.871 -13.033 1.449 13.143 Atomic orbital electron populations 1.69984 1.05883 1.26094 1.51846 1.24931 0.94733 0.98885 0.95819 0.86613 0.80323 0.84244 0.77321 1.19760 1.21233 1.21330 1.21267 0.93113 0.90634 1.49075 0.92450 1.19275 0.92884 0.89498 0.98359 1.23424 1.00231 0.97917 0.93804 0.88940 1.86315 1.18964 1.93558 1.05826 1.23308 0.99913 1.00350 0.99316 1.21678 0.99464 0.97019 0.97071 1.21652 0.98244 1.03510 0.93148 1.22039 0.94336 0.96654 0.89184 0.94464 1.64780 1.23170 1.32981 1.01365 1.23217 0.98989 0.91099 0.96041 1.22452 0.98057 1.00434 0.95085 1.22389 0.96753 0.99053 0.98581 1.22852 0.93944 1.01159 0.91220 0.93370 0.96300 0.93957 0.89276 0.89044 0.91467 0.91684 0.92003 0.89409 0.90198 0.94387 0.91643 0.90700 0.92059 0.91119 0.94201 0.89677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 4 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.50 -14.14 8.57 -34.44 -0.30 -14.44 16 8 H 0.06 1.63 7.67 -52.49 -0.40 1.23 16 9 C 0.04 0.95 3.75 -27.88 -0.10 0.85 16 10 C -0.03 -0.52 2.18 -26.68 -0.06 -0.58 16 11 H 0.09 1.99 7.13 -51.93 -0.37 1.62 16 12 S -0.27 -5.50 21.17 -107.50 -2.28 -7.77 16 13 C -0.08 -1.37 6.06 37.21 0.23 -1.14 16 14 C -0.11 -1.64 5.75 -26.89 -0.15 -1.80 16 15 C -0.13 -2.08 4.83 -27.16 -0.13 -2.21 16 16 C 0.09 1.53 1.18 -67.87 -0.08 1.45 16 17 H 0.04 0.63 7.89 -51.93 -0.41 0.22 16 18 N -0.50 -8.30 4.40 -222.70 -0.98 -9.27 16 19 C 0.03 0.47 5.38 -1.90 -0.01 0.46 16 20 C -0.12 -1.43 7.06 -24.87 -0.18 -1.61 16 21 C -0.13 -1.58 6.93 -25.37 -0.18 -1.76 16 22 C 0.04 0.55 5.43 -2.75 -0.01 0.54 16 23 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 24 H 0.02 0.51 5.28 -51.93 -0.27 0.23 16 25 H 0.04 1.16 7.55 -51.93 -0.39 0.77 16 26 H 0.09 1.70 7.27 -51.93 -0.38 1.32 16 27 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.90 8.05 -51.93 -0.42 0.48 16 30 H 0.06 0.88 6.34 -51.93 -0.33 0.55 16 31 H 0.09 1.69 5.97 -51.93 -0.31 1.38 16 32 H 0.08 1.05 7.39 -51.93 -0.38 0.67 16 33 H 0.04 0.48 8.00 -51.93 -0.42 0.07 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.04 0.60 7.63 -51.93 -0.40 0.20 16 39 H 0.08 1.46 8.12 -51.93 -0.42 1.03 16 LS Contribution 303.73 15.07 4.58 4.58 Total: -1.00 -29.98 303.73 -10.61 -40.59 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -6.57 Total: -0.34 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: -1.07 Total: -18.71 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: -0.24 Total: -35.54 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 16 Polarization: -5.50 SS G_CDS: -2.28 Total: -7.77 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.98 -10.61 -40.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259784087.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.342 kcal (2) G-P(sol) polarization free energy of solvation -29.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds