Wall clock time and date at job start Mon Mar 30 2020 06:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00251 * 2 1 4 4 H 1.48497 * 109.47031 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46720 * 299.99623 * 3 2 1 6 6 H 1.48496 * 109.47187 * 59.99448 * 3 2 1 7 7 C 1.37873 * 119.99765 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00067 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00018 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47264 * 179.97438 * 9 7 2 11 11 H 1.09005 * 109.67900 * 53.81855 * 10 9 7 12 12 S 1.81750 * 109.57534 * 293.50374 * 10 9 7 13 13 C 1.81747 * 102.22092 * 293.45449 * 12 10 9 14 14 C 1.53100 * 108.84136 * 306.73738 * 13 12 10 15 15 C 1.52584 * 109.95659 * 63.02131 * 14 13 12 16 16 C 1.52581 * 110.72606 * 289.32504 * 15 14 13 17 17 H 1.08992 * 109.31358 * 310.57517 * 16 15 14 18 18 N 1.46909 * 109.38755 * 190.82336 * 16 15 14 19 19 C 1.48531 * 111.00081 * 59.14568 * 18 16 15 20 20 C 1.54937 * 103.22868 * 159.71988 * 19 18 16 21 21 C 1.54600 * 102.91707 * 322.58610 * 20 19 18 22 22 C 1.47906 * 110.99678 * 176.54378 * 18 16 15 23 23 H 0.97001 * 119.99332 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47267 * 59.99968 * 9 7 2 25 25 H 1.08996 * 109.47463 * 299.99538 * 9 7 2 26 26 H 1.09002 * 109.57234 * 66.53998 * 13 12 10 27 27 H 1.08990 * 109.57798 * 186.79970 * 13 12 10 28 28 H 1.08991 * 109.39163 * 183.17346 * 14 13 12 29 29 H 1.08999 * 109.38803 * 302.97701 * 14 13 12 30 30 H 1.09000 * 109.22763 * 169.00326 * 15 14 13 31 31 H 1.09002 * 109.22368 * 49.64624 * 15 14 13 32 32 H 1.08995 * 110.66578 * 278.15464 * 19 18 16 33 33 H 1.09000 * 110.66523 * 41.28470 * 19 18 16 34 34 H 1.08992 * 110.72203 * 204.22985 * 20 19 18 35 35 H 1.08992 * 110.87809 * 81.01347 * 20 19 18 36 36 H 1.09000 * 110.31016 * 263.03865 * 21 20 19 37 37 H 1.09004 * 110.39299 * 140.91849 * 21 20 19 38 38 H 1.09003 * 109.91543 * 333.50275 * 22 18 16 39 39 H 1.09000 * 109.91878 * 94.60745 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9442 -3.5474 0.8290 12 16 3.1599 -3.6812 -1.5698 13 6 1.8567 -4.0886 -2.7694 14 6 1.1430 -5.3629 -2.3104 15 6 0.4571 -5.1213 -0.9690 16 6 1.4878 -4.9845 0.1477 17 1 2.1930 -5.8136 0.0909 18 7 0.8048 -5.0133 1.4480 19 6 0.0499 -6.2802 1.6248 20 6 -0.1373 -6.3700 3.1602 21 6 1.2002 -5.8177 3.7044 22 6 1.7793 -4.9660 2.5597 23 1 -0.4849 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 1.1408 -3.2683 -2.8233 27 1 2.3015 -4.2503 -3.7511 28 1 0.3969 -5.6470 -3.0524 29 1 1.8712 -6.1668 -2.2031 30 1 -0.2032 -5.9597 -0.7473 31 1 -0.1327 -4.2065 -1.0271 32 1 -0.9156 -6.2260 1.1221 33 1 0.6291 -7.1275 1.2577 34 1 -0.2826 -7.4044 3.4712 35 1 -0.9720 -5.7497 3.4867 36 1 1.8773 -6.6370 3.9463 37 1 1.0257 -5.1995 4.5850 38 1 2.7337 -5.3803 2.2347 39 1 1.9150 -3.9364 2.8909 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259784087.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:18 Heat of formation + Delta-G solvation = -26.690205 kcal Electronic energy + Delta-G solvation = -17999.007239 eV Core-core repulsion = 15452.125197 eV Total energy + Delta-G solvation = -2546.882042 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.50511 -37.39015 -35.18434 -33.47505 -31.67874 -29.86837 -28.73236 -27.19236 -24.49915 -23.40395 -22.36874 -21.35668 -20.25366 -18.54076 -17.90349 -16.83577 -16.53630 -16.42431 -15.90344 -15.42424 -14.95038 -14.46701 -14.35367 -14.12195 -13.86540 -13.60847 -13.48831 -13.09346 -12.89645 -12.76878 -12.48027 -12.33906 -12.24217 -12.15653 -11.90943 -11.78951 -11.44555 -11.39942 -11.15467 -11.14710 -10.51747 -10.32715 -9.21519 -8.40747 -8.12692 -6.18035 1.06254 1.37627 1.38741 1.51650 1.74774 2.44098 3.11940 3.21649 3.66474 3.76632 3.82330 3.98984 4.05491 4.10412 4.20154 4.32887 4.38755 4.48221 4.61515 4.69709 4.70874 4.79950 4.90408 4.93147 4.99360 5.02065 5.04980 5.06758 5.09587 5.21843 5.35973 5.37579 5.58555 5.73038 5.89630 6.06716 6.19283 6.33227 6.94263 7.46791 8.98683 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.018111 B = 0.008199 C = 0.006506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.659008 B = 3414.292864 C = 4302.565574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.951 3.049 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.516 4.516 8 H 0.050 0.950 9 C 0.058 3.942 10 C -0.017 4.017 11 H 0.077 0.923 12 S -0.304 6.304 13 C -0.072 4.072 14 C -0.105 4.105 15 C -0.124 4.124 16 C 0.098 3.902 17 H 0.050 0.950 18 N -0.528 5.528 19 C 0.034 3.966 20 C -0.116 4.116 21 C -0.123 4.123 22 C 0.034 3.966 23 H 0.259 0.741 24 H -0.002 1.002 25 H 0.010 0.990 26 H 0.060 0.940 27 H 0.119 0.881 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.054 0.946 34 H 0.095 0.905 35 H 0.065 0.935 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.041 0.959 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.734 -15.844 1.218 15.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.193 4.193 3 Si 0.777 3.223 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.555 4.555 8 H 0.068 0.932 9 C 0.020 3.980 10 C -0.146 4.146 11 H 0.095 0.905 12 S -0.076 6.076 13 C -0.220 4.220 14 C -0.144 4.144 15 C -0.162 4.162 16 C -0.013 4.013 17 H 0.068 0.932 18 N -0.253 5.253 19 C -0.093 4.093 20 C -0.154 4.154 21 C -0.161 4.161 22 C -0.094 4.094 23 H 0.068 0.932 24 H 0.016 0.984 25 H 0.028 0.972 26 H 0.079 0.921 27 H 0.138 0.862 28 H 0.116 0.884 29 H 0.102 0.898 30 H 0.106 0.894 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.114 0.886 35 H 0.084 0.916 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.060 0.940 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.378 -15.069 1.022 15.166 hybrid contribution -0.324 0.766 0.193 0.854 sum 1.054 -14.303 1.215 14.393 Atomic orbital electron populations 1.70103 1.07320 1.27054 1.52725 1.25741 0.95593 1.02450 0.95516 0.85600 0.79103 0.79977 0.77609 1.19280 1.20556 1.20571 1.21586 0.92937 0.92245 1.48710 0.93216 1.18932 0.92879 0.90518 0.95688 1.23172 0.99103 0.98371 0.93935 0.90516 1.86305 1.20749 1.93995 1.06587 1.23418 0.98320 1.00747 0.99505 1.21664 1.00238 0.95895 0.96605 1.21625 0.98019 1.02637 0.93916 1.21884 0.94584 0.94521 0.90262 0.93202 1.64703 1.23801 1.35579 1.01229 1.23298 0.98631 0.89934 0.97444 1.22458 0.97246 1.02027 0.93716 1.22372 0.97383 0.99180 0.97193 1.22813 0.94283 1.00046 0.92242 0.93200 0.98408 0.97161 0.92087 0.86241 0.88416 0.89839 0.89418 0.93171 0.90103 0.92764 0.88607 0.91598 0.89791 0.90975 0.94020 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.55 13.29 21.45 0.28 -57.26 16 2 C 0.00 0.24 5.46 84.65 0.46 0.70 16 3 Si 0.95 46.37 29.54 68.60 2.03 48.39 16 4 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 5 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 6 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 7 C -0.52 -30.10 8.57 25.60 0.22 -29.88 16 8 H 0.05 2.92 7.67 -2.91 -0.02 2.89 16 9 C 0.06 3.06 3.75 29.85 0.11 3.18 16 10 C -0.02 -0.72 2.18 30.63 0.07 -0.66 16 11 H 0.08 3.46 7.13 -2.39 -0.02 3.45 16 12 S -0.30 -12.19 21.17 -56.49 -1.20 -13.38 16 13 C -0.07 -2.36 6.06 72.02 0.44 -1.93 16 14 C -0.10 -2.78 5.75 30.49 0.18 -2.61 16 15 C -0.12 -3.90 4.83 30.32 0.15 -3.76 16 16 C 0.10 3.35 1.18 44.81 0.05 3.40 16 17 H 0.05 1.60 7.89 -2.39 -0.02 1.58 16 18 N -0.53 -17.55 4.40 -858.48 -3.78 -21.32 16 19 C 0.03 0.85 5.38 86.65 0.47 1.32 16 20 C -0.12 -2.46 7.06 31.80 0.22 -2.24 16 21 C -0.12 -2.81 6.93 31.47 0.22 -2.59 16 22 C 0.03 1.06 5.43 86.44 0.47 1.52 16 23 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 24 H 0.00 -0.13 5.28 -2.39 -0.01 -0.14 16 25 H 0.01 0.60 7.55 -2.39 -0.02 0.58 16 26 H 0.06 2.36 7.27 -2.39 -0.02 2.34 16 27 H 0.12 3.24 8.14 -2.39 -0.02 3.22 16 28 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.08 1.99 8.05 -2.39 -0.02 1.97 16 30 H 0.09 2.29 6.34 -2.39 -0.02 2.27 16 31 H 0.05 1.97 5.97 -2.39 -0.01 1.96 16 32 H 0.08 1.97 7.39 -2.39 -0.02 1.96 16 33 H 0.05 1.19 8.00 -2.39 -0.02 1.17 16 34 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.04 1.24 7.63 -2.39 -0.02 1.22 16 39 H 0.05 1.91 8.12 -2.39 -0.02 1.89 16 Total: -1.00 -66.86 303.73 1.39 -65.47 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 1.00 Total: 11.65 kcal Atomic # 6 Polarization: -36.59 SS G_CDS: 3.05 Total: -33.54 kcal Atomic # 7 Polarization: -75.10 SS G_CDS: -3.49 Total: -78.59 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.39 kcal Atomic # 16 Polarization: -12.19 SS G_CDS: -1.20 Total: -13.38 kcal Total: -66.86 1.39 -65.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259784087.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.778 kcal (2) G-P(sol) polarization free energy of solvation -66.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds