Wall clock time and date at job start Mon Mar 30 2020 06:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47618 * 2 1 4 4 C 1.53150 * 109.47682 * 239.99544 * 2 1 3 5 5 C 1.52509 * 109.31760 * 298.19653 * 4 2 1 6 6 C 1.53203 * 110.68105 * 66.85524 * 5 4 2 7 7 C 1.53086 * 112.34679 * 121.36657 * 6 5 4 8 8 H 1.08998 * 109.60016 * 89.75908 * 7 6 5 9 9 C 1.50693 * 109.60201 * 210.07457 * 7 6 5 10 10 H 1.08000 * 120.00010 * 0.66460 * 9 7 6 11 11 C 1.37872 * 120.00038 * 180.37780 * 9 7 6 12 12 N 1.31510 * 120.00375 * 0.02562 * 11 9 7 13 13 Si 1.86809 * 119.99981 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47020 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47072 * 120.00601 * 13 11 9 16 16 H 1.48499 * 109.47180 * 240.00289 * 13 11 9 17 17 C 1.55203 * 108.81950 * 329.91981 * 7 6 5 18 18 S 1.83023 * 109.69468 * 182.68752 * 5 4 2 19 19 C 1.52496 * 110.60090 * 303.81997 * 5 4 2 20 20 C 1.53150 * 109.32245 * 56.17722 * 19 5 4 21 21 H 1.09003 * 109.47151 * 61.80962 * 20 19 5 22 22 C 1.52999 * 109.47274 * 181.80636 * 20 19 5 23 23 N 1.46852 * 109.46008 * 301.80747 * 20 19 5 24 24 H 1.08997 * 109.47177 * 190.57670 * 1 2 3 25 25 H 1.08992 * 109.47359 * 310.58216 * 1 2 3 26 26 H 1.09003 * 109.47086 * 70.58171 * 1 2 3 27 27 H 1.08991 * 109.49906 * 178.24402 * 4 2 1 28 28 H 1.08997 * 109.49971 * 58.14656 * 4 2 1 29 29 H 1.09000 * 108.91258 * 0.60854 * 6 5 4 30 30 H 1.08996 * 108.91394 * 242.12456 * 6 5 4 31 31 H 0.96996 * 120.00710 * 180.02562 * 12 11 9 32 32 H 1.09002 * 111.12244 * 159.23288 * 17 7 6 33 33 H 1.08997 * 111.12438 * 283.39613 * 17 7 6 34 34 H 1.08997 * 109.49765 * 176.13540 * 19 5 4 35 35 H 1.09005 * 109.49601 * 296.22785 * 19 5 4 36 36 H 1.08996 * 109.47203 * 179.97438 * 22 20 19 37 37 H 1.08989 * 109.47571 * 299.99431 * 22 20 19 38 38 H 1.09006 * 109.46822 * 59.99325 * 22 20 19 39 39 H 1.00890 * 111.00086 * 298.03452 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0406 -0.7220 -1.2504 5 6 1.5677 -2.1717 -1.2243 6 6 0.0446 -2.2467 -1.3711 7 6 -0.3830 -3.0707 -2.5883 8 1 -0.4950 -4.1162 -2.3011 9 6 -1.6939 -2.5485 -3.1171 10 1 -2.1708 -1.7048 -2.6406 11 6 -2.2816 -3.1442 -4.2129 12 7 -1.6984 -4.1684 -4.7964 13 14 -3.9064 -2.4964 -4.8688 14 1 -4.3505 -1.3456 -4.0420 15 1 -3.7317 -2.0560 -6.2762 16 1 -4.9282 -3.5723 -4.8101 17 6 0.7077 -2.9462 -3.6854 18 16 2.2389 -3.0656 -2.6736 19 6 2.0197 -2.8605 0.0590 20 6 1.5098 -2.0679 1.2662 21 1 0.4200 -2.0525 1.2567 22 6 1.9992 -2.7310 2.5552 23 7 2.0196 -0.6924 1.1990 24 1 -0.3633 -1.0102 0.1886 25 1 -0.3634 0.6685 0.7804 26 1 -0.3633 0.3417 -0.9692 27 1 3.1301 -0.6951 -1.2666 28 1 1.6507 -0.2282 -2.1404 29 1 -0.3508 -1.2360 -1.4719 30 1 -0.3751 -2.6994 -0.4728 31 1 -2.1117 -4.5872 -5.5675 32 1 0.6448 -3.7693 -4.3972 33 1 0.6455 -1.9840 -4.1938 34 1 1.6151 -3.8721 0.0907 35 1 3.1086 -2.9028 0.0851 36 1 1.6368 -2.1666 3.4144 37 1 1.6209 -3.7519 2.6050 38 1 3.0891 -2.7465 2.5646 39 1 3.0276 -0.6780 1.2385 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259785928.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:12 Heat of formation + Delta-G solvation = -4.848774 kcal Electronic energy + Delta-G solvation = -18268.524916 eV Core-core repulsion = 15722.589989 eV Total energy + Delta-G solvation = -2545.934927 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.96660 -35.26274 -33.14075 -32.46623 -30.38036 -28.35704 -26.85163 -25.40305 -25.19430 -21.84652 -21.43066 -19.67872 -18.51192 -16.62562 -16.09085 -15.29802 -14.88832 -14.37990 -14.27708 -14.06299 -13.74568 -13.34824 -12.83384 -12.48211 -12.24176 -12.00765 -11.95966 -11.70195 -11.51544 -11.17451 -11.03778 -10.88655 -10.70056 -10.58879 -10.44337 -10.33107 -10.29703 -9.81095 -9.45502 -9.11759 -8.77925 -8.47357 -8.09474 -6.92270 -6.15344 -4.21587 2.72589 3.20774 3.30359 3.33415 3.41746 4.31342 4.33456 4.89698 4.93107 5.16066 5.17316 5.34116 5.40928 5.47660 5.57114 5.67144 5.73728 5.82246 5.89275 6.04689 6.08370 6.17337 6.20702 6.22599 6.29770 6.38947 6.48869 6.50880 6.58922 6.75978 6.77443 6.90989 7.21430 7.40205 7.52521 7.64405 7.83200 8.20206 8.81235 9.44088 10.92304 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.026974 B = 0.007107 C = 0.006475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.793575 B = 3939.068344 C = 4323.518037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.088 3.912 3 H 0.079 0.921 4 C -0.128 4.128 5 C 0.009 3.991 6 C -0.129 4.129 7 C 0.047 3.953 8 H 0.037 0.963 9 C -0.514 4.514 10 H 0.060 0.940 11 C 0.064 3.936 12 N -0.888 5.888 13 Si 0.893 3.107 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.283 1.283 17 C -0.013 4.013 18 S -0.384 6.384 19 C -0.123 4.123 20 C 0.079 3.921 21 H 0.090 0.910 22 C -0.142 4.142 23 N -0.676 5.676 24 H 0.081 0.919 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.058 0.942 31 H 0.263 0.737 32 H 0.107 0.893 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.050 0.950 39 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.042 5.439 9.799 12.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.024 4.024 3 H 0.098 0.902 4 C -0.170 4.170 5 C -0.101 4.101 6 C -0.167 4.167 7 C 0.026 3.974 8 H 0.056 0.944 9 C -0.553 4.553 10 H 0.078 0.922 11 C -0.139 4.139 12 N -0.525 5.525 13 Si 0.721 3.279 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.209 1.209 17 C -0.161 4.161 18 S -0.153 6.153 19 C -0.164 4.164 20 C -0.033 4.033 21 H 0.108 0.892 22 C -0.199 4.199 23 N -0.305 5.305 24 H 0.099 0.901 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.125 0.875 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.646 5.022 9.778 12.845 hybrid contribution -1.277 0.218 -1.213 1.775 sum 5.370 5.240 8.564 11.386 Atomic orbital electron populations 1.22479 0.94401 1.03670 1.01363 1.21589 0.96254 0.97039 0.87492 0.90246 1.22413 1.00400 0.94568 0.99576 1.22670 0.98543 0.95234 0.93636 1.22851 0.90396 1.03411 1.00040 1.19561 0.93171 0.96410 0.88210 0.94437 1.21160 1.04761 1.15831 1.13568 0.92160 1.25015 0.97597 0.94678 0.96603 1.69919 1.38982 1.21897 1.21728 0.86504 0.83580 0.78966 0.78835 1.19635 1.20931 1.20893 1.24672 0.87309 1.04173 0.99911 1.87311 1.30557 1.76741 1.20644 1.22203 1.00590 1.00145 0.93430 1.21745 1.00878 0.87190 0.93450 0.89187 1.21775 1.00885 1.00197 0.97091 1.60732 1.14421 1.15885 1.39503 0.90052 0.93103 0.91584 0.92055 0.90849 0.89483 0.92382 0.92739 0.87456 0.91531 0.90691 0.92220 0.92020 0.92164 0.93049 0.84693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 7.48 37.16 0.28 -2.00 16 2 C 0.09 1.17 3.69 -67.66 -0.25 0.92 16 3 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 4 C -0.13 -1.97 4.50 -26.91 -0.12 -2.10 16 5 C 0.01 0.15 0.79 -91.02 -0.07 0.08 16 6 C -0.13 -2.52 3.26 -26.58 -0.09 -2.61 16 7 C 0.05 1.12 2.46 -90.56 -0.22 0.90 16 8 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 9 C -0.51 -13.33 8.43 -34.45 -0.29 -13.62 16 10 H 0.06 1.53 7.53 -52.49 -0.40 1.14 16 11 C 0.06 1.69 5.31 -17.82 -0.09 1.60 16 12 N -0.89 -24.56 11.82 55.43 0.66 -23.91 16 13 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 14 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 C -0.01 -0.31 6.18 38.32 0.24 -0.07 16 18 S -0.38 -7.98 22.00 -107.50 -2.37 -10.35 16 19 C -0.12 -1.88 4.00 -26.91 -0.11 -1.98 16 20 C 0.08 1.03 2.65 -67.66 -0.18 0.85 16 21 H 0.09 1.28 5.09 -51.93 -0.26 1.02 16 22 C -0.14 -1.55 9.47 37.16 0.35 -1.19 16 23 N -0.68 -8.41 6.30 -99.64 -0.63 -9.04 16 24 H 0.08 1.24 3.10 -51.93 -0.16 1.08 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.97 7.00 -51.93 -0.36 0.61 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.09 1.67 3.66 -51.93 -0.19 1.48 16 30 H 0.06 1.10 6.06 -51.93 -0.31 0.79 16 31 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.11 2.78 7.12 -51.93 -0.37 2.41 16 33 H 0.07 1.59 8.10 -51.93 -0.42 1.17 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.63 8.14 -51.94 -0.42 0.21 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.34 3.83 8.79 -39.30 -0.35 3.48 16 LS Contribution 295.38 15.07 4.45 4.45 Total: -1.00 -26.65 295.38 -9.65 -36.30 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -6.19 Total: 6.30 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: -0.56 Total: -19.23 kcal Atomic # 7 Polarization: -32.98 SS G_CDS: 0.03 Total: -32.95 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: -7.98 SS G_CDS: -2.37 Total: -10.35 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -26.65 -9.65 -36.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259785928.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.448 kcal (2) G-P(sol) polarization free energy of solvation -26.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds