Wall clock time and date at job start Mon Mar 30 2020 06:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47618 * 2 1 4 4 C 1.53150 * 109.47682 * 239.99544 * 2 1 3 5 5 C 1.52509 * 109.31760 * 298.19653 * 4 2 1 6 6 C 1.53203 * 110.68105 * 66.85524 * 5 4 2 7 7 C 1.53086 * 112.34679 * 121.36657 * 6 5 4 8 8 H 1.08998 * 109.60016 * 89.75908 * 7 6 5 9 9 C 1.50693 * 109.60201 * 210.07457 * 7 6 5 10 10 H 1.08000 * 120.00010 * 0.66460 * 9 7 6 11 11 C 1.37872 * 120.00038 * 180.37780 * 9 7 6 12 12 N 1.31510 * 120.00375 * 0.02562 * 11 9 7 13 13 Si 1.86809 * 119.99981 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47020 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47072 * 120.00601 * 13 11 9 16 16 H 1.48499 * 109.47180 * 240.00289 * 13 11 9 17 17 C 1.55203 * 108.81950 * 329.91981 * 7 6 5 18 18 S 1.83023 * 109.69468 * 182.68752 * 5 4 2 19 19 C 1.52496 * 110.60090 * 303.81997 * 5 4 2 20 20 C 1.53150 * 109.32245 * 56.17722 * 19 5 4 21 21 H 1.09003 * 109.47151 * 61.80962 * 20 19 5 22 22 C 1.52999 * 109.47274 * 181.80636 * 20 19 5 23 23 N 1.46852 * 109.46008 * 301.80747 * 20 19 5 24 24 H 1.08997 * 109.47177 * 190.57670 * 1 2 3 25 25 H 1.08992 * 109.47359 * 310.58216 * 1 2 3 26 26 H 1.09003 * 109.47086 * 70.58171 * 1 2 3 27 27 H 1.08991 * 109.49906 * 178.24402 * 4 2 1 28 28 H 1.08997 * 109.49971 * 58.14656 * 4 2 1 29 29 H 1.09000 * 108.91258 * 0.60854 * 6 5 4 30 30 H 1.08996 * 108.91394 * 242.12456 * 6 5 4 31 31 H 0.96996 * 120.00710 * 180.02562 * 12 11 9 32 32 H 1.09002 * 111.12244 * 159.23288 * 17 7 6 33 33 H 1.08997 * 111.12438 * 283.39613 * 17 7 6 34 34 H 1.08997 * 109.49765 * 176.13540 * 19 5 4 35 35 H 1.09005 * 109.49601 * 296.22785 * 19 5 4 36 36 H 1.08996 * 109.47203 * 179.97438 * 22 20 19 37 37 H 1.08989 * 109.47571 * 299.99431 * 22 20 19 38 38 H 1.09006 * 109.46822 * 59.99325 * 22 20 19 39 39 H 1.00890 * 111.00086 * 298.03452 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0406 -0.7220 -1.2504 5 6 1.5677 -2.1717 -1.2243 6 6 0.0446 -2.2467 -1.3711 7 6 -0.3830 -3.0707 -2.5883 8 1 -0.4950 -4.1162 -2.3011 9 6 -1.6939 -2.5485 -3.1171 10 1 -2.1708 -1.7048 -2.6406 11 6 -2.2816 -3.1442 -4.2129 12 7 -1.6984 -4.1684 -4.7964 13 14 -3.9064 -2.4964 -4.8688 14 1 -4.3505 -1.3456 -4.0420 15 1 -3.7317 -2.0560 -6.2762 16 1 -4.9282 -3.5723 -4.8101 17 6 0.7077 -2.9462 -3.6854 18 16 2.2389 -3.0656 -2.6736 19 6 2.0197 -2.8605 0.0590 20 6 1.5098 -2.0679 1.2662 21 1 0.4200 -2.0525 1.2567 22 6 1.9992 -2.7310 2.5552 23 7 2.0196 -0.6924 1.1990 24 1 -0.3633 -1.0102 0.1886 25 1 -0.3634 0.6685 0.7804 26 1 -0.3633 0.3417 -0.9692 27 1 3.1301 -0.6951 -1.2666 28 1 1.6507 -0.2282 -2.1404 29 1 -0.3508 -1.2360 -1.4719 30 1 -0.3751 -2.6994 -0.4728 31 1 -2.1117 -4.5872 -5.5675 32 1 0.6448 -3.7693 -4.3972 33 1 0.6455 -1.9840 -4.1938 34 1 1.6151 -3.8721 0.0907 35 1 3.1086 -2.9028 0.0851 36 1 1.6368 -2.1666 3.4144 37 1 1.6209 -3.7519 2.6050 38 1 3.0891 -2.7465 2.5646 39 1 3.0276 -0.6780 1.2385 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259785928.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:12 Heat of formation + Delta-G solvation = -19.859438 kcal Electronic energy + Delta-G solvation = -18269.175828 eV Core-core repulsion = 15722.589989 eV Total energy + Delta-G solvation = -2546.585838 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.21557 -36.96781 -34.48589 -33.94504 -32.05913 -29.47674 -28.08181 -27.35953 -26.72153 -23.29015 -22.64338 -21.19119 -19.86731 -18.48334 -17.67851 -16.54608 -16.45927 -15.98976 -15.76624 -15.35030 -15.08672 -14.75118 -14.41150 -13.98586 -13.62808 -13.41824 -13.14313 -12.96059 -12.91929 -12.88218 -12.63609 -12.42261 -12.24188 -12.09106 -11.88737 -11.68747 -11.61276 -11.41627 -11.10081 -10.78792 -10.71275 -10.36751 -9.22870 -8.64444 -8.18506 -6.32511 1.13298 1.38329 1.41850 1.52684 1.60612 2.39105 3.11608 3.29250 3.64411 3.68792 3.99656 4.04069 4.24460 4.28831 4.40242 4.43872 4.56094 4.59539 4.65132 4.72173 4.79234 4.81634 4.89167 4.95636 5.01232 5.09449 5.10780 5.19448 5.26017 5.34134 5.39413 5.46383 5.50699 5.65626 5.81117 6.14190 6.19009 6.57656 6.77081 7.36904 8.88257 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.026974 B = 0.007107 C = 0.006475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.793575 B = 3939.068344 C = 4323.518037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.096 3.904 3 H 0.103 0.897 4 C -0.124 4.124 5 C 0.020 3.980 6 C -0.119 4.119 7 C 0.045 3.955 8 H -0.001 1.001 9 C -0.527 4.527 10 H 0.064 0.936 11 C 0.015 3.985 12 N -0.919 5.919 13 Si 0.957 3.043 14 H -0.261 1.261 15 H -0.282 1.282 16 H -0.282 1.282 17 C -0.008 4.008 18 S -0.395 6.395 19 C -0.118 4.118 20 C 0.086 3.914 21 H 0.080 0.920 22 C -0.136 4.136 23 N -0.667 5.667 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.094 0.906 30 H 0.063 0.937 31 H 0.263 0.737 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.375 7.178 11.649 15.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.016 4.016 3 H 0.121 0.879 4 C -0.166 4.166 5 C -0.090 4.090 6 C -0.157 4.157 7 C 0.025 3.975 8 H 0.017 0.983 9 C -0.566 4.566 10 H 0.082 0.918 11 C -0.185 4.185 12 N -0.558 5.558 13 Si 0.783 3.217 14 H -0.185 1.185 15 H -0.208 1.208 16 H -0.208 1.208 17 C -0.156 4.156 18 S -0.163 6.163 19 C -0.159 4.159 20 C -0.026 4.026 21 H 0.098 0.902 22 C -0.194 4.194 23 N -0.297 5.297 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.112 0.888 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 6.993 6.771 11.646 15.178 hybrid contribution -1.346 -0.348 -1.752 2.237 sum 5.647 6.423 9.894 13.078 Atomic orbital electron populations 1.22426 0.95042 1.03119 1.01352 1.21578 0.95672 0.97952 0.86415 0.87914 1.22414 1.00934 0.92760 1.00452 1.22867 0.96718 0.96618 0.92760 1.22732 0.92105 1.02816 0.98020 1.19508 0.93167 0.94810 0.90045 0.98322 1.21497 1.05632 1.15829 1.13641 0.91776 1.25809 1.00872 0.94867 0.96953 1.70058 1.40460 1.23131 1.22174 0.85506 0.79502 0.78558 0.78168 1.18516 1.20756 1.20782 1.24263 0.89393 1.02308 0.99639 1.87260 1.28903 1.77997 1.22125 1.22213 1.00978 0.99580 0.93165 1.21700 1.00296 0.87324 0.93322 0.90241 1.21731 1.01578 1.00187 0.95907 1.60727 1.15293 1.15114 1.38568 0.91464 0.91552 0.92538 0.91106 0.92134 0.88770 0.91894 0.92815 0.90555 0.92372 0.92119 0.91436 0.91065 0.91978 0.91964 0.83424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.18 7.48 71.98 0.54 -3.64 16 2 C 0.10 2.24 3.69 44.97 0.17 2.40 16 3 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 4 C -0.12 -3.57 4.50 30.48 0.14 -3.43 16 5 C 0.02 0.66 0.79 -11.06 -0.01 0.65 16 6 C -0.12 -4.65 3.26 30.69 0.10 -4.55 16 7 C 0.05 2.24 2.46 -10.76 -0.03 2.21 16 8 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 9 C -0.53 -27.84 8.43 25.60 0.22 -27.62 16 10 H 0.06 3.26 7.53 -2.91 -0.02 3.24 16 11 C 0.01 0.79 5.31 84.65 0.45 1.24 16 12 N -0.92 -52.60 11.82 21.44 0.25 -52.35 16 13 Si 0.96 42.36 29.54 68.60 2.03 44.39 16 14 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 15 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 16 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 17 C -0.01 -0.39 6.18 72.74 0.45 0.06 16 18 S -0.39 -16.55 22.00 -56.49 -1.24 -17.80 16 19 C -0.12 -3.42 4.00 30.48 0.12 -3.30 16 20 C 0.09 2.01 2.65 44.97 0.12 2.13 16 21 H 0.08 2.09 5.09 -2.39 -0.01 2.08 16 22 C -0.14 -2.55 9.47 71.98 0.68 -1.87 16 23 N -0.67 -14.21 6.30 -469.15 -2.95 -17.16 16 24 H 0.07 1.92 3.10 -2.39 -0.01 1.91 16 25 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.06 1.56 7.00 -2.39 -0.02 1.54 16 27 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.09 3.57 3.66 -2.39 -0.01 3.56 16 30 H 0.06 2.38 6.06 -2.39 -0.01 2.37 16 31 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 32 H 0.08 4.19 7.12 -2.39 -0.02 4.18 16 33 H 0.06 2.88 8.10 -2.39 -0.02 2.86 16 34 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.07 1.86 8.14 -2.38 -0.02 1.85 16 36 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 39 H 0.35 6.45 8.79 -89.70 -0.79 5.66 16 Total: -1.00 -58.21 295.38 1.28 -56.93 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: 0.25 Total: 21.70 kcal Atomic # 6 Polarization: -38.66 SS G_CDS: 2.94 Total: -35.71 kcal Atomic # 7 Polarization: -66.81 SS G_CDS: -2.70 Total: -69.51 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 16 Polarization: -16.55 SS G_CDS: -1.24 Total: -17.80 kcal Total: -58.21 1.28 -56.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259785928.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.071 kcal (2) G-P(sol) polarization free energy of solvation -58.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds