Wall clock time and date at job start Mon Mar 30 2020 06:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47183 * 2 1 4 4 C 1.53167 * 109.47845 * 239.98591 * 2 1 3 5 5 C 1.52441 * 109.31858 * 181.88606 * 4 2 1 6 6 C 1.53718 * 110.48530 * 293.37223 * 5 4 2 7 7 C 1.53982 * 108.85971 * 269.02876 * 6 5 4 8 8 H 1.08993 * 109.92659 * 72.77696 * 7 6 5 9 9 C 1.50695 * 109.92520 * 193.90047 * 7 6 5 10 10 H 1.08004 * 120.00263 * 0.02562 * 9 7 6 11 11 C 1.37876 * 120.00087 * 179.97438 * 9 7 6 12 12 N 1.31516 * 119.99812 * 0.02562 * 11 9 7 13 13 Si 1.86799 * 120.00311 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47092 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46869 * 119.99998 * 13 11 9 16 16 H 1.48499 * 109.47546 * 240.00228 * 13 11 9 17 17 C 1.55187 * 106.99193 * 313.23425 * 7 6 5 18 18 S 1.82680 * 109.95827 * 177.81086 * 5 4 2 19 19 C 1.52442 * 110.70650 * 56.10115 * 5 4 2 20 20 C 1.53163 * 109.32217 * 303.90705 * 19 5 4 21 21 H 1.09008 * 109.47328 * 298.11398 * 20 19 5 22 22 C 1.53000 * 109.47955 * 178.09903 * 20 19 5 23 23 N 1.46848 * 109.47396 * 120.00899 * 2 1 3 24 24 H 1.08998 * 109.47548 * 299.98639 * 1 2 3 25 25 H 1.09006 * 109.47323 * 59.99178 * 1 2 3 26 26 H 1.09003 * 109.47028 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.49674 * 301.84528 * 4 2 1 28 28 H 1.09007 * 109.49450 * 61.90203 * 4 2 1 29 29 H 1.08999 * 109.61704 * 28.93162 * 6 5 4 30 30 H 1.09005 * 109.61823 * 149.28866 * 6 5 4 31 31 H 0.96998 * 119.99962 * 180.02562 * 12 11 9 32 32 H 1.08997 * 110.84648 * 160.01162 * 17 7 6 33 33 H 1.09005 * 110.85089 * 283.44075 * 17 7 6 34 34 H 1.09004 * 109.49297 * 63.85471 * 19 5 4 35 35 H 1.09000 * 109.50039 * 183.91718 * 19 5 4 36 36 H 1.08999 * 109.47009 * 300.02130 * 22 20 19 37 37 H 1.09004 * 109.47017 * 60.01944 * 22 20 19 38 38 H 1.08994 * 109.47637 * 180.02562 * 22 20 19 39 39 H 1.00901 * 111.00066 * 306.41202 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0407 -0.7223 -1.2504 5 6 3.5644 -0.7613 -1.2232 6 6 4.1414 0.6565 -1.3642 7 6 4.3730 0.9534 -2.8573 8 1 3.4175 1.1115 -3.3572 9 6 5.2404 2.1763 -3.0091 10 1 5.5971 2.6976 -2.1331 11 6 5.5796 2.6291 -4.2665 12 7 5.1457 1.9941 -5.3333 13 14 6.6542 4.1454 -4.4548 14 1 7.0069 4.6721 -3.1119 15 1 7.8953 3.7847 -5.1861 16 1 5.9153 5.1844 -5.2161 17 6 5.0919 -0.2831 -3.4594 18 16 4.1907 -1.6764 -2.6750 19 6 4.0640 -1.4156 0.0598 20 6 3.4863 -0.6706 1.2669 21 1 3.8351 0.3621 1.2575 22 6 3.9473 -1.3532 2.5562 23 7 2.0195 -0.6924 1.1989 24 1 -0.3634 0.5136 0.8901 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6509 -1.7400 -1.2673 28 1 1.7057 -0.1897 -2.1405 29 1 3.4385 1.3803 -0.9517 30 1 5.0890 0.7208 -0.8293 31 1 5.3846 2.3124 -6.2178 32 1 4.9781 -0.3084 -4.5431 33 1 6.1458 -0.2928 -3.1812 34 1 3.7418 -2.4566 0.0866 35 1 5.1527 -1.3708 0.0910 36 1 3.5986 -2.3858 2.5653 37 1 5.0361 -1.3369 2.6067 38 1 3.5358 -0.8232 3.4152 39 1 1.6129 -0.2997 2.0347 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259785931.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:14 Heat of formation + Delta-G solvation = -42.736421 kcal Electronic energy + Delta-G solvation = -17928.702404 eV Core-core repulsion = 15381.124546 eV Total energy + Delta-G solvation = -2547.577858 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.58594 -37.03426 -34.49650 -34.43895 -32.25484 -29.04508 -27.47925 -27.40328 -27.01404 -23.31499 -22.21546 -21.88613 -19.39245 -18.46321 -17.42006 -17.03216 -16.59031 -16.30787 -15.90573 -15.29706 -15.03033 -14.43200 -14.29084 -13.94743 -13.62049 -13.32409 -13.21476 -12.96896 -12.92881 -12.81659 -12.68019 -12.59738 -12.43848 -12.19443 -11.92251 -11.75252 -11.57302 -11.41515 -11.14710 -11.10865 -10.71302 -10.42218 -9.30313 -8.61952 -8.20496 -6.34908 1.09466 1.37633 1.40774 1.51713 1.65080 2.37940 3.09993 3.17718 3.66700 3.76539 3.94364 4.04882 4.17832 4.32463 4.41829 4.44235 4.51961 4.59365 4.61463 4.69645 4.77544 4.87253 4.89662 4.95632 4.99964 5.03387 5.08712 5.15644 5.22597 5.27653 5.34750 5.40779 5.46842 5.61219 5.77309 6.13375 6.15253 6.60482 6.73645 7.34537 8.86483 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.024930 B = 0.006440 C = 0.006292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.856436 B = 4346.615290 C = 4448.829379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.089 3.911 3 H 0.033 0.967 4 C -0.080 4.080 5 C 0.009 3.991 6 C -0.100 4.100 7 C 0.048 3.952 8 H 0.008 0.992 9 C -0.532 4.532 10 H 0.060 0.940 11 C 0.017 3.983 12 N -0.917 5.917 13 Si 0.959 3.041 14 H -0.264 1.264 15 H -0.280 1.280 16 H -0.279 1.279 17 C -0.017 4.017 18 S -0.376 6.376 19 C -0.078 4.078 20 C 0.089 3.911 21 H 0.034 0.966 22 C -0.136 4.136 23 N -0.677 5.677 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.264 0.736 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.583 -3.738 13.935 15.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.022 4.022 3 H 0.051 0.949 4 C -0.120 4.120 5 C -0.101 4.101 6 C -0.139 4.139 7 C 0.028 3.972 8 H 0.026 0.974 9 C -0.571 4.571 10 H 0.079 0.921 11 C -0.183 4.183 12 N -0.555 5.555 13 Si 0.784 3.216 14 H -0.188 1.188 15 H -0.206 1.206 16 H -0.205 1.205 17 C -0.166 4.166 18 S -0.144 6.144 19 C -0.118 4.118 20 C -0.023 4.023 21 H 0.052 0.948 22 C -0.194 4.194 23 N -0.311 5.311 24 H 0.091 0.909 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -5.699 -5.552 13.050 15.284 hybrid contribution 1.056 2.760 -0.492 2.996 sum -4.643 -2.792 12.558 13.677 Atomic orbital electron populations 1.21750 0.92463 1.02809 1.02494 1.21504 0.96344 0.94542 0.89851 0.94877 1.21555 0.91559 1.01280 0.97593 1.22966 0.98241 0.95689 0.93180 1.22343 0.99992 0.93684 0.97840 1.19587 0.94641 0.92324 0.90647 0.97391 1.21387 1.31893 1.11232 0.92602 0.92133 1.25797 0.97065 0.99821 0.95627 1.70058 1.45801 1.41295 0.98370 0.85488 0.78440 0.79253 0.78429 1.18804 1.20605 1.20522 1.24221 0.98801 0.92012 1.01535 1.86974 1.69243 1.25881 1.32277 1.21599 0.99799 0.99467 0.90941 1.21499 0.87909 0.97570 0.95299 0.94822 1.21748 1.01367 1.01236 0.95057 1.60312 1.06370 1.59602 1.04863 0.90901 0.92200 0.91671 0.91267 0.92748 0.91114 0.92264 0.92673 0.90607 0.92361 0.91234 0.91531 0.91774 0.91655 0.91108 0.82722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.43 71.98 0.68 -2.17 16 2 C 0.09 2.31 2.86 44.98 0.13 2.44 16 3 H 0.03 0.94 6.45 -2.39 -0.02 0.93 16 4 C -0.08 -2.61 4.20 30.46 0.13 -2.48 16 5 C 0.01 0.31 0.73 -10.92 -0.01 0.30 16 6 C -0.10 -4.06 3.83 31.17 0.12 -3.94 16 7 C 0.05 2.40 2.48 -10.46 -0.03 2.38 16 8 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 9 C -0.53 -28.52 8.52 25.60 0.22 -28.30 16 10 H 0.06 3.16 7.76 -2.91 -0.02 3.14 16 11 C 0.02 0.92 5.32 84.65 0.45 1.37 16 12 N -0.92 -52.41 11.94 21.45 0.26 -52.15 16 13 Si 0.96 42.54 29.54 68.60 2.03 44.57 16 14 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 15 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 16 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 17 C -0.02 -0.87 6.15 72.73 0.45 -0.42 16 18 S -0.38 -16.00 22.06 -56.49 -1.25 -17.24 16 19 C -0.08 -2.36 4.11 30.46 0.13 -2.23 16 20 C 0.09 2.15 2.87 44.98 0.13 2.28 16 21 H 0.03 0.88 7.53 -2.38 -0.02 0.87 16 22 C -0.14 -2.51 9.43 71.98 0.68 -1.83 16 23 N -0.68 -15.31 6.15 -469.11 -2.89 -18.20 16 24 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 26 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 29 H 0.07 2.74 6.11 -2.39 -0.01 2.73 16 30 H 0.06 2.40 7.70 -2.38 -0.02 2.38 16 31 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 32 H 0.08 4.15 7.19 -2.39 -0.02 4.14 16 33 H 0.06 2.92 8.09 -2.38 -0.02 2.90 16 34 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 35 H 0.07 2.05 8.02 -2.39 -0.02 2.03 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 38 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.35 6.27 8.67 -89.69 -0.78 5.50 16 Total: -1.00 -58.71 308.18 1.45 -57.26 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 0.23 Total: 18.39 kcal Atomic # 6 Polarization: -35.69 SS G_CDS: 3.07 Total: -32.62 kcal Atomic # 7 Polarization: -67.72 SS G_CDS: -2.63 Total: -70.35 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Atomic # 16 Polarization: -16.00 SS G_CDS: -1.25 Total: -17.24 kcal Total: -58.71 1.45 -57.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259785931.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.524 kcal (2) G-P(sol) polarization free energy of solvation -58.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds