Wall clock time and date at job start Mon Mar 30 2020 06:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47558 * 2 1 4 4 C 1.53166 * 109.47563 * 239.98573 * 2 1 3 5 5 C 1.52441 * 109.34974 * 181.87543 * 4 2 1 6 6 C 1.53716 * 110.48886 * 293.35668 * 5 4 2 7 7 C 1.53981 * 108.86712 * 213.83539 * 6 5 4 8 8 H 1.09005 * 110.09973 * 287.33016 * 7 6 5 9 9 C 1.50700 * 109.92935 * 166.09817 * 7 6 5 10 10 H 1.07997 * 120.00022 * 1.01728 * 9 7 6 11 11 C 1.37874 * 119.99906 * 181.02296 * 9 7 6 12 12 N 1.31518 * 120.00024 * 359.97438 * 11 9 7 13 13 Si 1.86798 * 120.00142 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47203 * 89.99549 * 13 11 9 15 15 H 1.48502 * 109.47132 * 210.00151 * 13 11 9 16 16 H 1.48507 * 109.46851 * 329.99543 * 13 11 9 17 17 C 1.55174 * 106.99357 * 46.75842 * 7 6 5 18 18 S 1.82680 * 109.96525 * 177.79592 * 5 4 2 19 19 C 1.52508 * 110.68103 * 56.06137 * 5 4 2 20 20 C 1.53164 * 109.34286 * 303.94622 * 19 5 4 21 21 H 1.08998 * 109.47770 * 298.11713 * 20 19 5 22 22 C 1.52999 * 109.48309 * 178.09992 * 20 19 5 23 23 N 1.46856 * 109.43950 * 58.11000 * 20 19 5 24 24 H 1.09004 * 109.47513 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46933 * 300.01604 * 1 2 3 26 26 H 1.09003 * 109.47245 * 60.01466 * 1 2 3 27 27 H 1.09002 * 109.49670 * 301.84665 * 4 2 1 28 28 H 1.08996 * 109.49737 * 61.90661 * 4 2 1 29 29 H 1.08998 * 109.61812 * 333.73573 * 6 5 4 30 30 H 1.09006 * 109.62180 * 93.93095 * 6 5 4 31 31 H 0.96998 * 120.00039 * 180.02562 * 12 11 9 32 32 H 1.09001 * 110.85758 * 199.99384 * 17 7 6 33 33 H 1.09007 * 111.02416 * 76.44068 * 17 7 6 34 34 H 1.09008 * 109.48817 * 183.99114 * 19 5 4 35 35 H 1.09000 * 109.51491 * 63.92751 * 19 5 4 36 36 H 1.08998 * 109.47035 * 300.03473 * 22 20 19 37 37 H 1.08998 * 109.47016 * 60.02765 * 22 20 19 38 38 H 1.08996 * 109.47361 * 180.02562 * 22 20 19 39 39 H 1.00903 * 111.00221 * 61.94237 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0407 -0.7223 -1.2504 5 6 3.5643 -0.7615 -1.2242 6 6 4.1416 0.6561 -1.3659 7 6 5.4618 0.5795 -2.1546 8 1 6.2439 0.1416 -1.5343 9 6 5.8735 1.9584 -2.6022 10 1 5.2693 2.8142 -2.3397 11 6 7.0214 2.1274 -3.3469 12 7 7.7574 1.0852 -3.6663 13 14 7.5321 3.8366 -3.9012 14 1 8.4076 4.4501 -2.8705 15 1 8.2716 3.7402 -5.1853 16 1 6.3229 4.6781 -4.0883 17 6 5.2002 -0.3217 -3.3905 18 16 4.1898 -1.6772 -2.6759 19 6 4.0643 -1.4153 0.0598 20 6 3.4866 -0.6701 1.2668 21 1 3.8350 0.3626 1.2572 22 6 3.9479 -1.3522 2.5563 23 7 2.0197 -0.6926 1.1988 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5141 0.8898 26 1 -0.3634 0.5136 -0.8901 27 1 1.6508 -1.7401 -1.2673 28 1 1.7058 -0.1897 -2.1404 29 1 3.4323 1.2883 -1.9001 30 1 4.3295 1.0753 -0.3774 31 1 8.5652 1.2042 -4.1899 32 1 6.1362 -0.7071 -3.7948 33 1 4.6414 0.2168 -4.1559 34 1 5.1529 -1.3696 0.0911 35 1 3.7430 -2.4565 0.0872 36 1 3.5996 -2.3850 2.5656 37 1 5.0366 -1.3356 2.6066 38 1 3.5363 -0.8221 3.4151 39 1 1.6704 -1.6384 1.2380 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259785937.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:18 Heat of formation + Delta-G solvation = -29.929781 kcal Electronic energy + Delta-G solvation = -17943.099006 eV Core-core repulsion = 15396.076485 eV Total energy + Delta-G solvation = -2547.022521 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.48974 -35.31881 -33.39508 -32.66215 -30.37781 -28.06274 -26.27574 -25.53495 -25.19936 -21.99842 -20.90613 -20.53302 -18.49715 -16.50187 -15.78525 -15.42897 -14.67706 -14.58980 -14.34542 -14.15540 -13.57654 -13.34982 -12.81676 -12.58942 -12.39914 -12.14540 -11.72581 -11.58541 -11.49201 -11.36912 -11.04983 -11.00428 -10.79692 -10.68294 -10.54048 -10.50002 -10.31824 -9.87173 -9.53450 -9.40589 -8.82264 -8.50857 -8.09792 -6.92428 -6.16574 -4.23054 2.68694 3.21465 3.29688 3.32388 3.43834 4.29826 4.32135 4.91671 4.94200 5.13614 5.16690 5.32706 5.38995 5.45190 5.56982 5.64600 5.68706 5.83122 5.86219 5.95118 6.03882 6.13793 6.17926 6.22052 6.28884 6.32793 6.39069 6.45586 6.48640 6.71096 6.73656 6.84082 7.21956 7.36069 7.53443 7.60181 7.81193 8.17291 8.79187 9.42713 10.91148 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.025087 B = 0.006435 C = 0.006295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.830017 B = 4350.183434 C = 4447.121750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.085 3.915 3 H 0.084 0.916 4 C -0.123 4.123 5 C 0.001 3.999 6 C -0.111 4.111 7 C 0.050 3.950 8 H 0.040 0.960 9 C -0.516 4.516 10 H 0.060 0.940 11 C 0.065 3.935 12 N -0.887 5.887 13 Si 0.895 3.105 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.273 1.273 17 C -0.020 4.020 18 S -0.377 6.377 19 C -0.123 4.123 20 C 0.083 3.917 21 H 0.086 0.914 22 C -0.141 4.141 23 N -0.677 5.677 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.264 0.736 32 H 0.105 0.895 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.050 0.950 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.828 -3.441 7.831 13.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.027 4.027 3 H 0.102 0.898 4 C -0.164 4.164 5 C -0.108 4.108 6 C -0.150 4.150 7 C 0.030 3.970 8 H 0.058 0.942 9 C -0.555 4.555 10 H 0.078 0.922 11 C -0.138 4.138 12 N -0.525 5.525 13 Si 0.723 3.277 14 H -0.205 1.205 15 H -0.211 1.211 16 H -0.198 1.198 17 C -0.167 4.167 18 S -0.145 6.145 19 C -0.164 4.164 20 C -0.029 4.029 21 H 0.104 0.896 22 C -0.199 4.199 23 N -0.306 5.306 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.123 0.877 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.899 -4.111 7.692 13.194 hybrid contribution 0.895 1.262 -0.952 1.816 sum -9.004 -2.850 6.740 11.603 Atomic orbital electron populations 1.21774 0.94545 1.01685 1.01894 1.21647 0.94770 0.98752 0.87548 0.89800 1.22295 0.93608 1.00974 0.99515 1.22742 0.96341 0.97891 0.93853 1.22499 0.99176 0.92191 1.01105 1.19670 0.91559 0.95410 0.90406 0.94196 1.21027 1.08338 0.91914 1.34242 0.92183 1.25008 0.96120 0.97023 0.95665 1.69914 1.15248 1.29292 1.38018 0.86535 0.78760 0.84255 0.78174 1.20503 1.21104 1.19783 1.24614 0.98677 0.92020 1.01411 1.87030 1.65221 1.29706 1.32591 1.22275 1.02112 0.98808 0.93217 1.21709 0.87089 1.00396 0.93682 0.89601 1.21767 1.01047 1.00105 0.96974 1.60787 1.08826 1.21706 1.39284 0.93017 0.92027 0.92208 0.92125 0.90941 0.92050 0.91595 0.92644 0.87663 0.91449 0.90514 0.92157 0.93049 0.92042 0.92070 0.84840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.47 37.16 0.35 -1.17 16 2 C 0.08 1.10 2.86 -67.65 -0.19 0.91 16 3 H 0.08 1.20 7.53 -51.93 -0.39 0.81 16 4 C -0.12 -1.85 4.09 -26.93 -0.11 -1.96 16 5 C 0.00 0.02 0.73 -90.79 -0.07 -0.04 16 6 C -0.11 -2.21 3.83 -25.85 -0.10 -2.31 16 7 C 0.05 1.19 2.50 -90.11 -0.23 0.97 16 8 H 0.04 1.06 8.14 -51.93 -0.42 0.63 16 9 C -0.52 -13.53 8.53 -34.44 -0.29 -13.82 16 10 H 0.06 1.55 7.76 -52.49 -0.41 1.15 16 11 C 0.06 1.73 5.32 -17.82 -0.09 1.63 16 12 N -0.89 -24.58 11.86 55.43 0.66 -23.93 16 13 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 14 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 15 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 17 C -0.02 -0.47 6.11 38.31 0.23 -0.23 16 18 S -0.38 -7.83 22.06 -107.50 -2.37 -10.20 16 19 C -0.12 -1.95 4.18 -26.90 -0.11 -2.06 16 20 C 0.08 1.12 2.85 -67.65 -0.19 0.93 16 21 H 0.09 1.28 6.45 -51.93 -0.34 0.95 16 22 C -0.14 -1.62 9.47 37.16 0.35 -1.27 16 23 N -0.68 -8.51 6.12 -99.62 -0.61 -9.12 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.07 1.15 8.02 -51.93 -0.42 0.73 16 29 H 0.06 1.24 7.70 -51.93 -0.40 0.84 16 30 H 0.07 1.26 6.12 -51.93 -0.32 0.94 16 31 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.11 2.73 7.14 -51.93 -0.37 2.36 16 33 H 0.07 1.63 8.10 -51.92 -0.42 1.21 16 34 H 0.08 1.35 8.14 -51.92 -0.42 0.92 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.33 3.90 8.73 -39.29 -0.34 3.56 16 LS Contribution 308.14 15.07 4.64 4.64 Total: -1.00 -26.60 308.14 -9.92 -36.51 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.76 Total: 4.93 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: -0.45 Total: -18.43 kcal Atomic # 7 Polarization: -33.09 SS G_CDS: 0.05 Total: -33.04 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: -7.83 SS G_CDS: -2.37 Total: -10.20 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -26.60 -9.92 -36.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259785937.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.585 kcal (2) G-P(sol) polarization free energy of solvation -26.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds