Wall clock time and date at job start Mon Mar 30 2020 06:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47558 * 2 1 4 4 C 1.53166 * 109.47563 * 239.98573 * 2 1 3 5 5 C 1.52441 * 109.34974 * 181.87543 * 4 2 1 6 6 C 1.53716 * 110.48886 * 293.35668 * 5 4 2 7 7 C 1.53981 * 108.86712 * 213.83539 * 6 5 4 8 8 H 1.09005 * 110.09973 * 287.33016 * 7 6 5 9 9 C 1.50700 * 109.92935 * 166.09817 * 7 6 5 10 10 H 1.07997 * 120.00022 * 1.01728 * 9 7 6 11 11 C 1.37874 * 119.99906 * 181.02296 * 9 7 6 12 12 N 1.31518 * 120.00024 * 359.97438 * 11 9 7 13 13 Si 1.86798 * 120.00142 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47203 * 89.99549 * 13 11 9 15 15 H 1.48502 * 109.47132 * 210.00151 * 13 11 9 16 16 H 1.48507 * 109.46851 * 329.99543 * 13 11 9 17 17 C 1.55174 * 106.99357 * 46.75842 * 7 6 5 18 18 S 1.82680 * 109.96525 * 177.79592 * 5 4 2 19 19 C 1.52508 * 110.68103 * 56.06137 * 5 4 2 20 20 C 1.53164 * 109.34286 * 303.94622 * 19 5 4 21 21 H 1.08998 * 109.47770 * 298.11713 * 20 19 5 22 22 C 1.52999 * 109.48309 * 178.09992 * 20 19 5 23 23 N 1.46856 * 109.43950 * 58.11000 * 20 19 5 24 24 H 1.09004 * 109.47513 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46933 * 300.01604 * 1 2 3 26 26 H 1.09003 * 109.47245 * 60.01466 * 1 2 3 27 27 H 1.09002 * 109.49670 * 301.84665 * 4 2 1 28 28 H 1.08996 * 109.49737 * 61.90661 * 4 2 1 29 29 H 1.08998 * 109.61812 * 333.73573 * 6 5 4 30 30 H 1.09006 * 109.62180 * 93.93095 * 6 5 4 31 31 H 0.96998 * 120.00039 * 180.02562 * 12 11 9 32 32 H 1.09001 * 110.85758 * 199.99384 * 17 7 6 33 33 H 1.09007 * 111.02416 * 76.44068 * 17 7 6 34 34 H 1.09008 * 109.48817 * 183.99114 * 19 5 4 35 35 H 1.09000 * 109.51491 * 63.92751 * 19 5 4 36 36 H 1.08998 * 109.47035 * 300.03473 * 22 20 19 37 37 H 1.08998 * 109.47016 * 60.02765 * 22 20 19 38 38 H 1.08996 * 109.47361 * 180.02562 * 22 20 19 39 39 H 1.00903 * 111.00221 * 61.94237 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0407 -0.7223 -1.2504 5 6 3.5643 -0.7615 -1.2242 6 6 4.1416 0.6561 -1.3659 7 6 5.4618 0.5795 -2.1546 8 1 6.2439 0.1416 -1.5343 9 6 5.8735 1.9584 -2.6022 10 1 5.2693 2.8142 -2.3397 11 6 7.0214 2.1274 -3.3469 12 7 7.7574 1.0852 -3.6663 13 14 7.5321 3.8366 -3.9012 14 1 8.4076 4.4501 -2.8705 15 1 8.2716 3.7402 -5.1853 16 1 6.3229 4.6781 -4.0883 17 6 5.2002 -0.3217 -3.3905 18 16 4.1898 -1.6772 -2.6759 19 6 4.0643 -1.4153 0.0598 20 6 3.4866 -0.6701 1.2668 21 1 3.8350 0.3626 1.2572 22 6 3.9479 -1.3522 2.5563 23 7 2.0197 -0.6926 1.1988 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5141 0.8898 26 1 -0.3634 0.5136 -0.8901 27 1 1.6508 -1.7401 -1.2673 28 1 1.7058 -0.1897 -2.1404 29 1 3.4323 1.2883 -1.9001 30 1 4.3295 1.0753 -0.3774 31 1 8.5652 1.2042 -4.1899 32 1 6.1362 -0.7071 -3.7948 33 1 4.6414 0.2168 -4.1559 34 1 5.1529 -1.3696 0.0911 35 1 3.7430 -2.4565 0.0872 36 1 3.5996 -2.3850 2.5656 37 1 5.0366 -1.3356 2.6066 38 1 3.5363 -0.8221 3.4151 39 1 1.6704 -1.6384 1.2380 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259785937.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:17 Heat of formation + Delta-G solvation = -44.419851 kcal Electronic energy + Delta-G solvation = -17943.727342 eV Core-core repulsion = 15396.076485 eV Total energy + Delta-G solvation = -2547.650857 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.74937 -37.03982 -34.45182 -34.41146 -32.09173 -29.00564 -27.49259 -27.40734 -26.96481 -23.24270 -22.36623 -21.87211 -19.96454 -18.49475 -17.39577 -16.64034 -16.40920 -16.01301 -15.68795 -15.51205 -15.01383 -14.80178 -14.27088 -14.00475 -13.69830 -13.31281 -13.18986 -12.97921 -12.94866 -12.79523 -12.68837 -12.44165 -12.35831 -12.14633 -11.95540 -11.74869 -11.65362 -11.48582 -11.28288 -11.13631 -10.75503 -10.49030 -9.24551 -8.64785 -8.20800 -6.35313 1.07283 1.38610 1.40744 1.50665 1.62497 2.37851 3.09625 3.26335 3.63798 3.65987 4.00392 4.01079 4.19406 4.30209 4.39908 4.41161 4.53544 4.60737 4.61410 4.69841 4.75736 4.83468 4.90717 4.92953 4.98716 5.02756 5.08756 5.15556 5.24440 5.32746 5.36927 5.39966 5.44173 5.60481 5.76941 6.12979 6.14810 6.56082 6.73115 7.34221 8.85776 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.025087 B = 0.006435 C = 0.006295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.830017 B = 4350.183434 C = 4447.121750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.090 3.910 3 H 0.072 0.928 4 C -0.116 4.116 5 C 0.011 3.989 6 C -0.100 4.100 7 C 0.049 3.951 8 H 0.007 0.993 9 C -0.533 4.533 10 H 0.061 0.939 11 C 0.017 3.983 12 N -0.917 5.917 13 Si 0.959 3.041 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.265 1.265 17 C -0.016 4.016 18 S -0.381 6.381 19 C -0.118 4.118 20 C 0.090 3.910 21 H 0.072 0.928 22 C -0.136 4.136 23 N -0.668 5.668 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.264 0.736 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.649 -3.159 9.172 15.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.023 4.023 3 H 0.090 0.910 4 C -0.157 4.157 5 C -0.098 4.098 6 C -0.138 4.138 7 C 0.028 3.972 8 H 0.025 0.975 9 C -0.572 4.572 10 H 0.079 0.921 11 C -0.183 4.183 12 N -0.556 5.556 13 Si 0.784 3.216 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.190 1.190 17 C -0.164 4.164 18 S -0.150 6.150 19 C -0.160 4.160 20 C -0.022 4.022 21 H 0.090 0.910 22 C -0.193 4.193 23 N -0.298 5.298 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -11.738 -3.835 9.046 15.307 hybrid contribution 1.458 1.129 -1.340 2.279 sum -10.280 -2.706 7.706 13.130 Atomic orbital electron populations 1.21721 0.92267 1.02654 1.02592 1.21634 0.96475 0.97731 0.86411 0.90997 1.22284 0.91096 1.01789 1.00574 1.22935 0.98176 0.95805 0.92932 1.22321 0.96989 0.93817 1.00690 1.19579 0.92688 0.94412 0.90471 0.97482 1.21372 1.08636 0.92912 1.34290 0.92052 1.25796 0.96183 1.00593 0.95734 1.70048 1.15602 1.31262 1.38654 0.85540 0.78526 0.79906 0.77665 1.19922 1.20977 1.18956 1.24218 0.97888 0.93175 1.01103 1.86950 1.64544 1.29114 1.34347 1.22263 1.00849 0.99521 0.93321 1.21635 0.87653 0.99380 0.93557 0.91033 1.21721 1.01023 1.00695 0.95895 1.60785 1.07854 1.22422 1.38703 0.91914 0.91206 0.91695 0.91238 0.91571 0.92227 0.90817 0.92689 0.90621 0.92524 0.92725 0.91269 0.91818 0.92225 0.91006 0.83658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 9.47 71.98 0.68 -1.76 16 2 C 0.09 2.10 2.86 44.98 0.13 2.23 16 3 H 0.07 1.90 7.53 -2.39 -0.02 1.88 16 4 C -0.12 -3.27 4.09 30.46 0.12 -3.15 16 5 C 0.01 0.37 0.73 -10.90 -0.01 0.36 16 6 C -0.10 -3.98 3.83 31.17 0.12 -3.86 16 7 C 0.05 2.41 2.50 -10.46 -0.03 2.39 16 8 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 9 C -0.53 -28.52 8.53 25.60 0.22 -28.31 16 10 H 0.06 3.19 7.76 -2.91 -0.02 3.17 16 11 C 0.02 0.92 5.32 84.65 0.45 1.37 16 12 N -0.92 -52.40 11.86 21.45 0.25 -52.15 16 13 Si 0.96 42.56 29.54 68.60 2.03 44.58 16 14 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 15 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 16 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 17 C -0.02 -0.77 6.11 72.73 0.44 -0.33 16 18 S -0.38 -15.94 22.06 -56.49 -1.25 -17.18 16 19 C -0.12 -3.62 4.18 30.49 0.13 -3.49 16 20 C 0.09 2.26 2.85 44.98 0.13 2.39 16 21 H 0.07 2.04 6.45 -2.39 -0.02 2.02 16 22 C -0.14 -2.77 9.47 71.98 0.68 -2.09 16 23 N -0.67 -14.80 6.12 -469.09 -2.87 -17.67 16 24 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.07 1.97 8.02 -2.39 -0.02 1.96 16 29 H 0.06 2.39 7.70 -2.39 -0.02 2.37 16 30 H 0.07 2.81 6.12 -2.38 -0.01 2.80 16 31 H 0.26 14.37 8.31 -92.71 -0.77 13.59 16 32 H 0.08 4.14 7.14 -2.39 -0.02 4.13 16 33 H 0.06 2.84 8.10 -2.38 -0.02 2.82 16 34 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 35 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.07 1.34 8.14 -2.39 -0.02 1.33 16 39 H 0.34 6.75 8.73 -89.69 -0.78 5.97 16 Total: -1.00 -57.91 308.14 1.46 -56.45 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: 0.23 Total: 20.23 kcal Atomic # 6 Polarization: -37.33 SS G_CDS: 3.07 Total: -34.26 kcal Atomic # 7 Polarization: -67.20 SS G_CDS: -2.62 Total: -69.82 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Atomic # 16 Polarization: -15.94 SS G_CDS: -1.25 Total: -17.18 kcal Total: -57.91 1.46 -56.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259785937.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.029 kcal (2) G-P(sol) polarization free energy of solvation -57.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds