Wall clock time and date at job start Mon Mar 30 2020 06:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00136 * 2 1 4 4 H 1.48496 * 109.47253 * 269.99958 * 3 2 1 5 5 H 1.48495 * 109.47182 * 30.00568 * 3 2 1 6 6 H 1.48508 * 109.47124 * 150.00486 * 3 2 1 7 7 C 1.37878 * 119.99558 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99610 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00302 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.45736 * 305.41976 * 9 7 2 11 11 C 1.53035 * 109.46503 * 65.39909 * 9 7 2 12 12 C 1.53113 * 109.28064 * 179.19691 * 11 9 7 13 13 C 1.53117 * 109.16206 * 302.34105 * 12 11 9 14 14 C 1.53037 * 109.27615 * 57.65557 * 13 12 11 15 15 N 1.46851 * 109.52316 * 300.81859 * 14 13 12 16 16 C 1.46897 * 110.99845 * 185.83985 * 15 14 13 17 17 H 1.09005 * 109.38632 * 186.33435 * 16 15 14 18 18 C 1.52580 * 109.39156 * 306.13769 * 16 15 14 19 19 C 1.52587 * 110.69290 * 190.84736 * 18 16 15 20 20 C 1.53118 * 109.94495 * 289.26314 * 19 18 16 21 21 S 1.81742 * 108.80636 * 63.08264 * 20 19 18 22 22 C 1.53098 * 109.38920 * 66.63367 * 16 15 14 23 23 H 0.97000 * 119.99765 * 359.97438 * 1 2 3 24 24 H 1.09008 * 109.49994 * 299.13551 * 11 9 7 25 25 H 1.09002 * 109.50672 * 59.21149 * 11 9 7 26 26 H 1.09001 * 109.52332 * 62.24789 * 12 11 9 27 27 H 1.09007 * 109.52579 * 182.43387 * 12 11 9 28 28 H 1.09001 * 109.50713 * 177.59750 * 13 12 11 29 29 H 1.09001 * 109.50163 * 297.71615 * 13 12 11 30 30 H 1.09005 * 109.45923 * 180.80912 * 14 13 12 31 31 H 1.08995 * 109.46515 * 60.84079 * 14 13 12 32 32 H 1.09005 * 109.22561 * 311.14681 * 18 16 15 33 33 H 1.08996 * 109.23045 * 70.54617 * 18 16 15 34 34 H 1.09004 * 109.38832 * 49.45392 * 19 18 16 35 35 H 1.09001 * 109.39002 * 169.14999 * 19 18 16 36 36 H 1.09001 * 109.60573 * 303.27580 * 20 19 18 37 37 H 1.08995 * 109.57321 * 182.87187 * 20 19 18 38 38 H 1.08994 * 109.57211 * 296.62833 * 22 16 15 39 39 H 1.08996 * 109.57578 * 57.01527 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.5539 -2.5159 0.8373 11 6 0.4752 -2.6401 -1.3122 12 6 -0.2726 -3.9762 -1.3162 13 6 0.7332 -5.1157 -1.1300 14 6 1.5014 -4.9030 0.1764 15 7 2.2000 -3.6121 0.1303 16 6 3.0587 -3.4359 1.3091 17 1 3.4755 -2.4287 1.3058 18 6 2.2299 -3.6371 2.5742 19 6 3.0153 -3.2027 3.8082 20 6 4.1500 -4.1940 4.0807 21 16 5.3042 -4.1638 2.6772 22 6 4.1994 -4.4560 1.2640 23 1 -0.4850 0.8401 0.0004 24 1 -0.2401 -1.8225 -1.4016 25 1 1.1703 -2.6089 -2.1513 26 1 -0.9955 -3.9915 -0.5005 27 1 -0.7918 -4.1003 -2.2666 28 1 0.2022 -6.0667 -1.0892 29 1 1.4324 -5.1241 -1.9661 30 1 2.2284 -5.7050 0.3048 31 1 0.8032 -4.9085 1.0133 32 1 1.3170 -3.0456 2.5032 33 1 1.9681 -4.6910 2.6681 34 1 3.4335 -2.2102 3.6401 35 1 2.3480 -3.1714 4.6695 36 1 3.7396 -5.1974 4.1946 37 1 4.6751 -3.9066 4.9916 38 1 3.7900 -5.4644 1.3229 39 1 4.7567 -4.3398 0.3345 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259801442.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:57 Heat of formation + Delta-G solvation = -13.977471 kcal Electronic energy + Delta-G solvation = -18331.336147 eV Core-core repulsion = 15785.005370 eV Total energy + Delta-G solvation = -2546.330777 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.93560 -35.64266 -32.93295 -32.47860 -29.72158 -28.96973 -26.78396 -25.22794 -23.45683 -21.80526 -21.25470 -19.81656 -18.28621 -16.72297 -16.14657 -15.09247 -14.93312 -14.31039 -14.26717 -13.58146 -13.46434 -13.23103 -13.15428 -12.82267 -12.43219 -12.33674 -12.09169 -11.49897 -11.02548 -10.98472 -10.94031 -10.76458 -10.64448 -10.52649 -10.21876 -10.11455 -9.96187 -9.67735 -9.47513 -9.22863 -8.75623 -8.40451 -7.45372 -7.14509 -6.04526 -4.07733 2.06160 2.79072 3.30121 3.37002 3.40952 4.40032 4.91447 5.01708 5.09946 5.19678 5.27921 5.41421 5.51463 5.60021 5.69487 5.73478 5.78961 5.87406 5.96474 6.03056 6.20228 6.30365 6.33893 6.37918 6.42088 6.54808 6.63680 6.74253 6.82317 6.87258 7.13155 7.25006 7.52230 7.68258 7.81671 8.13270 8.27853 8.58092 8.99821 9.57438 11.03149 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.016582 B = 0.009561 C = 0.006893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.183541 B = 2927.772565 C = 4061.128906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.505 4.505 8 H 0.063 0.937 9 C 0.220 3.780 10 H 0.006 0.994 11 C -0.102 4.102 12 C -0.123 4.123 13 C -0.111 4.111 14 C 0.053 3.947 15 N -0.526 5.526 16 C 0.092 3.908 17 H 0.111 0.889 18 C -0.154 4.154 19 C -0.116 4.116 20 C -0.077 4.077 21 S -0.282 6.282 22 C -0.064 4.064 23 H 0.260 0.740 24 H 0.084 0.916 25 H 0.044 0.956 26 H 0.047 0.953 27 H 0.044 0.956 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.023 0.977 32 H 0.080 0.920 33 H 0.051 0.949 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.074 0.926 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.427 -8.817 4.304 10.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.197 1.197 7 C -0.544 4.544 8 H 0.081 0.919 9 C 0.114 3.886 10 H 0.024 0.976 11 C -0.140 4.140 12 C -0.160 4.160 13 C -0.149 4.149 14 C -0.076 4.076 15 N -0.250 5.250 16 C -0.018 4.018 17 H 0.129 0.871 18 C -0.193 4.193 19 C -0.156 4.156 20 C -0.225 4.225 21 S -0.056 6.056 22 C -0.213 4.213 23 H 0.070 0.930 24 H 0.102 0.898 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.041 0.959 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.115 0.885 38 H 0.092 0.908 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.687 -8.540 3.885 10.488 hybrid contribution -1.487 0.653 0.703 1.769 sum 3.200 -7.888 4.588 9.670 Atomic orbital electron populations 1.69920 1.05867 1.26556 1.50725 1.24908 0.94817 0.99033 0.95184 0.86600 0.79920 0.83401 0.78180 1.20680 1.21397 1.19750 1.21137 0.93238 0.89700 1.50313 0.91857 1.19204 0.89124 0.87030 0.93211 0.97643 1.21604 0.98806 0.94611 0.99019 1.21681 0.97530 0.97124 0.99702 1.21537 0.97970 0.97414 0.97977 1.22040 0.95967 0.93151 0.96443 1.62251 1.23705 1.02266 1.36776 1.21831 0.92041 0.99899 0.88040 0.87148 1.22150 1.00978 1.00730 0.95491 1.21674 0.96171 0.99327 0.98405 1.23413 0.98613 1.02496 0.97962 1.86647 1.18820 1.96045 1.04092 1.23592 0.98603 1.01784 0.97290 0.93004 0.89786 0.93725 0.93413 0.93752 0.93358 0.91880 0.92599 0.95913 0.90119 0.93069 0.90291 0.91634 0.90512 0.88457 0.90788 0.87486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.71 11.73 55.43 0.65 -24.06 16 2 C 0.06 1.66 5.33 -17.82 -0.09 1.57 16 3 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.51 -13.23 7.58 -34.44 -0.26 -13.49 16 8 H 0.06 1.68 6.56 -52.48 -0.34 1.34 16 9 C 0.22 5.24 1.42 -68.87 -0.10 5.14 16 10 H 0.01 0.16 6.66 -51.93 -0.35 -0.19 16 11 C -0.10 -2.35 5.19 -26.65 -0.14 -2.49 16 12 C -0.12 -2.34 6.00 -26.61 -0.16 -2.50 16 13 C -0.11 -1.88 6.09 -26.65 -0.16 -2.05 16 14 C 0.05 0.93 4.56 -3.83 -0.02 0.91 16 15 N -0.53 -10.66 4.42 -220.33 -0.97 -11.63 16 16 C 0.09 1.71 1.80 -67.88 -0.12 1.59 16 17 H 0.11 2.39 5.80 -51.93 -0.30 2.09 16 18 C -0.15 -2.64 3.96 -27.16 -0.11 -2.75 16 19 C -0.12 -1.72 5.75 -26.88 -0.15 -1.87 16 20 C -0.08 -1.01 6.46 37.22 0.24 -0.77 16 21 S -0.28 -4.32 22.33 -107.50 -2.40 -6.72 16 22 C -0.06 -1.03 5.59 37.21 0.21 -0.82 16 23 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 24 H 0.08 2.16 6.53 -51.92 -0.34 1.82 16 25 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.06 0.88 6.31 -51.93 -0.33 0.56 16 31 H 0.02 0.41 6.80 -51.93 -0.35 0.06 16 32 H 0.08 1.61 6.40 -51.93 -0.33 1.28 16 33 H 0.05 0.82 7.02 -51.93 -0.36 0.45 16 34 H 0.08 1.28 8.05 -51.93 -0.42 0.86 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.07 1.11 6.61 -51.93 -0.34 0.77 16 39 H 0.11 1.76 8.14 -51.93 -0.42 1.34 16 LS Contribution 297.41 15.07 4.48 4.48 Total: -1.00 -26.48 297.41 -10.54 -37.03 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -6.41 Total: 2.47 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: -0.87 Total: -17.53 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: -0.32 Total: -35.69 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: -4.32 SS G_CDS: -2.40 Total: -6.72 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -26.48 -10.54 -37.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259801442.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.048 kcal (2) G-P(sol) polarization free energy of solvation -26.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds