Wall clock time and date at job start Mon Mar 30 2020 06:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00136 * 2 1 4 4 H 1.48496 * 109.47253 * 269.99958 * 3 2 1 5 5 H 1.48495 * 109.47182 * 30.00568 * 3 2 1 6 6 H 1.48508 * 109.47124 * 150.00486 * 3 2 1 7 7 C 1.37878 * 119.99558 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99610 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00302 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.45736 * 305.41976 * 9 7 2 11 11 C 1.53035 * 109.46503 * 65.39909 * 9 7 2 12 12 C 1.53113 * 109.28064 * 179.19691 * 11 9 7 13 13 C 1.53117 * 109.16206 * 302.34105 * 12 11 9 14 14 C 1.53037 * 109.27615 * 57.65557 * 13 12 11 15 15 N 1.46851 * 109.52316 * 300.81859 * 14 13 12 16 16 C 1.46897 * 110.99845 * 185.83985 * 15 14 13 17 17 H 1.09005 * 109.38632 * 186.33435 * 16 15 14 18 18 C 1.52580 * 109.39156 * 306.13769 * 16 15 14 19 19 C 1.52587 * 110.69290 * 190.84736 * 18 16 15 20 20 C 1.53118 * 109.94495 * 289.26314 * 19 18 16 21 21 S 1.81742 * 108.80636 * 63.08264 * 20 19 18 22 22 C 1.53098 * 109.38920 * 66.63367 * 16 15 14 23 23 H 0.97000 * 119.99765 * 359.97438 * 1 2 3 24 24 H 1.09008 * 109.49994 * 299.13551 * 11 9 7 25 25 H 1.09002 * 109.50672 * 59.21149 * 11 9 7 26 26 H 1.09001 * 109.52332 * 62.24789 * 12 11 9 27 27 H 1.09007 * 109.52579 * 182.43387 * 12 11 9 28 28 H 1.09001 * 109.50713 * 177.59750 * 13 12 11 29 29 H 1.09001 * 109.50163 * 297.71615 * 13 12 11 30 30 H 1.09005 * 109.45923 * 180.80912 * 14 13 12 31 31 H 1.08995 * 109.46515 * 60.84079 * 14 13 12 32 32 H 1.09005 * 109.22561 * 311.14681 * 18 16 15 33 33 H 1.08996 * 109.23045 * 70.54617 * 18 16 15 34 34 H 1.09004 * 109.38832 * 49.45392 * 19 18 16 35 35 H 1.09001 * 109.39002 * 169.14999 * 19 18 16 36 36 H 1.09001 * 109.60573 * 303.27580 * 20 19 18 37 37 H 1.08995 * 109.57321 * 182.87187 * 20 19 18 38 38 H 1.08994 * 109.57211 * 296.62833 * 22 16 15 39 39 H 1.08996 * 109.57578 * 57.01527 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.5539 -2.5159 0.8373 11 6 0.4752 -2.6401 -1.3122 12 6 -0.2726 -3.9762 -1.3162 13 6 0.7332 -5.1157 -1.1300 14 6 1.5014 -4.9030 0.1764 15 7 2.2000 -3.6121 0.1303 16 6 3.0587 -3.4359 1.3091 17 1 3.4755 -2.4287 1.3058 18 6 2.2299 -3.6371 2.5742 19 6 3.0153 -3.2027 3.8082 20 6 4.1500 -4.1940 4.0807 21 16 5.3042 -4.1638 2.6772 22 6 4.1994 -4.4560 1.2640 23 1 -0.4850 0.8401 0.0004 24 1 -0.2401 -1.8225 -1.4016 25 1 1.1703 -2.6089 -2.1513 26 1 -0.9955 -3.9915 -0.5005 27 1 -0.7918 -4.1003 -2.2666 28 1 0.2022 -6.0667 -1.0892 29 1 1.4324 -5.1241 -1.9661 30 1 2.2284 -5.7050 0.3048 31 1 0.8032 -4.9085 1.0133 32 1 1.3170 -3.0456 2.5032 33 1 1.9681 -4.6910 2.6681 34 1 3.4335 -2.2102 3.6401 35 1 2.3480 -3.1714 4.6695 36 1 3.7396 -5.1974 4.1946 37 1 4.6751 -3.9066 4.9916 38 1 3.7900 -5.4644 1.3229 39 1 4.7567 -4.3398 0.3345 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259801442.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:57 Heat of formation + Delta-G solvation = -28.357837 kcal Electronic energy + Delta-G solvation = -18331.959727 eV Core-core repulsion = 15785.005370 eV Total energy + Delta-G solvation = -2546.954356 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.50562 -37.09165 -34.88950 -33.86910 -31.48353 -30.43665 -28.05026 -27.15819 -24.98638 -23.26515 -22.81497 -21.37776 -19.88927 -18.38005 -17.82687 -16.78189 -16.36571 -15.89781 -15.65076 -15.12146 -15.03352 -14.68878 -14.54357 -14.20294 -14.09295 -13.71985 -13.63518 -13.09181 -12.85067 -12.61326 -12.42328 -12.37120 -12.24886 -11.96934 -11.84817 -11.76834 -11.57539 -11.41393 -10.91826 -10.75592 -10.56977 -10.37275 -8.87261 -8.59489 -8.11362 -6.20004 0.87517 1.39080 1.40979 1.50240 1.59595 2.41801 3.18383 3.41234 3.73572 3.85103 3.93784 4.11444 4.14705 4.26078 4.31470 4.37589 4.52853 4.54520 4.63827 4.68253 4.80422 4.85184 4.88836 4.99618 5.05085 5.08639 5.12599 5.24811 5.28189 5.34647 5.42777 5.47949 5.66126 5.75986 5.83322 6.28756 6.43531 6.81242 6.96405 7.48449 8.95269 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.016582 B = 0.009561 C = 0.006893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.183541 B = 2927.772565 C = 4061.128906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.017 3.983 3 Si 0.947 3.053 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.513 4.513 8 H 0.053 0.947 9 C 0.231 3.769 10 H -0.029 1.029 11 C -0.098 4.098 12 C -0.117 4.117 13 C -0.106 4.106 14 C 0.051 3.949 15 N -0.533 5.533 16 C 0.094 3.906 17 H 0.072 0.928 18 C -0.146 4.146 19 C -0.113 4.113 20 C -0.065 4.065 21 S -0.298 6.298 22 C -0.053 4.053 23 H 0.260 0.740 24 H 0.050 0.950 25 H 0.033 0.967 26 H 0.040 0.960 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.018 0.982 32 H 0.042 0.958 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.120 0.880 38 H 0.093 0.907 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.252 -10.743 5.002 12.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.182 4.182 3 Si 0.773 3.227 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.552 4.552 8 H 0.071 0.929 9 C 0.124 3.876 10 H -0.012 1.012 11 C -0.137 4.137 12 C -0.155 4.155 13 C -0.143 4.143 14 C -0.077 4.077 15 N -0.257 5.257 16 C -0.016 4.016 17 H 0.090 0.910 18 C -0.185 4.185 19 C -0.153 4.153 20 C -0.213 4.213 21 S -0.073 6.073 22 C -0.202 4.202 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.081 0.919 28 H 0.102 0.898 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.036 0.964 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.115 0.885 37 H 0.138 0.862 38 H 0.111 0.889 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.528 -10.479 4.586 12.704 hybrid contribution -1.740 1.255 0.516 2.207 sum 3.788 -9.224 5.102 11.201 Atomic orbital electron populations 1.70039 1.06986 1.27045 1.51748 1.25583 0.95529 1.01921 0.95193 0.85723 0.78826 0.79998 0.78152 1.20356 1.21044 1.19467 1.21392 0.92909 0.91252 1.49621 0.92883 1.18896 0.88897 0.87660 0.92170 1.01160 1.21442 0.98097 0.96112 0.98077 1.21600 0.97708 0.95683 1.00478 1.21534 0.97464 0.97840 0.97498 1.22170 0.96535 0.92181 0.96843 1.62192 1.23106 1.02449 1.37996 1.21721 0.92713 0.98937 0.88271 0.90968 1.22016 0.99403 1.01091 0.95974 1.21621 0.96921 0.98791 0.97946 1.23466 0.97336 1.02975 0.97482 1.86746 1.19492 1.96174 1.04839 1.23412 0.97505 1.01538 0.97738 0.93138 0.93143 0.94820 0.94124 0.91879 0.89805 0.91679 0.89804 0.96363 0.93877 0.91228 0.92381 0.89637 0.88459 0.86160 0.88896 0.88076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.81 11.73 21.45 0.25 -52.55 16 2 C 0.02 0.92 5.33 84.66 0.45 1.37 16 3 Si 0.95 44.13 29.54 68.60 2.03 46.15 16 4 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 5 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 7 C -0.51 -27.92 7.58 25.60 0.19 -27.73 16 8 H 0.05 2.94 6.56 -2.91 -0.02 2.92 16 9 C 0.23 11.36 1.42 44.19 0.06 11.43 16 10 H -0.03 -1.61 6.66 -2.39 -0.02 -1.63 16 11 C -0.10 -4.67 5.19 30.64 0.16 -4.51 16 12 C -0.12 -4.38 6.00 30.67 0.18 -4.20 16 13 C -0.11 -3.31 6.09 30.65 0.19 -3.12 16 14 C 0.05 1.69 4.56 86.33 0.39 2.08 16 15 N -0.53 -21.63 4.42 -851.00 -3.77 -25.39 16 16 C 0.09 3.49 1.80 44.81 0.08 3.57 16 17 H 0.07 3.24 5.80 -2.38 -0.01 3.22 16 18 C -0.15 -4.92 3.96 30.32 0.12 -4.80 16 19 C -0.11 -3.20 5.75 30.50 0.18 -3.02 16 20 C -0.06 -1.50 6.46 72.02 0.47 -1.04 16 21 S -0.30 -8.56 22.33 -56.49 -1.26 -9.82 16 22 C -0.05 -1.63 5.59 72.01 0.40 -1.22 16 23 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 24 H 0.05 2.70 6.53 -2.38 -0.02 2.69 16 25 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 28 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.08 2.34 6.31 -2.38 -0.02 2.33 16 31 H 0.02 0.63 6.80 -2.39 -0.02 0.61 16 32 H 0.04 1.78 6.40 -2.38 -0.02 1.76 16 33 H 0.07 2.07 7.02 -2.39 -0.02 2.06 16 34 H 0.06 1.88 8.05 -2.39 -0.02 1.86 16 35 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.09 2.47 6.61 -2.39 -0.02 2.46 16 39 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 Total: -1.00 -59.38 297.41 1.14 -58.24 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 1.01 Total: 14.58 kcal Atomic # 6 Polarization: -34.08 SS G_CDS: 2.88 Total: -31.21 kcal Atomic # 7 Polarization: -74.43 SS G_CDS: -3.51 Total: -77.95 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.26 Total: -9.82 kcal Total: -59.38 1.14 -58.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259801442.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.882 kcal (2) G-P(sol) polarization free energy of solvation -59.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds