Wall clock time and date at job start Mon Mar 30 2020 06:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00121 * 2 1 4 4 H 1.48498 * 109.47309 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47214 * 300.00385 * 3 2 1 6 6 H 1.48504 * 109.46921 * 60.00006 * 3 2 1 7 7 C 1.37879 * 119.99814 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99843 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00107 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.45774 * 59.98399 * 9 7 2 11 11 C 1.53034 * 109.46533 * 300.00586 * 9 7 2 12 12 C 1.53120 * 109.27663 * 180.80147 * 11 9 7 13 13 C 1.53120 * 109.15972 * 57.65936 * 12 11 9 14 14 C 1.53036 * 109.27700 * 302.34018 * 13 12 11 15 15 N 1.46850 * 109.52384 * 59.18090 * 14 13 12 16 16 C 1.46895 * 111.00333 * 174.16360 * 15 14 13 17 17 H 1.09000 * 109.39109 * 185.84825 * 16 15 14 18 18 C 1.52580 * 109.39373 * 66.04290 * 16 15 14 19 19 C 1.52584 * 110.72816 * 169.17780 * 18 16 15 20 20 C 1.53095 * 109.95419 * 70.67771 * 19 18 16 21 21 S 1.81750 * 108.84096 * 296.97418 * 20 19 18 22 22 C 1.53102 * 109.38869 * 305.54996 * 16 15 14 23 23 H 0.96998 * 120.00466 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.50225 * 60.86655 * 11 9 7 25 25 H 1.09002 * 109.53545 * 300.76253 * 11 9 7 26 26 H 1.08996 * 109.52935 * 297.74895 * 12 11 9 27 27 H 1.08999 * 109.57447 * 177.58775 * 12 11 9 28 28 H 1.08998 * 109.50426 * 182.40375 * 13 12 11 29 29 H 1.08992 * 109.50741 * 62.28338 * 13 12 11 30 30 H 1.08995 * 109.46942 * 179.19622 * 14 13 12 31 31 H 1.08998 * 109.46530 * 299.16948 * 14 13 12 32 32 H 1.08999 * 109.22754 * 289.50245 * 18 16 15 33 33 H 1.09001 * 109.22092 * 48.90252 * 18 16 15 34 34 H 1.09004 * 109.38892 * 190.82682 * 19 18 16 35 35 H 1.09005 * 109.38709 * 310.53134 * 19 18 16 36 36 H 1.08997 * 109.57551 * 56.78206 * 20 19 18 37 37 H 1.08997 * 109.57263 * 177.16573 * 20 19 18 38 38 H 1.09003 * 109.57575 * 302.98418 * 22 16 15 39 39 H 1.09006 * 109.57689 * 63.36737 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6239 -2.5564 -0.8902 11 6 0.3716 -2.5803 1.2493 12 6 -0.3766 -3.9162 1.2550 13 6 0.6388 -5.0612 1.2040 14 6 1.5105 -4.9082 -0.0445 15 7 2.2055 -3.6152 -0.0024 16 6 3.1568 -3.4924 -1.1149 17 1 3.7305 -2.5726 -1.0006 18 6 2.3913 -3.4513 -2.4341 19 6 3.3156 -3.0588 -3.5829 20 6 4.2902 -4.2007 -3.8828 21 16 5.3394 -4.4752 -2.4244 22 6 4.1114 -4.6893 -1.1018 23 1 -0.4851 0.8400 -0.0004 24 1 -0.3470 -1.7608 1.2424 25 1 0.9963 -2.5092 2.1397 26 1 -1.0313 -3.9709 0.3853 27 1 -0.9717 -3.9976 2.1646 28 1 0.1112 -6.0141 1.1648 29 1 1.2682 -5.0294 2.0933 30 1 2.2440 -5.7138 -0.0764 31 1 0.8822 -4.9539 -0.9340 32 1 1.9679 -4.4356 -2.6342 33 1 1.5845 -2.7223 -2.3582 34 1 2.7197 -2.8488 -4.4712 35 1 3.8775 -2.1666 -3.3065 36 1 3.7308 -5.1091 -4.1064 37 1 4.9135 -3.9341 -4.7363 38 1 4.6180 -4.7419 -0.1381 39 1 3.5485 -5.6073 -1.2712 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259801444.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:59 Heat of formation + Delta-G solvation = -10.345054 kcal Electronic energy + Delta-G solvation = -18366.815921 eV Core-core repulsion = 15820.642658 eV Total energy + Delta-G solvation = -2546.173263 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.97846 -35.60676 -32.97779 -32.48599 -29.77228 -28.86718 -26.76592 -25.24205 -23.51163 -21.61206 -21.33787 -19.88551 -18.25497 -16.74243 -16.15120 -15.07881 -14.88711 -14.32429 -14.28934 -13.63634 -13.54654 -13.18833 -13.09901 -12.77724 -12.43710 -12.33780 -12.12315 -11.44627 -11.03987 -10.98480 -10.92772 -10.74119 -10.62374 -10.50597 -10.25430 -10.10535 -9.98411 -9.56742 -9.45838 -9.25410 -8.71980 -8.40545 -7.45430 -7.13881 -6.03815 -4.08150 2.04494 2.76996 3.27982 3.36793 3.41642 4.39377 4.92493 5.02707 5.11545 5.18560 5.28612 5.39643 5.50747 5.60438 5.69465 5.73955 5.81069 5.88958 5.97589 6.00054 6.20930 6.32488 6.35223 6.41275 6.43005 6.55774 6.68691 6.74914 6.85085 6.88733 7.15844 7.26052 7.55434 7.70139 7.81917 8.16924 8.30582 8.57733 8.98902 9.57269 11.02353 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.016973 B = 0.009531 C = 0.006854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.291540 B = 2937.185731 C = 4084.459383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.503 4.503 8 H 0.063 0.937 9 C 0.220 3.780 10 H 0.004 0.996 11 C -0.106 4.106 12 C -0.123 4.123 13 C -0.111 4.111 14 C 0.050 3.950 15 N -0.525 5.525 16 C 0.098 3.902 17 H 0.104 0.896 18 C -0.158 4.158 19 C -0.115 4.115 20 C -0.077 4.077 21 S -0.282 6.282 22 C -0.070 4.070 23 H 0.259 0.741 24 H 0.093 0.907 25 H 0.043 0.957 26 H 0.046 0.954 27 H 0.043 0.957 28 H 0.047 0.953 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.021 0.979 32 H 0.048 0.952 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.559 -8.621 -4.034 10.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.541 4.541 8 H 0.082 0.918 9 C 0.114 3.886 10 H 0.022 0.978 11 C -0.144 4.144 12 C -0.160 4.160 13 C -0.149 4.149 14 C -0.078 4.078 15 N -0.249 5.249 16 C -0.012 4.012 17 H 0.122 0.878 18 C -0.197 4.197 19 C -0.155 4.155 20 C -0.225 4.225 21 S -0.056 6.056 22 C -0.218 4.218 23 H 0.069 0.931 24 H 0.112 0.888 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.039 0.961 32 H 0.066 0.934 33 H 0.110 0.890 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.115 0.885 38 H 0.125 0.875 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.799 -8.516 -3.519 10.390 hybrid contribution -1.435 0.840 -0.845 1.865 sum 3.364 -7.677 -4.364 9.450 Atomic orbital electron populations 1.69890 1.05846 1.26377 1.51012 1.24904 0.94822 0.99043 0.95231 0.86537 0.80294 0.83742 0.77484 1.19619 1.21204 1.21078 1.21201 0.93276 0.89690 1.49968 0.91848 1.19243 0.88903 0.87060 0.93420 0.97830 1.21658 0.99059 0.94961 0.98770 1.21685 0.97383 0.97194 0.99770 1.21538 0.97497 0.97486 0.98376 1.22075 0.95903 0.93264 0.96573 1.62345 1.19208 1.02228 1.41168 1.21757 0.93400 0.97329 0.88745 0.87844 1.22183 1.00356 1.01676 0.95510 1.21656 0.97198 0.97675 0.98939 1.23428 0.99983 1.01874 0.97206 1.86625 1.17823 1.95092 1.06063 1.23695 0.98081 1.01495 0.98532 0.93059 0.88836 0.93858 0.93510 0.93778 0.93398 0.91873 0.92326 0.96121 0.93377 0.89029 0.91589 0.90368 0.90520 0.88471 0.87545 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.54 11.33 55.43 0.63 -23.91 16 2 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 3 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.50 -13.09 7.90 -34.44 -0.27 -13.36 16 8 H 0.06 1.68 6.26 -52.49 -0.33 1.35 16 9 C 0.22 5.20 1.23 -68.87 -0.08 5.12 16 10 H 0.00 0.11 6.36 -51.93 -0.33 -0.22 16 11 C -0.11 -2.46 5.14 -26.65 -0.14 -2.60 16 12 C -0.12 -2.36 6.00 -26.61 -0.16 -2.52 16 13 C -0.11 -1.90 6.09 -26.65 -0.16 -2.06 16 14 C 0.05 0.89 4.69 -3.83 -0.02 0.87 16 15 N -0.52 -10.66 4.52 -220.34 -1.00 -11.66 16 16 C 0.10 1.81 1.76 -67.88 -0.12 1.69 16 17 H 0.10 2.20 6.10 -51.93 -0.32 1.88 16 18 C -0.16 -2.77 4.24 -27.16 -0.12 -2.89 16 19 C -0.12 -1.73 5.75 -26.90 -0.15 -1.88 16 20 C -0.08 -1.01 6.45 37.21 0.24 -0.77 16 21 S -0.28 -4.27 22.33 -107.50 -2.40 -6.68 16 22 C -0.07 -1.10 5.20 37.21 0.19 -0.91 16 23 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 24 H 0.09 2.42 6.10 -51.93 -0.32 2.11 16 25 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.06 0.92 5.94 -51.93 -0.31 0.62 16 31 H 0.02 0.38 6.99 -51.93 -0.36 0.01 16 32 H 0.05 0.80 7.13 -51.93 -0.37 0.43 16 33 H 0.09 1.91 5.88 -51.93 -0.31 1.60 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.08 1.27 8.06 -51.93 -0.42 0.85 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.11 1.70 8.14 -51.93 -0.42 1.28 16 39 H 0.08 1.14 6.41 -51.92 -0.33 0.81 16 LS Contribution 295.62 15.07 4.45 4.45 Total: -1.00 -26.33 295.62 -10.55 -36.88 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -6.33 Total: 2.79 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: -0.88 Total: -17.77 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: -0.37 Total: -35.56 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: -4.27 SS G_CDS: -2.40 Total: -6.68 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -26.33 -10.55 -36.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259801444.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.532 kcal (2) G-P(sol) polarization free energy of solvation -26.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds