Wall clock time and date at job start Mon Mar 30 2020 06:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00121 * 2 1 4 4 H 1.48498 * 109.47309 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47214 * 300.00385 * 3 2 1 6 6 H 1.48504 * 109.46921 * 60.00006 * 3 2 1 7 7 C 1.37879 * 119.99814 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99843 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00107 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.45774 * 59.98399 * 9 7 2 11 11 C 1.53034 * 109.46533 * 300.00586 * 9 7 2 12 12 C 1.53120 * 109.27663 * 180.80147 * 11 9 7 13 13 C 1.53120 * 109.15972 * 57.65936 * 12 11 9 14 14 C 1.53036 * 109.27700 * 302.34018 * 13 12 11 15 15 N 1.46850 * 109.52384 * 59.18090 * 14 13 12 16 16 C 1.46895 * 111.00333 * 174.16360 * 15 14 13 17 17 H 1.09000 * 109.39109 * 185.84825 * 16 15 14 18 18 C 1.52580 * 109.39373 * 66.04290 * 16 15 14 19 19 C 1.52584 * 110.72816 * 169.17780 * 18 16 15 20 20 C 1.53095 * 109.95419 * 70.67771 * 19 18 16 21 21 S 1.81750 * 108.84096 * 296.97418 * 20 19 18 22 22 C 1.53102 * 109.38869 * 305.54996 * 16 15 14 23 23 H 0.96998 * 120.00466 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.50225 * 60.86655 * 11 9 7 25 25 H 1.09002 * 109.53545 * 300.76253 * 11 9 7 26 26 H 1.08996 * 109.52935 * 297.74895 * 12 11 9 27 27 H 1.08999 * 109.57447 * 177.58775 * 12 11 9 28 28 H 1.08998 * 109.50426 * 182.40375 * 13 12 11 29 29 H 1.08992 * 109.50741 * 62.28338 * 13 12 11 30 30 H 1.08995 * 109.46942 * 179.19622 * 14 13 12 31 31 H 1.08998 * 109.46530 * 299.16948 * 14 13 12 32 32 H 1.08999 * 109.22754 * 289.50245 * 18 16 15 33 33 H 1.09001 * 109.22092 * 48.90252 * 18 16 15 34 34 H 1.09004 * 109.38892 * 190.82682 * 19 18 16 35 35 H 1.09005 * 109.38709 * 310.53134 * 19 18 16 36 36 H 1.08997 * 109.57551 * 56.78206 * 20 19 18 37 37 H 1.08997 * 109.57263 * 177.16573 * 20 19 18 38 38 H 1.09003 * 109.57575 * 302.98418 * 22 16 15 39 39 H 1.09006 * 109.57689 * 63.36737 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6239 -2.5564 -0.8902 11 6 0.3716 -2.5803 1.2493 12 6 -0.3766 -3.9162 1.2550 13 6 0.6388 -5.0612 1.2040 14 6 1.5105 -4.9082 -0.0445 15 7 2.2055 -3.6152 -0.0024 16 6 3.1568 -3.4924 -1.1149 17 1 3.7305 -2.5726 -1.0006 18 6 2.3913 -3.4513 -2.4341 19 6 3.3156 -3.0588 -3.5829 20 6 4.2902 -4.2007 -3.8828 21 16 5.3394 -4.4752 -2.4244 22 6 4.1114 -4.6893 -1.1018 23 1 -0.4851 0.8400 -0.0004 24 1 -0.3470 -1.7608 1.2424 25 1 0.9963 -2.5092 2.1397 26 1 -1.0313 -3.9709 0.3853 27 1 -0.9717 -3.9976 2.1646 28 1 0.1112 -6.0141 1.1648 29 1 1.2682 -5.0294 2.0933 30 1 2.2440 -5.7138 -0.0764 31 1 0.8822 -4.9539 -0.9340 32 1 1.9679 -4.4356 -2.6342 33 1 1.5845 -2.7223 -2.3582 34 1 2.7197 -2.8488 -4.4712 35 1 3.8775 -2.1666 -3.3065 36 1 3.7308 -5.1091 -4.1064 37 1 4.9135 -3.9341 -4.7363 38 1 4.6180 -4.7419 -0.1381 39 1 3.5485 -5.6073 -1.2712 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259801444.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:58 Heat of formation + Delta-G solvation = -24.603672 kcal Electronic energy + Delta-G solvation = -18367.434221 eV Core-core repulsion = 15820.642658 eV Total energy + Delta-G solvation = -2546.791563 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.55117 -37.06388 -34.91833 -33.88185 -31.52141 -30.34048 -28.05128 -27.16706 -25.03463 -23.10358 -22.87516 -21.45209 -19.87241 -18.35499 -17.85137 -16.75237 -16.36064 -15.88300 -15.65099 -15.23390 -15.07817 -14.63634 -14.52389 -14.18733 -14.06672 -13.70800 -13.68188 -13.03736 -12.86106 -12.60425 -12.43466 -12.35870 -12.20766 -11.97993 -11.88564 -11.72937 -11.58785 -11.34499 -10.93461 -10.72386 -10.53681 -10.36898 -8.83844 -8.61046 -8.09128 -6.19068 0.86472 1.37640 1.41335 1.51771 1.58238 2.42077 3.18124 3.42905 3.72746 3.86184 3.92845 4.11096 4.15351 4.25200 4.30167 4.38549 4.51734 4.54980 4.62041 4.69991 4.79773 4.85469 4.88904 5.01180 5.05851 5.09695 5.12125 5.25414 5.28548 5.38426 5.44686 5.50217 5.67898 5.79711 5.85092 6.32670 6.45797 6.81394 6.96468 7.49543 8.95823 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.016973 B = 0.009531 C = 0.006854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.291540 B = 2937.185731 C = 4084.459383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.016 3.984 3 Si 0.947 3.053 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.511 4.511 8 H 0.053 0.947 9 C 0.230 3.770 10 H -0.027 1.027 11 C -0.103 4.103 12 C -0.117 4.117 13 C -0.106 4.106 14 C 0.049 3.951 15 N -0.534 5.534 16 C 0.100 3.900 17 H 0.069 0.931 18 C -0.149 4.149 19 C -0.112 4.112 20 C -0.066 4.066 21 S -0.294 6.294 22 C -0.060 4.060 23 H 0.259 0.741 24 H 0.061 0.939 25 H 0.029 0.971 26 H 0.040 0.960 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.017 0.983 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.082 0.918 35 H 0.060 0.940 36 H 0.095 0.905 37 H 0.121 0.879 38 H 0.105 0.895 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.377 -10.454 -4.694 12.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.182 4.182 3 Si 0.773 3.227 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.549 4.549 8 H 0.071 0.929 9 C 0.123 3.877 10 H -0.009 1.009 11 C -0.142 4.142 12 C -0.155 4.155 13 C -0.144 4.144 14 C -0.079 4.079 15 N -0.259 5.259 16 C -0.010 4.010 17 H 0.087 0.913 18 C -0.188 4.188 19 C -0.152 4.152 20 C -0.214 4.214 21 S -0.068 6.068 22 C -0.208 4.208 23 H 0.068 0.932 24 H 0.079 0.921 25 H 0.048 0.952 26 H 0.059 0.941 27 H 0.080 0.920 28 H 0.102 0.898 29 H 0.082 0.918 30 H 0.105 0.895 31 H 0.035 0.965 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.101 0.899 35 H 0.078 0.922 36 H 0.113 0.887 37 H 0.139 0.861 38 H 0.123 0.877 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.631 -10.362 -4.182 12.513 hybrid contribution -1.684 1.418 -0.664 2.299 sum 3.948 -8.944 -4.846 10.912 Atomic orbital electron populations 1.70014 1.06912 1.26874 1.51931 1.25567 0.95534 1.01862 0.95255 0.85671 0.79170 0.80380 0.77448 1.19436 1.20811 1.20852 1.21438 0.92915 0.91227 1.49328 0.92925 1.18936 0.88917 0.87625 0.92190 1.00945 1.21496 0.98403 0.96496 0.97801 1.21602 0.97715 0.95787 1.00376 1.21534 0.96905 0.97933 0.97985 1.22203 0.96556 0.92323 0.96829 1.62257 1.18772 1.02505 1.42325 1.21648 0.93267 0.97334 0.88750 0.91314 1.22030 0.99543 1.01116 0.96139 1.21600 0.97204 0.97870 0.98479 1.23468 0.99515 1.01660 0.96729 1.86713 1.18190 1.95102 1.06779 1.23529 0.97661 1.00456 0.99143 0.93158 0.92087 0.95243 0.94103 0.92038 0.89846 0.91778 0.89523 0.96523 0.91988 0.93146 0.89907 0.92151 0.88692 0.86127 0.87698 0.88788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.25 11.33 21.45 0.24 -52.01 16 2 C 0.02 0.90 5.30 84.65 0.45 1.35 16 3 Si 0.95 43.94 29.54 68.60 2.03 45.97 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 6 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 7 C -0.51 -27.59 7.90 25.60 0.20 -27.39 16 8 H 0.05 2.90 6.26 -2.91 -0.02 2.88 16 9 C 0.23 11.27 1.23 44.19 0.05 11.32 16 10 H -0.03 -1.46 6.36 -2.39 -0.02 -1.48 16 11 C -0.10 -4.93 5.14 30.65 0.16 -4.77 16 12 C -0.12 -4.42 6.00 30.67 0.18 -4.24 16 13 C -0.11 -3.35 6.09 30.65 0.19 -3.16 16 14 C 0.05 1.63 4.69 86.32 0.40 2.04 16 15 N -0.53 -21.69 4.52 -851.02 -3.85 -25.54 16 16 C 0.10 3.70 1.76 44.81 0.08 3.78 16 17 H 0.07 3.01 6.10 -2.39 -0.01 3.00 16 18 C -0.15 -5.20 4.24 30.32 0.13 -5.07 16 19 C -0.11 -3.23 5.75 30.49 0.18 -3.05 16 20 C -0.07 -1.55 6.45 72.01 0.46 -1.08 16 21 S -0.29 -8.28 22.33 -56.49 -1.26 -9.54 16 22 C -0.06 -1.78 5.20 72.02 0.37 -1.40 16 23 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 24 H 0.06 3.29 6.10 -2.39 -0.01 3.28 16 25 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.09 2.42 5.94 -2.39 -0.01 2.41 16 31 H 0.02 0.57 6.99 -2.39 -0.02 0.56 16 32 H 0.06 1.96 7.13 -2.39 -0.02 1.94 16 33 H 0.05 2.18 5.88 -2.39 -0.01 2.17 16 34 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.06 1.95 8.06 -2.38 -0.02 1.93 16 36 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 39 H 0.09 2.48 6.41 -2.38 -0.02 2.47 16 Total: -1.00 -58.69 295.62 1.04 -57.65 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 1.02 Total: 15.14 kcal Atomic # 6 Polarization: -34.53 SS G_CDS: 2.86 Total: -31.67 kcal Atomic # 7 Polarization: -73.94 SS G_CDS: -3.60 Total: -77.55 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: -8.28 SS G_CDS: -1.26 Total: -9.54 kcal Total: -58.69 1.04 -57.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259801444.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.049 kcal (2) G-P(sol) polarization free energy of solvation -58.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds