Wall clock time and date at job start Mon Mar 30 2020 06:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46577 * 111.15654 * 2 1 4 4 C 1.51800 * 111.52347 * 175.98302 * 3 2 1 5 5 C 1.52323 * 114.87085 * 47.24821 * 4 3 2 6 6 C 1.52120 * 112.71426 * 320.82784 * 5 4 3 7 7 C 1.46886 * 110.95931 * 236.92566 * 2 1 3 8 8 C 1.55340 * 106.13657 * 204.70082 * 5 4 3 9 9 S 1.81732 * 107.80563 * 174.91386 * 8 5 4 10 10 C 1.81867 * 101.83546 * 57.32198 * 9 8 5 11 11 C 1.53093 * 108.66871 * 305.81898 * 10 9 8 12 12 C 1.52041 * 111.48709 * 88.41853 * 5 4 3 13 13 H 1.10297 * 107.77595 * 68.76608 * 12 5 4 14 14 C 1.50276 * 111.96758 * 310.54868 * 12 5 4 15 15 H 1.07998 * 119.99654 * 290.28114 * 14 12 5 16 16 C 1.37870 * 119.99827 * 110.27401 * 14 12 5 17 17 N 1.31512 * 120.00280 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99887 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47062 * 0.02562 * 18 16 14 20 20 H 1.48493 * 109.47353 * 120.00194 * 18 16 14 21 21 H 1.48505 * 109.47182 * 240.00131 * 18 16 14 22 22 H 1.08996 * 109.47275 * 59.99712 * 1 2 3 23 23 H 1.08996 * 109.47126 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47305 * 300.00260 * 1 2 3 25 25 H 1.10119 * 108.05323 * 56.47806 * 3 2 1 26 26 H 1.08801 * 109.81653 * 299.93283 * 3 2 1 27 27 H 1.10188 * 108.69904 * 285.51159 * 4 3 2 28 28 H 1.09956 * 109.14118 * 169.91782 * 4 3 2 29 29 H 1.09076 * 110.73515 * 167.27029 * 6 5 4 30 30 H 1.10241 * 108.53088 * 284.20564 * 6 5 4 31 31 H 1.09426 * 108.84821 * 308.14471 * 7 2 1 32 32 H 1.08581 * 110.05977 * 67.27665 * 7 2 1 33 33 H 1.08464 * 108.79426 * 55.50141 * 8 5 4 34 34 H 1.08476 * 108.76054 * 294.30419 * 8 5 4 35 35 H 1.08970 * 109.52744 * 186.10652 * 10 9 8 36 36 H 1.08919 * 109.57892 * 65.67450 * 10 9 8 37 37 H 1.08480 * 110.17570 * 297.94661 * 11 10 9 38 38 H 1.09652 * 108.55057 * 179.47189 * 11 10 9 39 39 H 0.97003 * 120.00214 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9981 1.3670 0.0000 4 6 3.5128 1.3780 0.0989 5 6 4.2236 0.4191 -0.8475 6 6 3.5008 -0.9121 -0.9870 7 6 1.9945 -0.7486 -1.1494 8 6 5.5977 0.1067 -0.1939 9 16 6.4232 -1.1532 -1.2107 10 6 6.4760 -0.3432 -2.8382 11 6 5.0565 0.0867 -3.2179 12 6 4.5059 1.0707 -2.1919 13 1 5.2712 1.8492 -2.0347 14 6 3.2857 1.7391 -2.7600 15 1 2.4574 1.1419 -3.1117 16 6 3.2237 3.1145 -2.8319 17 7 4.2325 3.8416 -2.4040 18 14 1.7066 3.9453 -3.5374 19 1 0.7207 2.9122 -3.9446 20 1 1.1015 4.8277 -2.5077 21 1 2.0914 4.7566 -4.7203 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.5820 1.8939 0.8728 26 1 1.6549 1.8953 -0.8870 27 1 3.8012 1.1269 1.1324 28 1 3.8788 2.3983 -0.0853 29 1 3.9002 -1.4822 -1.8268 30 1 3.6875 -1.5089 -0.0791 31 1 1.5236 -1.7360 -1.1733 32 1 1.7598 -0.2269 -2.0723 33 1 5.4298 -0.2734 0.8080 34 1 6.1891 1.0159 -0.1734 35 1 6.8572 -1.0432 -3.5812 36 1 7.1238 0.5311 -2.7899 37 1 4.4119 -0.7820 -3.2998 38 1 5.0920 0.5831 -4.1949 39 1 4.1890 4.8093 -2.4549 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259833362.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:02 Heat of formation + Delta-G solvation = -8.656236 kcal Electronic energy + Delta-G solvation = -18847.719253 eV Core-core repulsion = 16301.619222 eV Total energy + Delta-G solvation = -2546.100031 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.04343 -35.73605 -32.60374 -31.93169 -30.03988 -28.25017 -27.35567 -24.37937 -23.42392 -22.62812 -21.40763 -20.03723 -17.35683 -16.56224 -15.87135 -15.10341 -14.54795 -14.42729 -13.91815 -13.74026 -13.41849 -13.20922 -13.06249 -12.40399 -12.03686 -11.93541 -11.67847 -11.57453 -11.52892 -11.09226 -10.96534 -10.85424 -10.55437 -10.17934 -10.17455 -10.01153 -9.73835 -9.44645 -9.20902 -8.72387 -8.58948 -8.51064 -7.61097 -6.97242 -6.10034 -4.09450 2.50749 3.19610 3.20155 3.29934 3.32134 4.33800 4.65986 5.18836 5.43392 5.51515 5.61352 5.69657 5.79802 5.82701 5.89130 5.96282 6.13532 6.16072 6.17969 6.24292 6.27203 6.42267 6.54548 6.58890 6.62476 6.64669 6.78267 6.90304 6.93547 7.05633 7.18062 7.30991 7.69191 7.70363 7.77216 7.83136 7.85270 8.37846 9.00090 9.51468 10.98685 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.017684 B = 0.011729 C = 0.008341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.010814 B = 2386.746582 C = 3355.957755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.540 5.540 3 C 0.071 3.929 4 C -0.074 4.074 5 C -0.026 4.026 6 C -0.090 4.090 7 C 0.058 3.942 8 C -0.070 4.070 9 S -0.308 6.308 10 C -0.070 4.070 11 C -0.110 4.110 12 C 0.029 3.971 13 H 0.067 0.933 14 C -0.491 4.491 15 H 0.052 0.948 16 C 0.070 3.930 17 N -0.892 5.892 18 Si 0.876 3.124 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.284 1.284 22 H 0.021 0.979 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.044 0.956 26 H 0.052 0.948 27 H 0.032 0.968 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.045 0.955 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.306 -5.954 2.694 6.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.264 5.264 3 C -0.057 4.057 4 C -0.113 4.113 5 C -0.028 4.028 6 C -0.128 4.128 7 C -0.070 4.070 8 C -0.218 4.218 9 S -0.080 6.080 10 C -0.218 4.218 11 C -0.149 4.149 12 C 0.011 3.989 13 H 0.085 0.915 14 C -0.529 4.529 15 H 0.070 0.930 16 C -0.132 4.132 17 N -0.531 5.531 18 Si 0.704 3.296 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.210 1.210 22 H 0.039 0.961 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.051 0.949 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.649 -7.015 3.455 7.846 hybrid contribution -1.527 2.196 -1.406 3.022 sum -2.176 -4.818 2.049 5.670 Atomic orbital electron populations 1.22305 0.89073 1.00919 1.00034 1.62318 1.06129 1.15462 1.42531 1.21748 0.95701 0.87999 1.00246 1.21036 0.93300 1.00859 0.96153 1.20637 0.90509 0.94337 0.97326 1.21402 0.93087 0.96678 1.01586 1.21979 0.96043 0.96524 0.92428 1.24302 1.00002 0.98241 0.99295 1.86261 1.79056 1.32115 1.10610 1.23520 1.02507 1.01785 0.94006 1.21928 0.91637 0.99997 1.01309 1.18858 0.98418 0.93314 0.88341 0.91490 1.20828 1.01789 0.90693 1.39635 0.92982 1.24852 0.95610 0.97660 0.95057 1.69855 1.30289 1.05504 1.47456 0.86788 0.83854 0.79838 0.79077 1.19863 1.20992 1.21029 0.96086 0.92223 0.92235 0.93782 0.92938 0.94935 0.90361 0.90894 0.93629 0.93127 0.93177 0.89397 0.90402 0.89724 0.90603 0.92424 0.92091 0.92977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.58 60.07 0.58 0.97 16 2 N -0.54 -9.78 4.96 -243.93 -1.21 -10.99 16 3 C 0.07 1.39 4.95 -4.61 -0.02 1.37 16 4 C -0.07 -1.50 4.36 -27.69 -0.12 -1.62 16 5 C -0.03 -0.51 0.37 -154.55 -0.06 -0.57 16 6 C -0.09 -1.67 3.74 -27.49 -0.10 -1.77 16 7 C 0.06 1.06 5.21 -4.14 -0.02 1.04 16 8 C -0.07 -1.29 4.83 38.40 0.19 -1.11 16 9 S -0.31 -5.48 20.68 -107.50 -2.22 -7.70 16 10 C -0.07 -1.24 6.47 37.21 0.24 -1.00 16 11 C -0.11 -2.18 4.74 -26.96 -0.13 -2.31 16 12 C 0.03 0.65 1.28 -92.74 -0.12 0.53 16 13 H 0.07 1.70 6.43 -51.19 -0.33 1.37 16 14 C -0.49 -11.91 5.10 -34.65 -0.18 -12.09 16 15 H 0.05 1.30 6.05 -52.49 -0.32 0.98 16 16 C 0.07 1.76 5.26 -17.82 -0.09 1.67 16 17 N -0.89 -23.72 12.53 55.43 0.69 -23.02 16 18 Si 0.88 20.20 29.54 -169.99 -5.02 15.18 16 19 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 23 H 0.06 0.81 8.07 -51.93 -0.42 0.39 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.04 0.81 8.21 -51.29 -0.42 0.39 16 26 H 0.05 1.16 6.56 -52.04 -0.34 0.82 16 27 H 0.03 0.61 7.58 -51.25 -0.39 0.22 16 28 H 0.08 1.79 7.99 -51.39 -0.41 1.38 16 29 H 0.07 1.37 4.97 -51.89 -0.26 1.11 16 30 H 0.04 0.84 7.90 -51.22 -0.40 0.44 16 31 H 0.05 0.84 8.07 -51.69 -0.42 0.42 16 32 H 0.05 1.02 5.88 -52.16 -0.31 0.71 16 33 H 0.09 1.53 7.72 -52.23 -0.40 1.12 16 34 H 0.08 1.49 7.83 -52.22 -0.41 1.08 16 35 H 0.08 1.33 8.14 -51.94 -0.42 0.90 16 36 H 0.08 1.37 8.14 -51.97 -0.42 0.95 16 37 H 0.06 1.12 6.06 -52.22 -0.32 0.80 16 38 H 0.06 1.26 8.07 -51.56 -0.42 0.85 16 39 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 293.17 15.07 4.42 4.42 Total: -1.00 -25.07 293.17 -9.57 -34.64 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -6.38 Total: 2.36 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: 0.16 Total: -14.88 kcal Atomic # 7 Polarization: -33.49 SS G_CDS: -0.52 Total: -34.01 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: -5.48 SS G_CDS: -2.22 Total: -7.70 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -25.07 -9.57 -34.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259833362.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.981 kcal (2) G-P(sol) polarization free energy of solvation -25.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds