Wall clock time and date at job start Mon Mar 30 2020 06:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46577 * 111.15654 * 2 1 4 4 C 1.51800 * 111.52347 * 175.98302 * 3 2 1 5 5 C 1.52323 * 114.87085 * 47.24821 * 4 3 2 6 6 C 1.52120 * 112.71426 * 320.82784 * 5 4 3 7 7 C 1.46886 * 110.95931 * 236.92566 * 2 1 3 8 8 C 1.55340 * 106.13657 * 204.70082 * 5 4 3 9 9 S 1.81732 * 107.80563 * 174.91386 * 8 5 4 10 10 C 1.81867 * 101.83546 * 57.32198 * 9 8 5 11 11 C 1.53093 * 108.66871 * 305.81898 * 10 9 8 12 12 C 1.52041 * 111.48709 * 88.41853 * 5 4 3 13 13 H 1.10297 * 107.77595 * 68.76608 * 12 5 4 14 14 C 1.50276 * 111.96758 * 310.54868 * 12 5 4 15 15 H 1.07998 * 119.99654 * 290.28114 * 14 12 5 16 16 C 1.37870 * 119.99827 * 110.27401 * 14 12 5 17 17 N 1.31512 * 120.00280 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99887 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47062 * 0.02562 * 18 16 14 20 20 H 1.48493 * 109.47353 * 120.00194 * 18 16 14 21 21 H 1.48505 * 109.47182 * 240.00131 * 18 16 14 22 22 H 1.08996 * 109.47275 * 59.99712 * 1 2 3 23 23 H 1.08996 * 109.47126 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47305 * 300.00260 * 1 2 3 25 25 H 1.10119 * 108.05323 * 56.47806 * 3 2 1 26 26 H 1.08801 * 109.81653 * 299.93283 * 3 2 1 27 27 H 1.10188 * 108.69904 * 285.51159 * 4 3 2 28 28 H 1.09956 * 109.14118 * 169.91782 * 4 3 2 29 29 H 1.09076 * 110.73515 * 167.27029 * 6 5 4 30 30 H 1.10241 * 108.53088 * 284.20564 * 6 5 4 31 31 H 1.09426 * 108.84821 * 308.14471 * 7 2 1 32 32 H 1.08581 * 110.05977 * 67.27665 * 7 2 1 33 33 H 1.08464 * 108.79426 * 55.50141 * 8 5 4 34 34 H 1.08476 * 108.76054 * 294.30419 * 8 5 4 35 35 H 1.08970 * 109.52744 * 186.10652 * 10 9 8 36 36 H 1.08919 * 109.57892 * 65.67450 * 10 9 8 37 37 H 1.08480 * 110.17570 * 297.94661 * 11 10 9 38 38 H 1.09652 * 108.55057 * 179.47189 * 11 10 9 39 39 H 0.97003 * 120.00214 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9981 1.3670 0.0000 4 6 3.5128 1.3780 0.0989 5 6 4.2236 0.4191 -0.8475 6 6 3.5008 -0.9121 -0.9870 7 6 1.9945 -0.7486 -1.1494 8 6 5.5977 0.1067 -0.1939 9 16 6.4232 -1.1532 -1.2107 10 6 6.4760 -0.3432 -2.8382 11 6 5.0565 0.0867 -3.2179 12 6 4.5059 1.0707 -2.1919 13 1 5.2712 1.8492 -2.0347 14 6 3.2857 1.7391 -2.7600 15 1 2.4574 1.1419 -3.1117 16 6 3.2237 3.1145 -2.8319 17 7 4.2325 3.8416 -2.4040 18 14 1.7066 3.9453 -3.5374 19 1 0.7207 2.9122 -3.9446 20 1 1.1015 4.8277 -2.5077 21 1 2.0914 4.7566 -4.7203 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.5820 1.8939 0.8728 26 1 1.6549 1.8953 -0.8870 27 1 3.8012 1.1269 1.1324 28 1 3.8788 2.3983 -0.0853 29 1 3.9002 -1.4822 -1.8268 30 1 3.6875 -1.5089 -0.0791 31 1 1.5236 -1.7360 -1.1733 32 1 1.7598 -0.2269 -2.0723 33 1 5.4298 -0.2734 0.8080 34 1 6.1891 1.0159 -0.1734 35 1 6.8572 -1.0432 -3.5812 36 1 7.1238 0.5311 -2.7899 37 1 4.4119 -0.7820 -3.2998 38 1 5.0920 0.5831 -4.1949 39 1 4.1890 4.8093 -2.4549 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259833362.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:02 Heat of formation + Delta-G solvation = -21.797816 kcal Electronic energy + Delta-G solvation = -18848.289115 eV Core-core repulsion = 16301.619222 eV Total energy + Delta-G solvation = -2546.669892 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.62121 -37.26846 -34.46035 -33.52687 -31.58437 -29.70534 -29.11658 -25.84658 -25.12562 -24.19494 -22.94295 -21.64818 -18.99251 -18.46077 -17.38092 -16.58674 -16.39872 -15.90533 -15.47445 -15.19223 -15.06308 -14.72645 -14.60752 -13.95856 -13.77586 -13.49617 -13.16025 -13.05511 -12.98883 -12.89054 -12.64425 -12.45392 -12.36844 -11.75949 -11.72085 -11.55455 -11.33446 -11.16691 -10.91569 -10.49607 -10.37787 -10.20308 -9.10683 -8.42514 -8.05878 -6.08036 1.05201 1.32192 1.38890 1.44543 1.72147 2.41804 3.21872 3.25918 3.89338 4.00733 4.12816 4.24313 4.32717 4.42668 4.49508 4.57853 4.61950 4.62661 4.70988 4.80721 4.89800 4.98923 5.00581 5.01956 5.05649 5.08115 5.19408 5.27986 5.33021 5.46650 5.56054 5.65878 5.79889 5.91648 6.08123 6.29766 6.35883 6.46911 7.06803 7.53777 9.01788 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.017684 B = 0.011729 C = 0.008341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.010814 B = 2386.746582 C = 3355.957755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.539 5.539 3 C 0.075 3.925 4 C -0.071 4.071 5 C -0.025 4.025 6 C -0.083 4.083 7 C 0.059 3.941 8 C -0.070 4.070 9 S -0.285 6.285 10 C -0.068 4.068 11 C -0.105 4.105 12 C 0.034 3.966 13 H 0.030 0.970 14 C -0.481 4.481 15 H 0.045 0.955 16 C 0.030 3.970 17 N -0.921 5.921 18 Si 0.920 3.080 19 H -0.271 1.271 20 H -0.286 1.286 21 H -0.287 1.287 22 H 0.011 0.989 23 H 0.082 0.918 24 H 0.073 0.927 25 H 0.055 0.945 26 H 0.022 0.978 27 H 0.047 0.953 28 H 0.044 0.956 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.026 0.974 33 H 0.103 0.897 34 H 0.063 0.937 35 H 0.111 0.889 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.046 0.954 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.871 -7.924 3.252 8.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.263 5.263 3 C -0.053 4.053 4 C -0.110 4.110 5 C -0.028 4.028 6 C -0.121 4.121 7 C -0.069 4.069 8 C -0.218 4.218 9 S -0.057 6.057 10 C -0.216 4.216 11 C -0.144 4.144 12 C 0.015 3.985 13 H 0.048 0.952 14 C -0.519 4.519 15 H 0.063 0.937 16 C -0.168 4.168 17 N -0.562 5.562 18 Si 0.748 3.252 19 H -0.196 1.196 20 H -0.212 1.212 21 H -0.213 1.213 22 H 0.029 0.971 23 H 0.101 0.899 24 H 0.092 0.908 25 H 0.073 0.927 26 H 0.041 0.959 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.044 0.956 33 H 0.122 0.878 34 H 0.082 0.918 35 H 0.130 0.870 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.226 -8.998 4.009 9.927 hybrid contribution -1.363 2.774 -1.573 3.468 sum -2.589 -6.224 2.435 7.167 Atomic orbital electron populations 1.22414 0.87197 1.02547 1.00269 1.62348 1.07852 1.13996 1.42139 1.21617 0.95357 0.89049 0.99301 1.20976 0.93840 0.99091 0.97124 1.20512 0.91617 0.94810 0.95830 1.21325 0.93209 0.95599 1.01984 1.21969 0.96083 0.97438 0.91425 1.24224 0.99023 0.98282 1.00301 1.86174 1.78760 1.30960 1.09837 1.23469 1.00776 1.02310 0.95094 1.21784 0.93259 0.99503 0.99822 1.18784 0.96439 0.93108 0.90188 0.95206 1.20992 1.02035 0.90603 1.38314 0.93714 1.25317 0.97215 0.98373 0.95858 1.69971 1.31679 1.05300 1.49216 0.86101 0.81865 0.79014 0.78264 1.19571 1.21183 1.21305 0.97054 0.89902 0.90818 0.92658 0.95947 0.93395 0.93768 0.90784 0.92730 0.90634 0.95599 0.87836 0.91800 0.87027 0.91391 0.91600 0.93533 0.93416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.68 9.58 127.69 1.22 1.90 16 2 N -0.54 -18.37 4.96 -925.64 -4.59 -22.96 16 3 C 0.07 2.91 4.95 85.97 0.43 3.33 16 4 C -0.07 -2.86 4.36 29.98 0.13 -2.73 16 5 C -0.03 -0.99 0.37 -52.21 -0.02 -1.01 16 6 C -0.08 -2.92 3.74 30.10 0.11 -2.80 16 7 C 0.06 2.02 5.21 86.10 0.45 2.47 16 8 C -0.07 -2.50 4.83 72.79 0.35 -2.14 16 9 S -0.28 -9.49 20.68 -56.49 -1.17 -10.66 16 10 C -0.07 -2.32 6.47 72.01 0.47 -1.85 16 11 C -0.10 -4.09 4.74 30.44 0.14 -3.95 16 12 C 0.03 1.50 1.28 -12.17 -0.02 1.48 16 13 H 0.03 1.55 6.43 -1.69 -0.01 1.54 16 14 C -0.48 -23.68 5.10 25.47 0.13 -23.55 16 15 H 0.04 2.25 6.05 -2.91 -0.02 2.24 16 16 C 0.03 1.58 5.26 84.65 0.44 2.02 16 17 N -0.92 -50.59 12.53 21.44 0.27 -50.32 16 18 Si 0.92 42.17 29.54 68.60 2.03 44.19 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 21 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 22 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 23 H 0.08 1.96 8.07 -2.39 -0.02 1.94 16 24 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 25 H 0.05 1.98 8.21 -1.79 -0.01 1.97 16 26 H 0.02 1.00 6.56 -2.49 -0.02 0.98 16 27 H 0.05 1.75 7.58 -1.75 -0.01 1.74 16 28 H 0.04 2.07 7.99 -1.88 -0.01 2.06 16 29 H 0.07 2.58 4.97 -2.35 -0.01 2.57 16 30 H 0.05 1.83 7.90 -1.72 -0.01 1.82 16 31 H 0.08 2.24 8.07 -2.16 -0.02 2.22 16 32 H 0.03 1.02 5.88 -2.61 -0.02 1.01 16 33 H 0.10 3.36 7.72 -2.67 -0.02 3.34 16 34 H 0.06 2.45 7.83 -2.66 -0.02 2.43 16 35 H 0.11 3.20 8.14 -2.40 -0.02 3.18 16 36 H 0.07 2.42 8.14 -2.43 -0.02 2.40 16 37 H 0.07 2.46 6.06 -2.66 -0.02 2.44 16 38 H 0.05 1.93 8.07 -2.04 -0.02 1.91 16 39 H 0.26 13.71 8.31 -92.71 -0.77 12.94 16 Total: -1.00 -53.41 293.17 1.41 -52.00 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 1.03 Total: 14.57 kcal Atomic # 6 Polarization: -30.67 SS G_CDS: 3.84 Total: -26.83 kcal Atomic # 7 Polarization: -68.96 SS G_CDS: -4.32 Total: -73.28 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Atomic # 16 Polarization: -9.49 SS G_CDS: -1.17 Total: -10.66 kcal Total: -53.41 1.41 -52.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259833362.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.205 kcal (2) G-P(sol) polarization free energy of solvation -53.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds