Wall clock time and date at job start Mon Mar 30 2020 06:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99723 * 2 1 4 4 H 1.48499 * 109.47122 * 274.99267 * 3 2 1 5 5 H 1.48498 * 109.47052 * 34.99524 * 3 2 1 6 6 H 1.48504 * 109.46869 * 154.99568 * 3 2 1 7 7 C 1.37877 * 120.00207 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99683 * 188.52672 * 7 2 1 9 9 C 1.50700 * 119.99973 * 8.52589 * 7 2 1 10 10 H 1.09000 * 109.46114 * 305.53603 * 9 7 2 11 11 C 1.53040 * 109.46146 * 65.51686 * 9 7 2 12 12 C 1.53122 * 109.27737 * 179.19644 * 11 9 7 13 13 C 1.53112 * 109.15922 * 302.34130 * 12 11 9 14 14 C 1.53039 * 109.27854 * 57.65642 * 13 12 11 15 15 N 1.46829 * 109.46534 * 185.55866 * 9 7 2 16 16 C 1.46901 * 110.98187 * 54.14342 * 15 9 7 17 17 C 1.52995 * 109.47383 * 190.25709 * 16 15 9 18 18 H 1.09001 * 110.70112 * 300.70715 * 17 16 15 19 19 C 1.54253 * 110.79075 * 177.38603 * 17 16 15 20 20 C 1.52337 * 112.58982 * 217.19843 * 19 17 16 21 21 C 1.54262 * 112.58711 * 0.02562 * 20 19 17 22 22 S 1.83958 * 110.78398 * 64.01497 * 17 16 15 23 23 H 0.96999 * 120.00231 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.50774 * 59.24902 * 11 9 7 25 25 H 1.08999 * 109.49993 * 299.13547 * 11 9 7 26 26 H 1.08998 * 109.52167 * 182.43908 * 12 11 9 27 27 H 1.09002 * 109.57411 * 62.28192 * 12 11 9 28 28 H 1.09007 * 109.50709 * 297.71614 * 13 12 11 29 29 H 1.09000 * 109.50788 * 177.59742 * 13 12 11 30 30 H 1.08994 * 109.46190 * 60.83411 * 14 13 12 31 31 H 1.09004 * 109.46348 * 180.81883 * 14 13 12 32 32 H 1.09001 * 109.47438 * 310.25703 * 16 15 9 33 33 H 1.09003 * 109.47170 * 70.25751 * 16 15 9 34 34 H 1.09000 * 108.86878 * 338.01655 * 19 17 16 35 35 H 1.09003 * 108.86992 * 96.52499 * 19 17 16 36 36 H 1.08997 * 108.86936 * 120.81667 * 20 19 17 37 37 H 1.08996 * 108.86789 * 239.32640 * 20 19 17 38 38 H 1.08998 * 110.78815 * 142.79775 * 21 20 19 39 39 H 1.08996 * 110.78927 * 266.06517 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3910 2.1074 -1.3947 5 1 1.5032 2.6199 0.8029 6 1 3.5955 1.4121 0.5918 7 6 2.0046 -1.1940 -0.0005 8 1 3.0756 -1.1992 0.1382 9 6 1.2636 -2.4919 -0.1946 10 1 0.4632 -2.5666 0.5415 11 6 0.6665 -2.5324 -1.6031 12 6 -0.0682 -3.8609 -1.8027 13 6 0.9099 -5.0158 -1.5709 14 6 1.5001 -4.9033 -0.1633 15 7 2.1925 -3.6160 -0.0232 16 6 2.8891 -3.5306 1.2673 17 6 4.0214 -4.5588 1.3047 18 1 3.6307 -5.5674 1.1698 19 6 4.8155 -4.4511 2.6228 20 6 6.3086 -4.6815 2.4269 21 6 6.6760 -4.9678 0.9563 22 16 5.2932 -4.1758 0.0319 23 1 -0.4850 0.8400 0.0004 24 1 1.4650 -2.4438 -2.3397 25 1 -0.0348 -1.7069 -1.7249 26 1 -0.4582 -3.9124 -2.8192 27 1 -0.8919 -3.9330 -1.0925 28 1 1.7125 -4.9664 -2.3069 29 1 0.3828 -5.9647 -1.6696 30 1 0.6986 -4.9667 0.5726 31 1 2.2080 -5.7160 -0.0003 32 1 3.3028 -2.5298 1.3915 33 1 2.1855 -3.7355 2.0743 34 1 4.6646 -3.4576 3.0450 35 1 4.4356 -5.1932 3.3249 36 1 6.8486 -3.7946 2.7585 37 1 6.6173 -5.5301 3.0373 38 1 7.6296 -4.5069 0.6990 39 1 6.7030 -6.0407 0.7662 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259866254.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:43 Heat of formation + Delta-G solvation = -12.431597 kcal Electronic energy + Delta-G solvation = -17836.245862 eV Core-core repulsion = 15289.982120 eV Total energy + Delta-G solvation = -2546.263743 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.24341 -35.97484 -33.00061 -32.85243 -29.78116 -29.34811 -25.98212 -25.03857 -23.57398 -21.57293 -20.84479 -19.84412 -18.61276 -16.49571 -16.35371 -15.40142 -15.01698 -14.29840 -14.11700 -13.91523 -13.51934 -13.29712 -12.85275 -12.55642 -12.39361 -12.30435 -11.88113 -11.58252 -10.98726 -10.95040 -10.85288 -10.74135 -10.70972 -10.48403 -10.31916 -10.15265 -9.92693 -9.63909 -9.38798 -9.14244 -8.67691 -8.38777 -7.25037 -7.04531 -6.00154 -4.00379 2.27395 2.80788 3.34146 3.41217 3.45631 4.44834 4.59869 4.83864 4.94489 5.13565 5.28543 5.33314 5.43731 5.54979 5.63973 5.71539 5.74621 5.82190 5.90532 6.01678 6.06078 6.17272 6.21768 6.33472 6.40350 6.43268 6.59764 6.76309 6.84748 6.89100 7.15688 7.28406 7.52563 7.73209 7.88450 8.17062 8.32712 8.65935 9.08141 9.63548 11.08792 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.017558 B = 0.008366 C = 0.006328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.328934 B = 3346.090378 C = 4423.737605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.505 4.505 8 H 0.066 0.934 9 C 0.220 3.780 10 H 0.004 0.996 11 C -0.098 4.098 12 C -0.122 4.122 13 C -0.109 4.109 14 C 0.055 3.945 15 N -0.527 5.527 16 C 0.080 3.920 17 C -0.031 4.031 18 H 0.084 0.916 19 C -0.125 4.125 20 C -0.120 4.120 21 C -0.093 4.093 22 S -0.241 6.241 23 H 0.260 0.740 24 H 0.046 0.954 25 H 0.075 0.925 26 H 0.044 0.956 27 H 0.048 0.952 28 H 0.064 0.936 29 H 0.048 0.952 30 H 0.017 0.983 31 H 0.056 0.944 32 H 0.102 0.898 33 H 0.030 0.970 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.096 0.904 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.555 -10.445 3.401 13.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.197 1.197 7 C -0.544 4.544 8 H 0.085 0.915 9 C 0.114 3.886 10 H 0.022 0.978 11 C -0.137 4.137 12 C -0.160 4.160 13 C -0.147 4.147 14 C -0.073 4.073 15 N -0.252 5.252 16 C -0.050 4.050 17 C -0.160 4.160 18 H 0.103 0.897 19 C -0.165 4.165 20 C -0.159 4.159 21 C -0.242 4.242 22 S -0.014 6.014 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.093 0.907 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.036 0.964 31 H 0.075 0.925 32 H 0.120 0.880 33 H 0.048 0.952 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.114 0.886 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.688 -9.701 1.941 12.529 hybrid contribution -0.223 0.205 1.693 1.719 sum 7.466 -9.495 3.633 12.614 Atomic orbital electron populations 1.69971 1.05929 1.26512 1.50680 1.24921 0.94748 0.99052 0.95232 0.86604 0.80030 0.83532 0.78021 1.20717 1.21542 1.19726 1.21182 0.94313 0.90014 1.48847 0.91547 1.19184 0.89534 0.87123 0.92783 0.97815 1.21546 0.98690 0.94588 0.98833 1.21671 0.97786 0.97060 0.99475 1.21503 0.98692 0.97326 0.97178 1.22028 0.95777 0.93228 0.96285 1.61972 1.31147 1.02153 1.29902 1.21921 0.92931 0.99032 0.91076 1.24062 0.96755 1.02355 0.92823 0.89741 1.22101 0.93622 1.03490 0.97247 1.21943 0.96195 1.02263 0.95515 1.24182 1.00719 1.02790 0.96492 1.88598 1.04481 1.76078 1.32291 0.93078 0.93535 0.90695 0.93767 0.93368 0.91738 0.93380 0.96447 0.92530 0.87979 0.95212 0.90313 0.91422 0.90985 0.91639 0.88564 0.90249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.52 12.12 55.43 0.67 -24.85 16 2 C 0.06 1.71 5.23 -17.82 -0.09 1.62 16 3 Si 0.89 21.51 29.55 -169.99 -5.02 16.49 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.51 -13.73 7.57 -34.44 -0.26 -13.99 16 8 H 0.07 1.84 6.58 -52.48 -0.35 1.49 16 9 C 0.22 5.49 1.69 -68.88 -0.12 5.38 16 10 H 0.00 0.12 8.09 -51.93 -0.42 -0.30 16 11 C -0.10 -2.35 5.20 -26.65 -0.14 -2.49 16 12 C -0.12 -2.43 6.00 -26.61 -0.16 -2.59 16 13 C -0.11 -1.95 6.09 -26.65 -0.16 -2.12 16 14 C 0.06 1.03 5.30 -3.83 -0.02 1.01 16 15 N -0.53 -11.27 4.24 -228.09 -0.97 -12.24 16 16 C 0.08 1.55 4.09 -3.83 -0.02 1.53 16 17 C -0.03 -0.49 3.15 -26.08 -0.08 -0.57 16 18 H 0.08 1.28 6.49 -51.93 -0.34 0.95 16 19 C -0.12 -1.60 5.93 -26.41 -0.16 -1.76 16 20 C -0.12 -1.33 6.31 -26.41 -0.17 -1.50 16 21 C -0.09 -1.13 7.47 37.82 0.28 -0.85 16 22 S -0.24 -4.10 22.54 -107.50 -2.42 -6.53 16 23 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 24 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.07 1.97 6.89 -51.93 -0.36 1.61 16 26 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.95 6.24 -51.93 -0.32 0.63 16 32 H 0.10 2.23 5.88 -51.93 -0.31 1.93 16 33 H 0.03 0.57 8.12 -51.93 -0.42 0.15 16 34 H 0.08 1.06 7.76 -51.93 -0.40 0.65 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 307.71 15.07 4.64 4.64 Total: -1.00 -28.55 307.71 -10.89 -39.44 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -6.70 Total: -0.63 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: -1.09 Total: -16.31 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: -0.30 Total: -37.09 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -4.10 SS G_CDS: -2.42 Total: -6.53 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.55 -10.89 -39.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259866254.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.007 kcal (2) G-P(sol) polarization free energy of solvation -28.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds