Wall clock time and date at job start Mon Mar 30 2020 06:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99723 * 2 1 4 4 H 1.48499 * 109.47122 * 274.99267 * 3 2 1 5 5 H 1.48498 * 109.47052 * 34.99524 * 3 2 1 6 6 H 1.48504 * 109.46869 * 154.99568 * 3 2 1 7 7 C 1.37877 * 120.00207 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99683 * 188.52672 * 7 2 1 9 9 C 1.50700 * 119.99973 * 8.52589 * 7 2 1 10 10 H 1.09000 * 109.46114 * 305.53603 * 9 7 2 11 11 C 1.53040 * 109.46146 * 65.51686 * 9 7 2 12 12 C 1.53122 * 109.27737 * 179.19644 * 11 9 7 13 13 C 1.53112 * 109.15922 * 302.34130 * 12 11 9 14 14 C 1.53039 * 109.27854 * 57.65642 * 13 12 11 15 15 N 1.46829 * 109.46534 * 185.55866 * 9 7 2 16 16 C 1.46901 * 110.98187 * 54.14342 * 15 9 7 17 17 C 1.52995 * 109.47383 * 190.25709 * 16 15 9 18 18 H 1.09001 * 110.70112 * 300.70715 * 17 16 15 19 19 C 1.54253 * 110.79075 * 177.38603 * 17 16 15 20 20 C 1.52337 * 112.58982 * 217.19843 * 19 17 16 21 21 C 1.54262 * 112.58711 * 0.02562 * 20 19 17 22 22 S 1.83958 * 110.78398 * 64.01497 * 17 16 15 23 23 H 0.96999 * 120.00231 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.50774 * 59.24902 * 11 9 7 25 25 H 1.08999 * 109.49993 * 299.13547 * 11 9 7 26 26 H 1.08998 * 109.52167 * 182.43908 * 12 11 9 27 27 H 1.09002 * 109.57411 * 62.28192 * 12 11 9 28 28 H 1.09007 * 109.50709 * 297.71614 * 13 12 11 29 29 H 1.09000 * 109.50788 * 177.59742 * 13 12 11 30 30 H 1.08994 * 109.46190 * 60.83411 * 14 13 12 31 31 H 1.09004 * 109.46348 * 180.81883 * 14 13 12 32 32 H 1.09001 * 109.47438 * 310.25703 * 16 15 9 33 33 H 1.09003 * 109.47170 * 70.25751 * 16 15 9 34 34 H 1.09000 * 108.86878 * 338.01655 * 19 17 16 35 35 H 1.09003 * 108.86992 * 96.52499 * 19 17 16 36 36 H 1.08997 * 108.86936 * 120.81667 * 20 19 17 37 37 H 1.08996 * 108.86789 * 239.32640 * 20 19 17 38 38 H 1.08998 * 110.78815 * 142.79775 * 21 20 19 39 39 H 1.08996 * 110.78927 * 266.06517 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3910 2.1074 -1.3947 5 1 1.5032 2.6199 0.8029 6 1 3.5955 1.4121 0.5918 7 6 2.0046 -1.1940 -0.0005 8 1 3.0756 -1.1992 0.1382 9 6 1.2636 -2.4919 -0.1946 10 1 0.4632 -2.5666 0.5415 11 6 0.6665 -2.5324 -1.6031 12 6 -0.0682 -3.8609 -1.8027 13 6 0.9099 -5.0158 -1.5709 14 6 1.5001 -4.9033 -0.1633 15 7 2.1925 -3.6160 -0.0232 16 6 2.8891 -3.5306 1.2673 17 6 4.0214 -4.5588 1.3047 18 1 3.6307 -5.5674 1.1698 19 6 4.8155 -4.4511 2.6228 20 6 6.3086 -4.6815 2.4269 21 6 6.6760 -4.9678 0.9563 22 16 5.2932 -4.1758 0.0319 23 1 -0.4850 0.8400 0.0004 24 1 1.4650 -2.4438 -2.3397 25 1 -0.0348 -1.7069 -1.7249 26 1 -0.4582 -3.9124 -2.8192 27 1 -0.8919 -3.9330 -1.0925 28 1 1.7125 -4.9664 -2.3069 29 1 0.3828 -5.9647 -1.6696 30 1 0.6986 -4.9667 0.5726 31 1 2.2080 -5.7160 -0.0003 32 1 3.3028 -2.5298 1.3915 33 1 2.1855 -3.7355 2.0743 34 1 4.6646 -3.4576 3.0450 35 1 4.4356 -5.1932 3.3249 36 1 6.8486 -3.7946 2.7585 37 1 6.6173 -5.5301 3.0373 38 1 7.6296 -4.5069 0.6990 39 1 6.7030 -6.0407 0.7662 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259866254.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:43 Heat of formation + Delta-G solvation = -28.455726 kcal Electronic energy + Delta-G solvation = -17836.940721 eV Core-core repulsion = 15289.982120 eV Total energy + Delta-G solvation = -2546.958601 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.92172 -37.12522 -34.89350 -34.47491 -31.50050 -30.80684 -27.42345 -26.81738 -25.01275 -23.22963 -22.46032 -20.99074 -20.35278 -18.47607 -17.63284 -17.02117 -16.51450 -15.85878 -15.60567 -15.30218 -14.97344 -14.93144 -14.33623 -14.19468 -13.88379 -13.78555 -13.47051 -12.86771 -12.66304 -12.61531 -12.39706 -12.26168 -12.19684 -12.04599 -11.91104 -11.86670 -11.44132 -11.36462 -10.88654 -10.64206 -10.53084 -10.46304 -8.89530 -8.47931 -8.13845 -6.20160 1.09811 1.38282 1.40890 1.50972 1.66479 2.41823 3.15607 3.24954 3.74294 3.83162 4.03241 4.10663 4.16837 4.25545 4.34773 4.39637 4.44571 4.58317 4.62129 4.74124 4.80507 4.85860 4.86329 5.00441 5.07845 5.08265 5.15157 5.17390 5.24106 5.29104 5.36210 5.41786 5.63116 5.72233 5.78315 6.24542 6.41603 6.80775 6.96115 7.47373 8.94628 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.017558 B = 0.008366 C = 0.006328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.328934 B = 3346.090378 C = 4423.737605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.016 3.984 3 Si 0.949 3.051 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.514 4.514 8 H 0.055 0.945 9 C 0.227 3.773 10 H -0.036 1.036 11 C -0.093 4.093 12 C -0.116 4.116 13 C -0.103 4.103 14 C 0.053 3.947 15 N -0.533 5.533 16 C 0.083 3.917 17 C -0.012 4.012 18 H 0.097 0.903 19 C -0.124 4.124 20 C -0.117 4.117 21 C -0.068 4.068 22 S -0.331 6.331 23 H 0.261 0.739 24 H 0.033 0.967 25 H 0.042 0.958 26 H 0.065 0.935 27 H 0.042 0.958 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.013 0.987 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.027 0.973 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.109 0.891 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.082 -12.414 3.974 15.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.183 4.183 3 Si 0.776 3.224 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.553 4.553 8 H 0.073 0.927 9 C 0.120 3.880 10 H -0.019 1.019 11 C -0.131 4.131 12 C -0.154 4.154 13 C -0.140 4.140 14 C -0.075 4.075 15 N -0.257 5.257 16 C -0.046 4.046 17 C -0.141 4.141 18 H 0.115 0.885 19 C -0.163 4.163 20 C -0.156 4.156 21 C -0.216 4.216 22 S -0.105 6.105 23 H 0.070 0.930 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.084 0.916 27 H 0.061 0.939 28 H 0.080 0.920 29 H 0.104 0.896 30 H 0.031 0.969 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.045 0.955 34 H 0.084 0.916 35 H 0.111 0.889 36 H 0.093 0.907 37 H 0.116 0.884 38 H 0.127 0.873 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.229 -11.683 2.520 15.100 hybrid contribution -0.664 0.781 1.545 1.854 sum 8.565 -10.902 4.064 14.447 Atomic orbital electron populations 1.70081 1.07148 1.27203 1.51594 1.25632 0.95504 1.02115 0.95070 0.85670 0.78937 0.79820 0.78022 1.20450 1.20864 1.19325 1.21397 0.93876 0.91483 1.48517 0.92682 1.18927 0.88832 0.88010 0.92187 1.01871 1.21370 0.97862 0.96143 0.97754 1.21596 0.97710 0.95480 1.00618 1.21489 0.98239 0.97979 0.96332 1.22155 0.96146 0.92305 0.96872 1.61942 1.30360 1.02294 1.31120 1.21820 0.93873 0.98775 0.90122 1.23916 0.95245 1.01110 0.93816 0.88498 1.22136 0.94748 1.03671 0.95782 1.21937 0.94629 1.03847 0.95184 1.24279 0.98392 1.03286 0.95668 1.88863 1.08713 1.77741 1.35195 0.93049 0.94786 0.93894 0.91649 0.93879 0.92029 0.89626 0.96863 0.89999 0.91240 0.95545 0.91626 0.88903 0.90700 0.88393 0.87298 0.88292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.56 12.12 21.45 0.26 -54.30 16 2 C 0.02 0.88 5.23 84.65 0.44 1.33 16 3 Si 0.95 45.25 29.55 68.60 2.03 47.28 16 4 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 5 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 7 C -0.51 -29.14 7.57 25.60 0.19 -28.95 16 8 H 0.06 3.19 6.58 -2.91 -0.02 3.17 16 9 C 0.23 11.84 1.69 44.20 0.07 11.92 16 10 H -0.04 -2.14 8.09 -2.39 -0.02 -2.16 16 11 C -0.09 -4.58 5.20 30.65 0.16 -4.42 16 12 C -0.12 -4.57 6.00 30.67 0.18 -4.38 16 13 C -0.10 -3.47 6.09 30.64 0.19 -3.28 16 14 C 0.05 1.92 5.30 86.33 0.46 2.38 16 15 N -0.53 -23.14 4.24 -875.55 -3.71 -26.85 16 16 C 0.08 3.29 4.09 86.30 0.35 3.64 16 17 C -0.01 -0.37 3.15 31.02 0.10 -0.27 16 18 H 0.10 2.69 6.49 -2.39 -0.02 2.68 16 19 C -0.12 -2.88 5.93 30.80 0.18 -2.69 16 20 C -0.12 -2.18 6.31 30.80 0.19 -1.98 16 21 C -0.07 -1.44 7.47 72.41 0.54 -0.90 16 22 S -0.33 -11.03 22.54 -56.49 -1.27 -12.30 16 23 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 24 H 0.03 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.04 2.36 6.89 -2.39 -0.02 2.34 16 26 H 0.06 2.27 8.14 -2.39 -0.02 2.26 16 27 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 29 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.08 2.55 6.24 -2.38 -0.01 2.54 16 32 H 0.07 3.18 5.88 -2.39 -0.01 3.17 16 33 H 0.03 1.04 8.12 -2.39 -0.02 1.02 16 34 H 0.06 1.70 7.76 -2.39 -0.02 1.68 16 35 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -64.83 307.71 1.37 -63.46 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 1.00 Total: 10.32 kcal Atomic # 6 Polarization: -30.68 SS G_CDS: 3.07 Total: -27.61 kcal Atomic # 7 Polarization: -77.69 SS G_CDS: -3.45 Total: -81.15 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Atomic # 16 Polarization: -11.03 SS G_CDS: -1.27 Total: -12.30 kcal Total: -64.83 1.37 -63.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259866254.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.005 kcal (2) G-P(sol) polarization free energy of solvation -64.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds