Wall clock time and date at job start Mon Mar 30 2020 06:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99681 * 2 1 4 4 H 1.48510 * 109.47228 * 89.99862 * 3 2 1 5 5 H 1.48502 * 109.47288 * 209.99485 * 3 2 1 6 6 H 1.48498 * 109.47356 * 329.99932 * 3 2 1 7 7 C 1.37878 * 120.00300 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00056 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99957 * 180.02562 * 7 2 1 10 10 H 1.09007 * 109.46054 * 300.02157 * 9 7 2 11 11 C 1.53034 * 109.46415 * 59.99663 * 9 7 2 12 12 C 1.53117 * 109.27669 * 179.19382 * 11 9 7 13 13 C 1.53115 * 109.16646 * 302.34870 * 12 11 9 14 14 C 1.53032 * 109.27623 * 57.65288 * 13 12 11 15 15 N 1.46847 * 109.46302 * 180.02562 * 9 7 2 16 16 C 1.46907 * 110.99917 * 54.14335 * 15 9 7 17 17 C 1.53001 * 109.47060 * 76.74740 * 16 15 9 18 18 H 1.09003 * 110.76019 * 50.76243 * 17 16 15 19 19 C 1.55128 * 110.85597 * 174.25701 * 17 16 15 20 20 C 1.54038 * 106.81133 * 160.10635 * 19 17 16 21 21 C 1.54278 * 109.08606 * 313.05574 * 20 19 17 22 22 S 1.83094 * 104.64979 * 27.82219 * 21 20 19 23 23 H 0.96993 * 120.00145 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.50887 * 299.13797 * 11 9 7 25 25 H 1.09003 * 109.50150 * 59.22046 * 11 9 7 26 26 H 1.08993 * 109.52436 * 62.25837 * 12 11 9 27 27 H 1.09009 * 109.52377 * 182.44389 * 12 11 9 28 28 H 1.08994 * 109.51012 * 177.59993 * 13 12 11 29 29 H 1.09006 * 109.50134 * 297.67707 * 13 12 11 30 30 H 1.09004 * 109.46563 * 60.84035 * 14 13 12 31 31 H 1.09001 * 109.46476 * 180.80581 * 14 13 12 32 32 H 1.08999 * 109.46914 * 196.75205 * 16 15 9 33 33 H 1.09003 * 109.46822 * 316.74859 * 16 15 9 34 34 H 1.09006 * 109.97816 * 279.65580 * 19 17 16 35 35 H 1.09005 * 109.97584 * 40.93506 * 19 17 16 36 36 H 1.08996 * 109.64123 * 193.02339 * 20 19 17 37 37 H 1.09005 * 109.28170 * 72.86960 * 20 19 17 38 38 H 1.09000 * 110.40280 * 269.03297 * 21 20 19 39 39 H 1.08998 * 110.40283 * 146.61034 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 1.4002 5 1 3.5467 1.4403 -0.6999 6 1 1.4465 2.6527 -0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 1 3.8751 -0.6799 -0.8888 11 6 4.0210 -0.4721 1.2507 12 6 5.5521 -0.4921 1.2572 13 6 6.0361 -1.9439 1.2071 14 6 5.4682 -2.6230 -0.0412 15 7 4.0010 -2.5785 0.0010 16 6 3.4194 -3.3423 -1.1110 17 6 4.1225 -2.9601 -2.4150 18 1 5.2049 -3.0248 -2.3037 19 6 3.6336 -3.8503 -3.5876 20 6 3.9775 -3.1015 -4.8890 21 6 3.5364 -1.6291 -4.7554 22 16 3.6211 -1.2814 -2.9598 23 1 -0.4850 0.8400 -0.0004 24 1 3.6706 0.5600 1.2431 25 1 3.6462 -0.9772 2.1409 26 1 5.9271 0.0470 0.3873 27 1 5.9188 -0.0171 2.1672 28 1 7.1251 -1.9634 1.1685 29 1 5.6940 -2.4724 2.0970 30 1 5.8223 -2.1022 -0.9309 31 1 5.7993 -3.6610 -0.0724 32 1 3.5500 -4.4086 -0.9267 33 1 2.3564 -3.1149 -1.1911 34 1 4.1438 -4.8133 -3.5619 35 1 2.5557 -3.9978 -3.5189 36 1 3.4566 -3.5647 -5.7268 37 1 5.0536 -3.1471 -5.0569 38 1 2.5165 -1.5035 -5.1189 39 1 4.2184 -0.9771 -5.3012 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259866261.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:48 Heat of formation + Delta-G solvation = 3.021213 kcal Electronic energy + Delta-G solvation = -18395.072208 eV Core-core repulsion = 15849.478549 eV Total energy + Delta-G solvation = -2545.593659 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.68928 -35.91448 -33.21059 -32.71265 -30.20480 -29.28891 -25.96516 -24.89411 -23.60255 -21.75838 -20.74802 -20.63920 -18.57496 -16.73863 -16.11128 -15.63012 -15.07681 -14.43643 -14.10352 -13.82429 -13.52398 -13.45559 -13.04034 -12.85317 -12.43839 -12.29618 -11.65632 -11.54807 -11.44668 -11.23941 -11.06652 -10.86056 -10.64373 -10.48896 -10.36364 -10.12747 -9.97720 -9.68232 -9.17291 -9.04785 -8.75563 -8.40087 -7.29742 -6.91328 -5.94226 -3.88988 2.37541 2.98989 3.35864 3.47394 3.50890 4.52975 4.69034 4.88458 4.94697 5.12272 5.30947 5.37460 5.42931 5.47351 5.52086 5.63537 5.72168 5.80130 5.85641 5.95150 6.04287 6.06418 6.11352 6.14368 6.25525 6.31290 6.36583 6.51644 6.60802 6.72026 6.78000 6.92069 7.02370 7.42639 7.68961 8.02877 8.14322 8.74759 9.09205 9.69606 11.18902 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.017885 B = 0.011293 C = 0.008476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.213094 B = 2478.739872 C = 3302.570560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.079 3.921 3 Si 0.872 3.128 4 H -0.282 1.282 5 H -0.262 1.262 6 H -0.299 1.299 7 C -0.490 4.490 8 H 0.081 0.919 9 C 0.184 3.816 10 H 0.024 0.976 11 C -0.118 4.118 12 C -0.126 4.126 13 C -0.110 4.110 14 C 0.049 3.951 15 N -0.520 5.520 16 C 0.073 3.927 17 C -0.082 4.082 18 H 0.088 0.912 19 C -0.120 4.120 20 C -0.122 4.122 21 C -0.119 4.119 22 S -0.217 6.217 23 H 0.261 0.739 24 H 0.048 0.952 25 H 0.067 0.933 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.029 0.971 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.111 0.889 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.084 0.916 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.703 -6.040 -5.945 13.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.122 4.122 3 Si 0.703 3.297 4 H -0.210 1.210 5 H -0.187 1.187 6 H -0.227 1.227 7 C -0.528 4.528 8 H 0.099 0.901 9 C 0.076 3.924 10 H 0.041 0.959 11 C -0.156 4.156 12 C -0.163 4.163 13 C -0.147 4.147 14 C -0.080 4.080 15 N -0.243 5.243 16 C -0.057 4.057 17 C -0.212 4.212 18 H 0.106 0.894 19 C -0.160 4.160 20 C -0.161 4.161 21 C -0.266 4.266 22 S 0.008 5.992 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.086 0.914 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.129 0.871 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.103 0.897 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.189 -5.130 -4.910 12.419 hybrid contribution 0.978 0.457 -1.448 1.806 sum 11.167 -4.673 -6.359 13.674 Atomic orbital electron populations 1.69861 1.06059 1.26543 1.51589 1.24743 0.94479 0.98278 0.94675 0.87067 0.80527 0.84549 0.77548 1.20970 1.18695 1.22695 1.20819 0.87860 0.94401 1.49734 0.90109 1.19894 0.96431 0.83850 0.92197 0.95883 1.22016 0.92509 0.99644 1.01472 1.21669 0.98162 0.96120 1.00378 1.21503 0.98264 0.96280 0.98696 1.22106 0.90114 0.99062 0.96692 1.62055 1.04344 1.16120 1.41751 1.22331 1.01933 0.96835 0.84628 1.24962 1.02816 0.93660 0.99798 0.89353 1.22603 1.02738 0.98449 0.92200 1.22229 1.01386 0.94016 0.98421 1.24182 1.04196 0.98172 1.00084 1.88879 1.91448 1.17218 1.01607 0.92902 0.93387 0.91403 0.93093 0.93114 0.92850 0.91487 0.95287 0.92142 0.91511 0.87078 0.90671 0.90104 0.90918 0.91701 0.89687 0.90108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.60 13.96 55.43 0.77 -26.82 16 2 C 0.08 2.29 5.45 -17.82 -0.10 2.19 16 3 Si 0.87 22.62 24.36 -169.99 -4.14 18.48 16 4 H -0.28 -7.16 6.87 56.52 0.39 -6.77 16 5 H -0.26 -6.66 6.53 56.52 0.37 -6.29 16 6 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 7 C -0.49 -13.41 7.99 -34.44 -0.28 -13.69 16 8 H 0.08 2.40 6.64 -52.49 -0.35 2.05 16 9 C 0.18 4.31 0.80 -68.87 -0.05 4.25 16 10 H 0.02 0.59 3.95 -34.25 -0.14 0.46 16 11 C -0.12 -2.66 4.84 -26.65 -0.13 -2.79 16 12 C -0.13 -2.31 6.00 -26.61 -0.16 -2.47 16 13 C -0.11 -1.77 6.09 -26.66 -0.16 -1.94 16 14 C 0.05 0.83 4.48 -3.83 -0.02 0.81 16 15 N -0.52 -10.55 4.69 -228.07 -1.07 -11.62 16 16 C 0.07 1.34 4.98 -3.82 -0.02 1.32 16 17 C -0.08 -1.35 2.68 -25.61 -0.07 -1.41 16 18 H 0.09 1.39 5.97 -51.93 -0.31 1.08 16 19 C -0.12 -1.61 5.92 -25.06 -0.15 -1.76 16 20 C -0.12 -1.51 6.38 -25.52 -0.16 -1.67 16 21 C -0.12 -1.77 7.34 37.83 0.28 -1.50 16 22 S -0.22 -4.28 18.90 -107.50 -2.03 -6.31 16 23 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 24 H 0.05 1.15 3.29 -51.93 -0.17 0.98 16 25 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.03 0.51 6.39 -51.93 -0.33 0.18 16 31 H 0.06 0.90 8.12 -51.93 -0.42 0.48 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.11 2.42 5.67 -51.93 -0.29 2.13 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 1.14 8.08 -51.93 -0.42 0.72 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 291.36 15.07 4.39 4.39 Total: -1.00 -30.05 291.36 -9.36 -39.41 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -6.26 Total: 1.11 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: -1.02 Total: -18.63 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: -0.30 Total: -38.44 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.14 Total: 18.48 kcal Atomic # 16 Polarization: -4.28 SS G_CDS: -2.03 Total: -6.31 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.05 -9.36 -39.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259866261.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.429 kcal (2) G-P(sol) polarization free energy of solvation -30.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds