Wall clock time and date at job start Mon Mar 30 2020 06:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99681 * 2 1 4 4 H 1.48510 * 109.47228 * 89.99862 * 3 2 1 5 5 H 1.48502 * 109.47288 * 209.99485 * 3 2 1 6 6 H 1.48498 * 109.47356 * 329.99932 * 3 2 1 7 7 C 1.37878 * 120.00300 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00056 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99957 * 180.02562 * 7 2 1 10 10 H 1.09007 * 109.46054 * 300.02157 * 9 7 2 11 11 C 1.53034 * 109.46415 * 59.99663 * 9 7 2 12 12 C 1.53117 * 109.27669 * 179.19382 * 11 9 7 13 13 C 1.53115 * 109.16646 * 302.34870 * 12 11 9 14 14 C 1.53032 * 109.27623 * 57.65288 * 13 12 11 15 15 N 1.46847 * 109.46302 * 180.02562 * 9 7 2 16 16 C 1.46907 * 110.99917 * 54.14335 * 15 9 7 17 17 C 1.53001 * 109.47060 * 76.74740 * 16 15 9 18 18 H 1.09003 * 110.76019 * 50.76243 * 17 16 15 19 19 C 1.55128 * 110.85597 * 174.25701 * 17 16 15 20 20 C 1.54038 * 106.81133 * 160.10635 * 19 17 16 21 21 C 1.54278 * 109.08606 * 313.05574 * 20 19 17 22 22 S 1.83094 * 104.64979 * 27.82219 * 21 20 19 23 23 H 0.96993 * 120.00145 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.50887 * 299.13797 * 11 9 7 25 25 H 1.09003 * 109.50150 * 59.22046 * 11 9 7 26 26 H 1.08993 * 109.52436 * 62.25837 * 12 11 9 27 27 H 1.09009 * 109.52377 * 182.44389 * 12 11 9 28 28 H 1.08994 * 109.51012 * 177.59993 * 13 12 11 29 29 H 1.09006 * 109.50134 * 297.67707 * 13 12 11 30 30 H 1.09004 * 109.46563 * 60.84035 * 14 13 12 31 31 H 1.09001 * 109.46476 * 180.80581 * 14 13 12 32 32 H 1.08999 * 109.46914 * 196.75205 * 16 15 9 33 33 H 1.09003 * 109.46822 * 316.74859 * 16 15 9 34 34 H 1.09006 * 109.97816 * 279.65580 * 19 17 16 35 35 H 1.09005 * 109.97584 * 40.93506 * 19 17 16 36 36 H 1.08996 * 109.64123 * 193.02339 * 20 19 17 37 37 H 1.09005 * 109.28170 * 72.86960 * 20 19 17 38 38 H 1.09000 * 110.40280 * 269.03297 * 21 20 19 39 39 H 1.08998 * 110.40283 * 146.61034 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 1.4002 5 1 3.5467 1.4403 -0.6999 6 1 1.4465 2.6527 -0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 1 3.8751 -0.6799 -0.8888 11 6 4.0210 -0.4721 1.2507 12 6 5.5521 -0.4921 1.2572 13 6 6.0361 -1.9439 1.2071 14 6 5.4682 -2.6230 -0.0412 15 7 4.0010 -2.5785 0.0010 16 6 3.4194 -3.3423 -1.1110 17 6 4.1225 -2.9601 -2.4150 18 1 5.2049 -3.0248 -2.3037 19 6 3.6336 -3.8503 -3.5876 20 6 3.9775 -3.1015 -4.8890 21 6 3.5364 -1.6291 -4.7554 22 16 3.6211 -1.2814 -2.9598 23 1 -0.4850 0.8400 -0.0004 24 1 3.6706 0.5600 1.2431 25 1 3.6462 -0.9772 2.1409 26 1 5.9271 0.0470 0.3873 27 1 5.9188 -0.0171 2.1672 28 1 7.1251 -1.9634 1.1685 29 1 5.6940 -2.4724 2.0970 30 1 5.8223 -2.1022 -0.9309 31 1 5.7993 -3.6610 -0.0724 32 1 3.5500 -4.4086 -0.9267 33 1 2.3564 -3.1149 -1.1911 34 1 4.1438 -4.8133 -3.5619 35 1 2.5557 -3.9978 -3.5189 36 1 3.4566 -3.5647 -5.7268 37 1 5.0536 -3.1471 -5.0569 38 1 2.5165 -1.5035 -5.1189 39 1 4.2184 -0.9771 -5.3012 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259866261.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:48 Heat of formation + Delta-G solvation = -16.948717 kcal Electronic energy + Delta-G solvation = -18395.938169 eV Core-core repulsion = 15849.478549 eV Total energy + Delta-G solvation = -2546.459620 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.23505 -37.11386 -34.78764 -34.58824 -32.00504 -30.60445 -27.49169 -26.58408 -24.98537 -23.33745 -22.29067 -21.84943 -20.11332 -18.78561 -17.47589 -17.29208 -16.33536 -16.04557 -15.84809 -15.20884 -15.14378 -14.95301 -14.58628 -14.27032 -14.05672 -13.73708 -13.17730 -12.99830 -12.96417 -12.59109 -12.44516 -12.38031 -12.27671 -12.18981 -11.74642 -11.64679 -11.51745 -11.38510 -10.96862 -10.76351 -10.53848 -10.33051 -8.87296 -8.43776 -8.19129 -6.13716 1.03409 1.26937 1.33174 1.41424 1.70894 2.36369 3.17010 3.29047 3.74433 3.80983 3.99322 4.05758 4.10704 4.17205 4.21800 4.31463 4.45534 4.54659 4.65914 4.73085 4.78169 4.79065 4.86413 4.92559 4.96163 4.99987 5.06805 5.11655 5.13533 5.20193 5.24335 5.39080 5.42809 5.62264 5.78983 6.12160 6.46633 6.80170 6.87655 7.47361 8.97711 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.017885 B = 0.011293 C = 0.008476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.213094 B = 2478.739872 C = 3302.570560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.026 3.974 3 Si 0.926 3.074 4 H -0.274 1.274 5 H -0.255 1.255 6 H -0.307 1.307 7 C -0.470 4.470 8 H 0.043 0.957 9 C 0.188 3.812 10 H 0.022 0.978 11 C -0.124 4.124 12 C -0.121 4.121 13 C -0.106 4.106 14 C 0.048 3.952 15 N -0.535 5.535 16 C 0.073 3.927 17 C -0.057 4.057 18 H 0.105 0.895 19 C -0.117 4.117 20 C -0.115 4.115 21 C -0.096 4.096 22 S -0.334 6.334 23 H 0.259 0.741 24 H 0.029 0.971 25 H 0.055 0.945 26 H 0.048 0.952 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.027 0.973 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.110 0.890 35 H 0.065 0.935 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.054 -7.521 -6.882 17.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.170 4.170 3 Si 0.756 3.244 4 H -0.200 1.200 5 H -0.180 1.180 6 H -0.235 1.235 7 C -0.508 4.508 8 H 0.061 0.939 9 C 0.080 3.920 10 H 0.038 0.962 11 C -0.162 4.162 12 C -0.159 4.159 13 C -0.143 4.143 14 C -0.080 4.080 15 N -0.258 5.258 16 C -0.056 4.056 17 C -0.187 4.187 18 H 0.123 0.877 19 C -0.156 4.156 20 C -0.153 4.153 21 C -0.243 4.243 22 S -0.109 6.109 23 H 0.068 0.932 24 H 0.047 0.953 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.091 0.909 28 H 0.108 0.892 29 H 0.085 0.915 30 H 0.045 0.955 31 H 0.109 0.891 32 H 0.114 0.886 33 H 0.085 0.915 34 H 0.128 0.872 35 H 0.084 0.916 36 H 0.116 0.884 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 13.571 -6.626 -5.838 16.191 hybrid contribution -0.085 0.783 -1.217 1.450 sum 13.486 -5.844 -7.056 16.303 Atomic orbital electron populations 1.69999 1.07629 1.27022 1.54634 1.25371 0.94972 1.01331 0.95336 0.86193 0.79436 0.81009 0.77784 1.20042 1.17984 1.23525 1.21049 0.90462 0.92520 1.46774 0.93863 1.19666 0.93455 0.86225 0.92681 0.96157 1.21965 0.96022 0.97995 1.00210 1.21638 0.94599 0.98262 1.01397 1.21528 1.00385 0.94244 0.98172 1.22244 0.87573 1.01040 0.97131 1.62009 1.06802 1.14066 1.42894 1.22223 0.99582 0.98062 0.85741 1.24891 1.03110 0.91044 0.99633 0.87702 1.22635 1.02194 0.99450 0.91345 1.22243 1.02858 0.91689 0.98527 1.24200 1.04491 1.00618 0.95032 1.89140 1.92068 1.21992 1.07674 0.93189 0.95288 0.92650 0.93331 0.90916 0.89180 0.91464 0.95507 0.89138 0.88618 0.91513 0.87175 0.91593 0.88357 0.89781 0.90216 0.88645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.19 13.96 21.45 0.30 -60.89 16 2 C 0.03 1.57 5.45 84.65 0.46 2.03 16 3 Si 0.93 48.42 24.36 68.60 1.67 50.09 16 4 H -0.27 -13.72 6.87 99.48 0.68 -13.04 16 5 H -0.26 -12.92 6.53 99.48 0.65 -12.27 16 6 H -0.31 -16.21 7.11 99.48 0.71 -15.50 16 7 C -0.47 -26.84 7.99 25.60 0.20 -26.63 16 8 H 0.04 2.74 6.64 -2.91 -0.02 2.72 16 9 C 0.19 8.86 0.80 44.19 0.04 8.90 16 10 H 0.02 1.05 3.95 -13.62 -0.05 1.00 16 11 C -0.12 -5.51 4.84 30.64 0.15 -5.36 16 12 C -0.12 -4.15 6.00 30.67 0.18 -3.97 16 13 C -0.11 -3.02 6.09 30.64 0.19 -2.83 16 14 C 0.05 1.47 4.48 86.32 0.39 1.86 16 15 N -0.53 -21.15 4.69 -875.47 -4.10 -25.26 16 16 C 0.07 2.66 4.98 86.30 0.43 3.09 16 17 C -0.06 -1.76 2.68 31.32 0.08 -1.67 16 18 H 0.11 2.92 5.97 -2.39 -0.01 2.91 16 19 C -0.12 -2.75 5.92 31.67 0.19 -2.57 16 20 C -0.11 -2.39 6.38 31.38 0.20 -2.19 16 21 C -0.10 -2.69 7.34 72.42 0.53 -2.16 16 22 S -0.33 -13.11 18.90 -56.49 -1.07 -14.18 16 23 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 24 H 0.03 1.38 3.29 -2.39 -0.01 1.37 16 25 H 0.05 2.53 8.14 -2.39 -0.02 2.51 16 26 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 28 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 30 H 0.03 0.85 6.39 -2.38 -0.02 0.84 16 31 H 0.09 2.27 8.12 -2.39 -0.02 2.25 16 32 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 33 H 0.07 3.03 5.67 -2.39 -0.01 3.02 16 34 H 0.11 1.89 8.14 -2.38 -0.02 1.87 16 35 H 0.07 1.76 8.08 -2.38 -0.02 1.74 16 36 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -69.66 291.36 0.73 -68.93 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 0.89 Total: 12.82 kcal Atomic # 6 Polarization: -34.55 SS G_CDS: 3.04 Total: -31.51 kcal Atomic # 7 Polarization: -82.34 SS G_CDS: -3.81 Total: -86.15 kcal Atomic # 14 Polarization: 48.42 SS G_CDS: 1.67 Total: 50.09 kcal Atomic # 16 Polarization: -13.11 SS G_CDS: -1.07 Total: -14.18 kcal Total: -69.66 0.73 -68.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259866261.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.983 kcal (2) G-P(sol) polarization free energy of solvation -69.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds