Wall clock time and date at job start Mon Mar 30 2020 06:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00344 * 2 1 4 4 H 1.48494 * 109.47192 * 269.99619 * 3 2 1 5 5 H 1.48496 * 109.46877 * 30.00200 * 3 2 1 6 6 H 1.48500 * 109.47036 * 149.99785 * 3 2 1 7 7 C 1.37882 * 119.99694 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99618 * 180.02562 * 7 2 1 9 9 C 1.50691 * 119.99876 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.95808 * 61.23149 * 9 7 2 11 11 C 1.53018 * 109.97022 * 299.99685 * 9 7 2 12 12 C 1.45861 * 115.26554 * 148.14949 * 11 9 7 13 13 S 1.83741 * 109.14512 * 64.22213 * 12 11 9 14 14 C 1.80180 * 102.69635 * 292.59604 * 13 12 11 15 15 C 1.53620 * 112.94737 * 84.98020 * 14 13 12 16 16 N 1.45544 * 109.96595 * 182.55048 * 9 7 2 17 17 C 1.46890 * 111.00067 * 346.70058 * 16 9 7 18 18 C 1.53007 * 109.47273 * 190.00232 * 17 16 9 19 19 C 1.52994 * 109.47103 * 180.02562 * 18 17 16 20 20 C 1.53001 * 117.49877 * 243.61628 * 19 18 17 21 21 C 1.52993 * 60.00297 * 252.51162 * 20 19 18 22 22 H 0.97009 * 119.99216 * 0.02562 * 1 2 3 23 23 H 1.09001 * 108.32039 * 26.64753 * 11 9 7 24 24 H 1.08995 * 108.18465 * 269.54605 * 11 9 7 25 25 H 1.09001 * 109.52644 * 304.31883 * 12 11 9 26 26 H 1.09006 * 109.57614 * 184.15352 * 12 11 9 27 27 H 1.09002 * 108.77161 * 205.84244 * 14 13 12 28 28 H 1.08998 * 108.76856 * 324.12776 * 14 13 12 29 29 H 1.09002 * 108.15149 * 77.26238 * 15 14 13 30 30 H 1.08998 * 108.15209 * 193.81097 * 15 14 13 31 31 H 1.08999 * 109.47443 * 310.00047 * 17 16 9 32 32 H 1.09000 * 109.47386 * 70.00268 * 17 16 9 33 33 H 1.09008 * 109.46904 * 300.00013 * 18 17 16 34 34 H 1.08995 * 109.47300 * 59.99512 * 18 17 16 35 35 H 1.09005 * 115.55436 * 29.32796 * 19 18 17 36 36 H 1.08998 * 117.49766 * 0.02562 * 20 19 18 37 37 H 1.09005 * 117.50087 * 145.01964 * 20 19 18 38 38 H 1.09007 * 117.49959 * 252.50893 * 21 20 19 39 39 H 1.09001 * 117.49948 * 107.48886 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 1 0.6382 -2.5749 -0.8977 11 6 0.3664 -2.5918 1.2457 12 6 -0.8762 -3.3359 1.0728 13 16 -0.4806 -5.0911 0.7002 14 6 0.2811 -4.9881 -0.9295 15 6 1.7835 -4.6736 -0.8696 16 7 2.1858 -3.6128 0.0620 17 6 3.5577 -3.1642 -0.2104 18 6 4.4676 -4.3820 -0.3840 19 6 5.8967 -3.9146 -0.6672 20 6 6.5032 -4.2783 -2.0239 21 6 6.9857 -4.9857 -0.7561 22 1 -0.4849 0.8402 -0.0004 23 1 0.1182 -1.5799 1.5658 24 1 0.9436 -3.0682 2.0382 25 1 -1.4454 -2.9076 0.2477 26 1 -1.4649 -3.2816 1.9885 27 1 0.1421 -5.9398 -1.4424 28 1 -0.2184 -4.2059 -1.5012 29 1 2.3110 -5.5871 -0.5947 30 1 2.1106 -4.3869 -1.8690 31 1 3.5707 -2.5680 -1.1228 32 1 3.9148 -2.5599 0.6235 33 1 4.4548 -4.9782 0.5284 34 1 4.1107 -4.9863 -1.2179 35 1 6.1712 -2.9525 -0.2344 36 1 5.8839 -4.8501 -2.7150 37 1 7.1767 -3.5553 -2.4843 38 1 7.9767 -4.7281 -0.3822 39 1 6.6840 -6.0233 -0.6128 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259999176.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:32 Heat of formation + Delta-G solvation = 20.599554 kcal Electronic energy + Delta-G solvation = -17816.519870 eV Core-core repulsion = 15271.688466 eV Total energy + Delta-G solvation = -2544.831404 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.93191 -38.14936 -35.32414 -33.85958 -32.45560 -30.45376 -28.01326 -25.28384 -24.49632 -23.19819 -22.68424 -21.12306 -20.79227 -18.24227 -17.29433 -17.12987 -16.43582 -16.23471 -15.98799 -15.71973 -15.10949 -14.80552 -14.48890 -14.13042 -14.03612 -13.71205 -13.11879 -13.01955 -12.84147 -12.55743 -12.43661 -12.28042 -12.21657 -11.94879 -11.80811 -11.58928 -11.45945 -10.92710 -10.87877 -10.66203 -10.63867 -10.29188 -8.86466 -8.46470 -8.12155 -6.25289 0.99729 1.38110 1.40894 1.49325 1.71799 2.39954 2.96556 3.13901 3.33559 3.83122 3.97017 4.06782 4.12740 4.14850 4.19637 4.39935 4.44917 4.54131 4.61102 4.70278 4.81129 4.82516 4.87277 4.88692 4.96221 5.07452 5.12920 5.25710 5.28216 5.32031 5.43685 5.45961 5.56527 5.71523 5.90932 6.13913 6.43981 6.76691 6.94141 7.44934 8.91239 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.013054 B = 0.009702 C = 0.005904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.487341 B = 2885.458720 C = 4741.588892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.019 3.981 3 Si 0.949 3.051 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.075 0.925 9 C 0.221 3.779 10 H -0.018 1.018 11 C -0.096 4.096 12 C -0.038 4.038 13 S -0.282 6.282 14 C -0.075 4.075 15 C 0.061 3.939 16 N -0.529 5.529 17 C 0.085 3.915 18 C -0.081 4.081 19 C -0.166 4.166 20 C -0.182 4.182 21 C -0.167 4.167 22 H 0.260 0.740 23 H 0.059 0.941 24 H 0.043 0.957 25 H 0.061 0.939 26 H 0.099 0.901 27 H 0.128 0.872 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.024 0.976 31 H 0.018 0.982 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.788 -8.969 -2.253 11.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.181 4.181 3 Si 0.775 3.225 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.585 4.585 8 H 0.093 0.907 9 C 0.113 3.887 10 H 0.000 1.000 11 C -0.136 4.136 12 C -0.185 4.185 13 S -0.056 6.056 14 C -0.224 4.224 15 C -0.069 4.069 16 N -0.254 5.254 17 C -0.043 4.043 18 C -0.119 4.119 19 C -0.185 4.185 20 C -0.219 4.219 21 C -0.204 4.204 22 H 0.070 0.930 23 H 0.077 0.923 24 H 0.061 0.939 25 H 0.080 0.920 26 H 0.117 0.883 27 H 0.146 0.854 28 H 0.081 0.919 29 H 0.100 0.900 30 H 0.043 0.957 31 H 0.036 0.964 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.121 0.879 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.415 -9.957 -1.154 11.901 hybrid contribution 0.241 2.770 -1.567 3.192 sum 6.656 -7.187 -2.721 10.167 Atomic orbital electron populations 1.70063 1.06995 1.27187 1.50607 1.25653 0.95583 1.02050 0.94775 0.85694 0.78944 0.79885 0.77983 1.20549 1.21046 1.19288 1.22083 0.94269 0.91340 1.50811 0.90678 1.18855 0.90194 0.87773 0.91899 1.00029 1.20331 0.94046 0.99196 1.00056 1.22264 1.00684 0.91693 1.03880 1.86120 1.77634 1.15080 1.26797 1.23349 0.97600 1.05635 0.95824 1.22185 0.94064 0.96585 0.94033 1.62317 1.02594 1.10706 1.49736 1.21930 0.87950 0.95765 0.98634 1.21272 0.92017 0.97010 1.01574 1.22257 0.94143 1.00117 1.02003 1.23081 1.03964 1.03905 0.90915 1.23013 0.98585 0.97578 1.01247 0.93038 0.92262 0.93866 0.92042 0.88310 0.85359 0.91913 0.89998 0.95741 0.96395 0.92427 0.91355 0.91708 0.88701 0.88784 0.88438 0.87857 0.88203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.48 11.61 21.45 0.25 -50.23 16 2 C 0.02 1.04 5.06 84.66 0.43 1.47 16 3 Si 0.95 42.66 29.54 68.60 2.03 44.69 16 4 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.55 -28.86 7.50 25.60 0.19 -28.67 16 8 H 0.08 3.88 4.77 -2.91 -0.01 3.87 16 9 C 0.22 10.73 1.93 44.43 0.09 10.82 16 10 H -0.02 -0.96 6.06 -2.39 -0.01 -0.98 16 11 C -0.10 -4.55 4.34 28.41 0.12 -4.43 16 12 C -0.04 -1.56 6.15 69.79 0.43 -1.13 16 13 S -0.28 -10.29 21.84 -56.49 -1.23 -11.52 16 14 C -0.08 -2.54 5.61 72.19 0.40 -2.14 16 15 C 0.06 2.16 4.09 86.53 0.35 2.51 16 16 N -0.53 -21.95 4.22 -877.78 -3.71 -25.66 16 17 C 0.08 3.29 3.58 86.31 0.31 3.60 16 18 C -0.08 -2.41 4.81 30.59 0.15 -2.27 16 19 C -0.17 -4.35 5.74 -10.79 -0.06 -4.41 16 20 C -0.18 -4.03 10.18 30.59 0.31 -3.72 16 21 C -0.17 -3.43 10.25 30.59 0.31 -3.12 16 22 H 0.26 13.88 8.31 -92.70 -0.77 13.11 16 23 H 0.06 3.16 5.92 -2.39 -0.01 3.15 16 24 H 0.04 2.06 7.87 -2.39 -0.02 2.04 16 25 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 26 H 0.10 3.70 8.14 -2.38 -0.02 3.68 16 27 H 0.13 3.42 8.14 -2.50 -0.02 3.40 16 28 H 0.06 2.33 7.02 -2.51 -0.02 2.31 16 29 H 0.08 2.55 7.02 -2.39 -0.02 2.53 16 30 H 0.02 0.86 7.73 -2.39 -0.02 0.84 16 31 H 0.02 0.76 7.06 -2.39 -0.02 0.74 16 32 H 0.06 2.42 6.96 -2.39 -0.02 2.40 16 33 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 34 H 0.06 1.82 6.21 -2.39 -0.01 1.80 16 35 H 0.09 2.63 8.08 -2.38 -0.02 2.61 16 36 H 0.09 2.02 8.03 -2.39 -0.02 2.00 16 37 H 0.10 1.98 8.14 -2.38 -0.02 1.97 16 38 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 39 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -56.44 305.80 1.38 -55.06 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 1.01 Total: 19.15 kcal Atomic # 6 Polarization: -34.53 SS G_CDS: 3.04 Total: -31.49 kcal Atomic # 7 Polarization: -72.43 SS G_CDS: -3.46 Total: -75.89 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Atomic # 16 Polarization: -10.29 SS G_CDS: -1.23 Total: -11.52 kcal Total: -56.44 1.38 -55.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259999176.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.660 kcal (2) G-P(sol) polarization free energy of solvation -56.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds