Wall clock time and date at job start Mon Mar 30 2020 06:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00085 * 2 1 4 4 H 1.48499 * 109.46985 * 239.99387 * 3 2 1 5 5 H 1.48498 * 109.47121 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47343 * 119.99639 * 3 2 1 7 7 C 1.37875 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99929 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00478 * 0.02562 * 7 2 1 10 10 H 1.09008 * 110.06432 * 59.74292 * 9 7 2 11 11 C 1.53997 * 109.91589 * 298.54741 * 9 7 2 12 12 C 1.54599 * 105.13815 * 239.42059 * 11 9 7 13 13 C 1.54937 * 103.08133 * 337.95045 * 12 11 9 14 14 N 1.47896 * 109.92335 * 180.95533 * 9 7 2 15 15 C 1.46897 * 110.99782 * 265.19783 * 14 9 7 16 16 C 1.53000 * 109.47165 * 189.99769 * 15 14 9 17 17 H 1.08999 * 109.57601 * 59.99623 * 16 15 14 18 18 C 1.53103 * 109.57604 * 180.25731 * 16 15 14 19 19 C 1.52570 * 109.96325 * 182.69967 * 18 16 15 20 20 C 1.52585 * 110.83978 * 289.51553 * 19 18 16 21 21 C 1.53095 * 109.95483 * 70.63161 * 20 19 18 22 22 S 1.81745 * 108.83982 * 296.97136 * 21 20 19 23 23 H 0.97003 * 120.00034 * 0.02562 * 1 2 3 24 24 H 1.08999 * 110.31386 * 120.50419 * 11 9 7 25 25 H 1.09005 * 110.39145 * 358.37304 * 11 9 7 26 26 H 1.09002 * 110.72617 * 96.39862 * 12 11 9 27 27 H 1.08997 * 110.72339 * 219.50901 * 12 11 9 28 28 H 1.09000 * 110.66912 * 155.93889 * 13 12 11 29 29 H 1.09003 * 110.66687 * 279.06779 * 13 12 11 30 30 H 1.09003 * 109.47588 * 309.99588 * 15 14 9 31 31 H 1.09002 * 109.47510 * 69.99577 * 15 14 9 32 32 H 1.09002 * 109.39010 * 302.97727 * 18 16 15 33 33 H 1.08993 * 109.39263 * 62.68568 * 18 16 15 34 34 H 1.08998 * 109.20576 * 169.13372 * 19 18 16 35 35 H 1.09006 * 109.09746 * 49.82316 * 19 18 16 36 36 H 1.08995 * 109.39018 * 310.47593 * 20 19 18 37 37 H 1.09008 * 109.30399 * 190.72662 * 20 19 18 38 38 H 1.09009 * 109.57427 * 177.16288 * 21 20 19 39 39 H 1.09000 * 109.57958 * 56.78526 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6176 -2.5653 -0.8841 11 6 0.3891 -2.6073 1.2721 12 6 0.8905 -3.8797 1.9928 13 6 1.5585 -4.6885 0.8524 14 7 2.2031 -3.6307 0.0243 15 6 2.4744 -4.1190 -1.3343 16 6 3.2562 -5.4320 -1.2577 17 1 2.6706 -6.1746 -0.7158 18 6 3.5458 -5.9399 -2.6727 19 6 4.2668 -7.2828 -2.6067 20 6 5.6931 -7.1086 -2.0933 21 6 5.6726 -6.7509 -0.6049 22 16 4.8323 -5.1529 -0.3968 23 1 -0.4850 0.8401 -0.0004 24 1 -0.6633 -2.7119 1.0081 25 1 0.5345 -1.7318 1.9051 26 1 1.6187 -3.6252 2.7629 27 1 0.0559 -4.4345 2.4213 28 1 2.3036 -5.3755 1.2534 29 1 0.8089 -5.2276 0.2731 30 1 1.5317 -4.2874 -1.8549 31 1 3.0615 -3.3777 -1.8764 32 1 2.6071 -6.0572 -3.2143 33 1 4.1752 -5.2189 -3.1942 34 1 4.2952 -7.7239 -3.6031 35 1 3.7224 -7.9473 -1.9356 36 1 6.1833 -6.3105 -2.6507 37 1 6.2430 -8.0392 -2.2344 38 1 6.6946 -6.6774 -0.2329 39 1 5.1352 -7.5210 -0.0515 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260012512.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:25 Heat of formation + Delta-G solvation = -12.832456 kcal Electronic energy + Delta-G solvation = -17601.701642 eV Core-core repulsion = 15055.420517 eV Total energy + Delta-G solvation = -2546.281125 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.19594 -36.69691 -33.27364 -32.24659 -30.04354 -28.23826 -27.13804 -24.48598 -23.81422 -21.67931 -20.74344 -19.68242 -19.33165 -16.57451 -16.26514 -15.20849 -14.97489 -14.78356 -14.43416 -13.93579 -13.65450 -13.61298 -12.94288 -12.61817 -12.36243 -12.17820 -11.89238 -11.45622 -11.34867 -11.05969 -10.95475 -10.91272 -10.61407 -10.47352 -10.46020 -10.23143 -9.95231 -9.65852 -9.56971 -9.23353 -8.89741 -8.31065 -7.30032 -7.15821 -5.93816 -3.94547 2.06843 2.92842 3.39432 3.42639 3.47193 4.47634 4.60302 4.73088 4.78847 4.99827 5.20948 5.27751 5.31208 5.37838 5.49877 5.60715 5.69420 5.77332 5.82132 5.86209 5.92530 5.95271 6.01831 6.12431 6.17839 6.25646 6.34057 6.55679 6.65834 6.71370 7.09845 7.19610 7.37806 7.63414 7.95136 8.16172 8.25866 8.61551 9.12388 9.68920 11.15209 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.026920 B = 0.006036 C = 0.005550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.855591 B = 4637.405119 C = 5043.544585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.490 4.490 8 H 0.063 0.937 9 C 0.202 3.798 10 H 0.007 0.993 11 C -0.096 4.096 12 C -0.127 4.127 13 C 0.034 3.966 14 N -0.501 5.501 15 C 0.073 3.927 16 C -0.051 4.051 17 H 0.081 0.919 18 C -0.118 4.118 19 C -0.126 4.126 20 C -0.119 4.119 21 C -0.107 4.107 22 S -0.205 6.205 23 H 0.259 0.741 24 H 0.039 0.961 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.024 0.976 30 H 0.036 0.964 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.097 0.903 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.599 -14.419 -3.254 16.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.529 4.529 8 H 0.081 0.919 9 C 0.096 3.904 10 H 0.025 0.975 11 C -0.135 4.135 12 C -0.165 4.165 13 C -0.095 4.095 14 N -0.225 5.225 15 C -0.057 4.057 16 C -0.180 4.180 17 H 0.099 0.901 18 C -0.158 4.158 19 C -0.164 4.164 20 C -0.158 4.158 21 C -0.256 4.256 22 S 0.022 5.978 23 H 0.069 0.931 24 H 0.058 0.942 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.042 0.958 30 H 0.054 0.946 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.116 0.884 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.306 -13.193 -2.498 15.287 hybrid contribution -0.896 -0.459 -0.981 1.406 sum 6.410 -13.652 -3.480 15.478 Atomic orbital electron populations 1.69980 1.05852 1.26529 1.51320 1.24949 0.94846 0.99029 0.95673 0.86610 0.79450 0.82972 0.78671 1.20389 1.21553 1.20241 1.21071 0.93464 0.89172 1.49191 0.91859 1.19977 0.88606 0.88517 0.93323 0.97492 1.22288 0.97474 0.95500 0.98239 1.22520 0.98737 0.97694 0.97548 1.23227 0.95959 0.94876 0.95395 1.65022 1.43338 1.05519 1.08661 1.21994 0.97336 0.93248 0.93147 1.23415 0.96032 1.01271 0.97253 0.90069 1.21783 1.01115 0.97039 0.95875 1.21503 0.95803 0.97572 1.01511 1.21698 0.97193 1.02001 0.94927 1.23530 1.03595 0.99516 0.98946 1.87612 1.17791 1.18031 1.74381 0.93128 0.94245 0.91171 0.91829 0.93326 0.91401 0.95777 0.94600 0.89926 0.91116 0.90502 0.91466 0.92126 0.90726 0.91665 0.88417 0.90658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.03 12.36 55.43 0.68 -25.35 16 2 C 0.06 1.57 5.09 -17.82 -0.09 1.48 16 3 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.49 -13.79 8.69 -34.44 -0.30 -14.09 16 8 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 9 C 0.20 5.15 2.42 -67.80 -0.16 4.98 16 10 H 0.01 0.21 7.57 -51.92 -0.39 -0.19 16 11 C -0.10 -2.32 5.63 -25.37 -0.14 -2.46 16 12 C -0.13 -2.53 7.05 -24.87 -0.18 -2.70 16 13 C 0.03 0.64 5.13 -1.63 -0.01 0.63 16 14 N -0.50 -10.89 4.57 -223.53 -1.02 -11.91 16 15 C 0.07 1.37 4.49 -3.83 -0.02 1.36 16 16 C -0.05 -0.77 2.14 -26.68 -0.06 -0.82 16 17 H 0.08 1.21 6.80 -51.93 -0.35 0.86 16 18 C -0.12 -1.45 5.05 -26.90 -0.14 -1.59 16 19 C -0.13 -1.28 5.61 -27.16 -0.15 -1.43 16 20 C -0.12 -1.19 5.75 -26.89 -0.15 -1.34 16 21 C -0.11 -1.23 6.45 37.21 0.24 -0.99 16 22 S -0.20 -3.26 21.30 -107.50 -2.29 -5.55 16 23 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 24 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.07 1.86 7.26 -51.93 -0.38 1.49 16 26 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.07 1.21 7.68 -51.93 -0.40 0.81 16 29 H 0.02 0.44 8.01 -51.93 -0.42 0.02 16 30 H 0.04 0.68 7.81 -51.93 -0.41 0.27 16 31 H 0.08 1.69 8.14 -51.93 -0.42 1.26 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 0.98 8.06 -51.93 -0.42 0.56 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 36 H 0.07 0.78 8.06 -51.93 -0.42 0.37 16 37 H 0.06 0.54 8.14 -51.92 -0.42 0.11 16 38 H 0.10 1.03 8.14 -51.92 -0.42 0.60 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 311.31 15.07 4.69 4.69 Total: -1.00 -29.05 311.31 -11.06 -40.12 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -6.95 Total: -1.92 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: -1.16 Total: -16.97 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: -0.34 Total: -37.26 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: -3.26 SS G_CDS: -2.29 Total: -5.55 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.05 -11.06 -40.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260012512.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.286 kcal (2) G-P(sol) polarization free energy of solvation -29.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds