Wall clock time and date at job start Mon Mar 30 2020 06:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00085 * 2 1 4 4 H 1.48499 * 109.46985 * 239.99387 * 3 2 1 5 5 H 1.48498 * 109.47121 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47343 * 119.99639 * 3 2 1 7 7 C 1.37875 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99929 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00478 * 0.02562 * 7 2 1 10 10 H 1.09008 * 110.06432 * 59.74292 * 9 7 2 11 11 C 1.53997 * 109.91589 * 298.54741 * 9 7 2 12 12 C 1.54599 * 105.13815 * 239.42059 * 11 9 7 13 13 C 1.54937 * 103.08133 * 337.95045 * 12 11 9 14 14 N 1.47896 * 109.92335 * 180.95533 * 9 7 2 15 15 C 1.46897 * 110.99782 * 265.19783 * 14 9 7 16 16 C 1.53000 * 109.47165 * 189.99769 * 15 14 9 17 17 H 1.08999 * 109.57601 * 59.99623 * 16 15 14 18 18 C 1.53103 * 109.57604 * 180.25731 * 16 15 14 19 19 C 1.52570 * 109.96325 * 182.69967 * 18 16 15 20 20 C 1.52585 * 110.83978 * 289.51553 * 19 18 16 21 21 C 1.53095 * 109.95483 * 70.63161 * 20 19 18 22 22 S 1.81745 * 108.83982 * 296.97136 * 21 20 19 23 23 H 0.97003 * 120.00034 * 0.02562 * 1 2 3 24 24 H 1.08999 * 110.31386 * 120.50419 * 11 9 7 25 25 H 1.09005 * 110.39145 * 358.37304 * 11 9 7 26 26 H 1.09002 * 110.72617 * 96.39862 * 12 11 9 27 27 H 1.08997 * 110.72339 * 219.50901 * 12 11 9 28 28 H 1.09000 * 110.66912 * 155.93889 * 13 12 11 29 29 H 1.09003 * 110.66687 * 279.06779 * 13 12 11 30 30 H 1.09003 * 109.47588 * 309.99588 * 15 14 9 31 31 H 1.09002 * 109.47510 * 69.99577 * 15 14 9 32 32 H 1.09002 * 109.39010 * 302.97727 * 18 16 15 33 33 H 1.08993 * 109.39263 * 62.68568 * 18 16 15 34 34 H 1.08998 * 109.20576 * 169.13372 * 19 18 16 35 35 H 1.09006 * 109.09746 * 49.82316 * 19 18 16 36 36 H 1.08995 * 109.39018 * 310.47593 * 20 19 18 37 37 H 1.09008 * 109.30399 * 190.72662 * 20 19 18 38 38 H 1.09009 * 109.57427 * 177.16288 * 21 20 19 39 39 H 1.09000 * 109.57958 * 56.78526 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6176 -2.5653 -0.8841 11 6 0.3891 -2.6073 1.2721 12 6 0.8905 -3.8797 1.9928 13 6 1.5585 -4.6885 0.8524 14 7 2.2031 -3.6307 0.0243 15 6 2.4744 -4.1190 -1.3343 16 6 3.2562 -5.4320 -1.2577 17 1 2.6706 -6.1746 -0.7158 18 6 3.5458 -5.9399 -2.6727 19 6 4.2668 -7.2828 -2.6067 20 6 5.6931 -7.1086 -2.0933 21 6 5.6726 -6.7509 -0.6049 22 16 4.8323 -5.1529 -0.3968 23 1 -0.4850 0.8401 -0.0004 24 1 -0.6633 -2.7119 1.0081 25 1 0.5345 -1.7318 1.9051 26 1 1.6187 -3.6252 2.7629 27 1 0.0559 -4.4345 2.4213 28 1 2.3036 -5.3755 1.2534 29 1 0.8089 -5.2276 0.2731 30 1 1.5317 -4.2874 -1.8549 31 1 3.0615 -3.3777 -1.8764 32 1 2.6071 -6.0572 -3.2143 33 1 4.1752 -5.2189 -3.1942 34 1 4.2952 -7.7239 -3.6031 35 1 3.7224 -7.9473 -1.9356 36 1 6.1833 -6.3105 -2.6507 37 1 6.2430 -8.0392 -2.2344 38 1 6.6946 -6.6774 -0.2329 39 1 5.1352 -7.5210 -0.0515 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260012512.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:24 Heat of formation + Delta-G solvation = -29.188656 kcal Electronic energy + Delta-G solvation = -17602.410900 eV Core-core repulsion = 15055.420517 eV Total energy + Delta-G solvation = -2546.990383 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.84899 -37.74669 -34.97263 -34.00100 -31.38271 -30.09586 -28.36952 -26.40002 -25.17224 -23.02284 -21.72384 -21.24803 -21.17435 -18.34636 -17.72463 -16.81415 -16.71873 -15.94517 -15.90483 -15.50030 -14.85299 -14.67430 -14.42314 -14.17876 -13.78081 -13.62650 -13.36021 -12.97500 -12.83333 -12.61098 -12.46867 -12.32607 -12.20943 -12.02576 -11.81257 -11.65970 -11.63677 -11.46545 -11.17604 -10.91298 -10.47088 -10.34691 -9.01190 -8.44949 -8.11192 -6.19558 0.93616 1.40537 1.42537 1.50473 1.84241 2.43100 3.17337 3.31759 3.70962 3.84909 3.93376 4.05094 4.14182 4.19296 4.25856 4.31384 4.44539 4.50053 4.62005 4.66908 4.74171 4.77142 4.90537 4.94370 5.00162 5.02295 5.10012 5.13186 5.17748 5.30045 5.31316 5.39122 5.46871 5.68683 5.74804 6.19479 6.48598 6.58950 6.91557 7.47863 8.96338 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.026920 B = 0.006036 C = 0.005550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.855591 B = 4637.405119 C = 5043.544585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.011 3.989 3 Si 0.955 3.045 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.508 4.508 8 H 0.047 0.953 9 C 0.203 3.797 10 H -0.027 1.027 11 C -0.091 4.091 12 C -0.117 4.117 13 C 0.040 3.960 14 N -0.512 5.512 15 C 0.075 3.925 16 C -0.030 4.030 17 H 0.089 0.911 18 C -0.116 4.116 19 C -0.121 4.121 20 C -0.117 4.117 21 C -0.087 4.087 22 S -0.281 6.281 23 H 0.261 0.739 24 H 0.029 0.971 25 H 0.038 0.962 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.037 0.963 30 H 0.033 0.967 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.603 -16.588 -3.348 18.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.187 4.187 3 Si 0.781 3.219 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.199 1.199 7 C -0.546 4.546 8 H 0.066 0.934 9 C 0.096 3.904 10 H -0.009 1.009 11 C -0.130 4.130 12 C -0.155 4.155 13 C -0.087 4.087 14 N -0.237 5.237 15 C -0.055 4.055 16 C -0.159 4.159 17 H 0.107 0.893 18 C -0.156 4.156 19 C -0.159 4.159 20 C -0.156 4.156 21 C -0.235 4.235 22 S -0.055 6.055 23 H 0.070 0.930 24 H 0.048 0.952 25 H 0.057 0.943 26 H 0.081 0.919 27 H 0.099 0.901 28 H 0.106 0.894 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.112 0.888 38 H 0.127 0.873 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.318 -15.380 -2.595 17.677 hybrid contribution -1.182 0.183 -0.970 1.540 sum 7.136 -15.197 -3.565 17.164 Atomic orbital electron populations 1.70085 1.07036 1.27294 1.51811 1.25672 0.95675 1.02164 0.95222 0.85654 0.78359 0.79153 0.78724 1.19938 1.20680 1.19863 1.21285 0.92870 0.90976 1.49500 0.93434 1.19783 0.88770 0.89356 0.92468 1.00940 1.22085 0.96788 0.96551 0.97602 1.22483 0.99756 0.95805 0.97478 1.23256 0.96568 0.94261 0.94628 1.64911 1.42359 1.05793 1.10598 1.21932 0.97389 0.94691 0.91453 1.23233 0.94783 0.98799 0.99121 0.89301 1.21782 1.01790 0.98280 0.93742 1.21488 0.95492 0.95928 1.02969 1.21696 0.97440 1.03026 0.93412 1.23581 1.03334 0.96058 1.00508 1.87826 1.19639 1.22982 1.75060 0.93048 0.95187 0.94323 0.91888 0.90135 0.89418 0.94481 0.94908 0.92532 0.90284 0.91460 0.89404 0.91445 0.91529 0.88808 0.87311 0.89470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.95 12.36 21.45 0.27 -54.69 16 2 C 0.01 0.64 5.09 84.65 0.43 1.07 16 3 Si 0.96 45.81 29.54 68.60 2.03 47.84 16 4 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 7 C -0.51 -29.62 8.69 25.60 0.22 -29.40 16 8 H 0.05 2.86 7.81 -2.91 -0.02 2.83 16 9 C 0.20 10.75 2.42 44.31 0.11 10.85 16 10 H -0.03 -1.57 7.57 -2.38 -0.02 -1.59 16 11 C -0.09 -4.50 5.63 31.48 0.18 -4.32 16 12 C -0.12 -4.54 7.05 31.80 0.22 -4.31 16 13 C 0.04 1.49 5.13 86.56 0.44 1.93 16 14 N -0.51 -22.60 4.57 -861.13 -3.94 -26.54 16 15 C 0.07 2.89 4.49 86.30 0.39 3.28 16 16 C -0.03 -0.89 2.14 30.63 0.07 -0.82 16 17 H 0.09 2.46 6.80 -2.39 -0.02 2.44 16 18 C -0.12 -2.66 5.05 30.49 0.15 -2.50 16 19 C -0.12 -2.04 5.61 30.31 0.17 -1.87 16 20 C -0.12 -1.93 5.75 30.49 0.18 -1.75 16 21 C -0.09 -1.75 6.45 72.01 0.46 -1.28 16 22 S -0.28 -8.74 21.30 -56.49 -1.20 -9.95 16 23 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 24 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.04 2.11 7.26 -2.38 -0.02 2.09 16 26 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 27 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 28 H 0.09 2.91 7.68 -2.39 -0.02 2.89 16 29 H 0.04 1.27 8.01 -2.39 -0.02 1.25 16 30 H 0.03 1.27 7.81 -2.39 -0.02 1.25 16 31 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.07 1.66 8.06 -2.39 -0.02 1.65 16 34 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.07 1.08 8.08 -2.38 -0.02 1.06 16 36 H 0.07 1.24 8.06 -2.39 -0.02 1.22 16 37 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 38 H 0.11 1.97 8.14 -2.38 -0.02 1.95 16 39 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -64.89 311.31 1.16 -63.73 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: 0.99 Total: 8.73 kcal Atomic # 6 Polarization: -32.15 SS G_CDS: 3.02 Total: -29.13 kcal Atomic # 7 Polarization: -77.55 SS G_CDS: -3.67 Total: -81.22 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Atomic # 16 Polarization: -8.74 SS G_CDS: -1.20 Total: -9.95 kcal Total: -64.89 1.16 -63.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260012512.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.541 kcal (2) G-P(sol) polarization free energy of solvation -64.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds