Wall clock time and date at job start Mon Mar 30 2020 06:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99962 * 2 1 4 4 H 1.48499 * 109.46987 * 270.00174 * 3 2 1 5 5 H 1.48502 * 109.46832 * 30.00354 * 3 2 1 6 6 H 1.48500 * 109.46828 * 150.00039 * 3 2 1 7 7 C 1.37880 * 120.00197 * 180.02562 * 2 1 3 8 8 H 1.07988 * 119.99961 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99685 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.72954 * 51.49333 * 9 7 2 11 11 C 1.54935 * 110.66801 * 288.39832 * 9 7 2 12 12 C 1.54601 * 102.92337 * 204.14976 * 11 9 7 13 13 C 1.54000 * 105.13751 * 21.95871 * 12 11 9 14 14 N 1.47903 * 107.05752 * 1.22459 * 13 12 11 15 15 C 1.46905 * 110.99969 * 214.15939 * 14 13 12 16 16 C 1.52997 * 109.47016 * 177.23088 * 15 14 13 17 17 H 1.08996 * 109.68252 * 303.13003 * 16 15 14 18 18 C 1.53100 * 109.57502 * 182.80733 * 16 15 14 19 19 C 1.52580 * 109.95725 * 177.16746 * 18 16 15 20 20 C 1.52577 * 110.72426 * 70.67765 * 19 18 16 21 21 C 1.53094 * 109.95910 * 289.32300 * 20 19 18 22 22 S 1.81747 * 109.57713 * 63.45704 * 16 15 14 23 23 H 0.97005 * 119.99891 * 359.97438 * 1 2 3 24 24 H 1.08999 * 110.72521 * 85.79841 * 11 9 7 25 25 H 1.09000 * 110.72522 * 322.50669 * 11 9 7 26 26 H 1.08998 * 110.31030 * 263.04146 * 12 11 9 27 27 H 1.08996 * 110.30810 * 140.87267 * 12 11 9 28 28 H 1.09002 * 109.91784 * 241.87203 * 13 12 11 29 29 H 1.08998 * 109.91633 * 120.57785 * 13 12 11 30 30 H 1.09000 * 109.46966 * 57.22697 * 15 14 13 31 31 H 1.08999 * 109.46691 * 297.22712 * 15 14 13 32 32 H 1.09004 * 109.38388 * 57.02019 * 18 16 15 33 33 H 1.08995 * 109.30974 * 297.26961 * 18 16 15 34 34 H 1.08997 * 109.22533 * 191.00313 * 19 18 16 35 35 H 1.08999 * 109.22556 * 310.35898 * 19 18 16 36 36 H 1.08997 * 109.39229 * 49.47478 * 20 19 18 37 37 H 1.09004 * 109.38916 * 169.17573 * 20 19 18 38 38 H 1.09000 * 109.57987 * 303.22157 * 21 20 19 39 39 H 1.09000 * 109.58186 * 182.82876 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.5082 -2.5157 -0.7980 11 6 0.5819 -2.7442 1.3752 12 6 0.4285 -4.2820 1.4160 13 6 1.4694 -4.8167 0.4149 14 7 2.1871 -3.6449 -0.1322 15 6 2.5577 -3.8632 -1.5368 16 6 3.2350 -2.6064 -2.0868 17 1 2.5705 -1.7503 -1.9700 18 6 3.5592 -2.8056 -3.5697 19 6 4.1713 -1.5316 -4.1447 20 6 5.5791 -1.3147 -3.5981 21 6 5.5113 -0.9263 -2.1188 22 16 4.7826 -2.3037 -1.1833 23 1 -0.4850 0.8401 0.0004 24 1 -0.3925 -2.2581 1.4223 25 1 1.2258 -2.3993 2.1842 26 1 -0.5763 -4.5703 1.1071 27 1 0.6394 -4.6568 2.4175 28 1 0.9685 -5.3544 -0.3901 29 1 2.1708 -5.4766 0.9256 30 1 1.6620 -4.0780 -2.1197 31 1 3.2458 -4.7058 -1.6042 32 1 2.6437 -3.0437 -4.1114 33 1 4.2671 -3.6274 -3.6767 34 1 4.2164 -1.6136 -5.2306 35 1 3.5465 -0.6800 -3.8754 36 1 6.1545 -2.2342 -3.7048 37 1 6.0664 -0.5175 -4.1595 38 1 4.8911 -0.0375 -2.0025 39 1 6.5160 -0.7240 -1.7477 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260012517.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:26 Heat of formation + Delta-G solvation = -10.141464 kcal Electronic energy + Delta-G solvation = -18234.293257 eV Core-core repulsion = 15688.128822 eV Total energy + Delta-G solvation = -2546.164435 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.17158 -36.37607 -32.82826 -32.52941 -29.85615 -28.25318 -26.98061 -24.47858 -23.66970 -21.21504 -20.47515 -19.61896 -19.34105 -16.43314 -16.18314 -15.07824 -14.68757 -14.55781 -14.24902 -13.96926 -13.35486 -13.29390 -12.89895 -12.40013 -12.17368 -12.08390 -11.70809 -11.31571 -11.14012 -11.01299 -10.89623 -10.66949 -10.56403 -10.45096 -10.35073 -10.05670 -9.84920 -9.56972 -9.48656 -8.94250 -8.84410 -8.34591 -7.30759 -6.51094 -5.96034 -3.91301 2.52943 3.30603 3.36998 3.40197 3.46415 4.46604 4.87779 5.06034 5.08572 5.27198 5.33670 5.51685 5.62373 5.67579 5.72379 5.79969 5.89558 5.98188 6.09105 6.10835 6.13026 6.20211 6.22827 6.29583 6.33503 6.37461 6.49205 6.57528 6.66332 6.98992 7.11211 7.17415 7.41203 7.58329 7.97973 8.12892 8.25603 8.61663 9.24640 9.69577 11.14532 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.016128 B = 0.011672 C = 0.007869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.744884 B = 2398.389396 C = 3557.502727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.881 3.119 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.269 1.269 7 C -0.498 4.498 8 H 0.098 0.902 9 C 0.202 3.798 10 H 0.012 0.988 11 C -0.103 4.103 12 C -0.136 4.136 13 C 0.039 3.961 14 N -0.510 5.510 15 C 0.080 3.920 16 C -0.054 4.054 17 H 0.132 0.868 18 C -0.116 4.116 19 C -0.127 4.127 20 C -0.116 4.116 21 C -0.103 4.103 22 S -0.216 6.216 23 H 0.257 0.743 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.025 0.975 29 H 0.061 0.939 30 H 0.031 0.969 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.078 0.922 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.238 -5.046 -5.964 9.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.144 4.144 3 Si 0.709 3.291 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.193 1.193 7 C -0.538 4.538 8 H 0.116 0.884 9 C 0.096 3.904 10 H 0.030 0.970 11 C -0.142 4.142 12 C -0.174 4.174 13 C -0.090 4.090 14 N -0.235 5.235 15 C -0.050 4.050 16 C -0.182 4.182 17 H 0.150 0.850 18 C -0.156 4.156 19 C -0.165 4.165 20 C -0.155 4.155 21 C -0.251 4.251 22 S 0.012 5.988 23 H 0.067 0.933 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.044 0.956 29 H 0.079 0.921 30 H 0.049 0.951 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.992 -5.352 -4.756 10.007 hybrid contribution -0.999 1.441 -1.507 2.312 sum 5.993 -3.910 -6.263 9.510 Atomic orbital electron populations 1.69981 1.05926 1.26271 1.51618 1.24971 0.94650 0.98869 0.95895 0.86738 0.80457 0.83928 0.77945 1.21055 1.21532 1.19305 1.21754 0.95671 0.88545 1.47785 0.88411 1.20377 0.89010 0.88459 0.92514 0.97011 1.22446 1.00802 0.90662 1.00308 1.22467 0.97311 0.99514 0.98116 1.22722 0.95192 0.94181 0.96856 1.64889 1.40257 1.03768 1.14552 1.21812 0.97451 0.95289 0.90432 1.23689 0.96920 1.04196 0.93440 0.85035 1.21788 1.00692 0.97729 0.95384 1.21488 0.96362 0.98805 0.99834 1.21682 0.97378 1.01600 0.94818 1.23447 1.03455 1.00871 0.97344 1.86803 1.23110 1.43938 1.44936 0.93326 0.91722 0.92452 0.93163 0.92799 0.95630 0.92103 0.95101 0.92113 0.91635 0.91650 0.91967 0.91529 0.91207 0.91967 0.90312 0.88873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.39 12.85 55.43 0.71 -24.68 16 2 C 0.06 1.54 5.40 -17.82 -0.10 1.44 16 3 Si 0.88 21.17 29.54 -169.99 -5.02 16.14 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.50 -13.04 5.85 -34.44 -0.20 -13.24 16 8 H 0.10 2.56 4.87 -50.42 -0.25 2.31 16 9 C 0.20 4.96 1.80 -66.94 -0.12 4.84 16 10 H 0.01 0.33 7.99 -51.93 -0.41 -0.08 16 11 C -0.10 -2.42 6.15 -24.87 -0.15 -2.57 16 12 C -0.14 -2.62 6.93 -25.37 -0.18 -2.79 16 13 C 0.04 0.74 6.70 -2.75 -0.02 0.72 16 14 N -0.51 -10.98 4.76 -223.98 -1.07 -12.05 16 15 C 0.08 1.53 4.22 -3.82 -0.02 1.52 16 16 C -0.05 -1.02 1.92 -26.68 -0.05 -1.07 16 17 H 0.13 2.99 5.32 -51.93 -0.28 2.71 16 18 C -0.12 -1.77 5.04 -26.89 -0.14 -1.91 16 19 C -0.13 -1.80 5.61 -27.16 -0.15 -1.95 16 20 C -0.12 -1.55 5.75 -26.90 -0.15 -1.71 16 21 C -0.10 -1.65 6.46 37.21 0.24 -1.41 16 22 S -0.22 -4.12 19.04 -107.50 -2.05 -6.17 16 23 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 24 H 0.06 1.61 7.96 -51.93 -0.41 1.20 16 25 H 0.06 1.40 8.05 -51.93 -0.42 0.98 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.03 0.45 7.69 -51.93 -0.40 0.05 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.03 0.59 7.99 -51.93 -0.41 0.17 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.93 8.05 -51.93 -0.42 0.51 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.07 1.06 8.08 -51.93 -0.42 0.64 16 36 H 0.07 0.89 8.06 -51.93 -0.42 0.48 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 304.97 15.07 4.60 4.60 Total: -1.00 -27.59 304.97 -10.64 -38.23 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -6.78 Total: 2.05 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: -1.04 Total: -18.13 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: -0.35 Total: -36.72 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -4.12 SS G_CDS: -2.05 Total: -6.17 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.59 -10.64 -38.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260012517.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.091 kcal (2) G-P(sol) polarization free energy of solvation -27.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds