Wall clock time and date at job start Mon Mar 30 2020 06:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99962 * 2 1 4 4 H 1.48499 * 109.46987 * 270.00174 * 3 2 1 5 5 H 1.48502 * 109.46832 * 30.00354 * 3 2 1 6 6 H 1.48500 * 109.46828 * 150.00039 * 3 2 1 7 7 C 1.37880 * 120.00197 * 180.02562 * 2 1 3 8 8 H 1.07988 * 119.99961 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99685 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.72954 * 51.49333 * 9 7 2 11 11 C 1.54935 * 110.66801 * 288.39832 * 9 7 2 12 12 C 1.54601 * 102.92337 * 204.14976 * 11 9 7 13 13 C 1.54000 * 105.13751 * 21.95871 * 12 11 9 14 14 N 1.47903 * 107.05752 * 1.22459 * 13 12 11 15 15 C 1.46905 * 110.99969 * 214.15939 * 14 13 12 16 16 C 1.52997 * 109.47016 * 177.23088 * 15 14 13 17 17 H 1.08996 * 109.68252 * 303.13003 * 16 15 14 18 18 C 1.53100 * 109.57502 * 182.80733 * 16 15 14 19 19 C 1.52580 * 109.95725 * 177.16746 * 18 16 15 20 20 C 1.52577 * 110.72426 * 70.67765 * 19 18 16 21 21 C 1.53094 * 109.95910 * 289.32300 * 20 19 18 22 22 S 1.81747 * 109.57713 * 63.45704 * 16 15 14 23 23 H 0.97005 * 119.99891 * 359.97438 * 1 2 3 24 24 H 1.08999 * 110.72521 * 85.79841 * 11 9 7 25 25 H 1.09000 * 110.72522 * 322.50669 * 11 9 7 26 26 H 1.08998 * 110.31030 * 263.04146 * 12 11 9 27 27 H 1.08996 * 110.30810 * 140.87267 * 12 11 9 28 28 H 1.09002 * 109.91784 * 241.87203 * 13 12 11 29 29 H 1.08998 * 109.91633 * 120.57785 * 13 12 11 30 30 H 1.09000 * 109.46966 * 57.22697 * 15 14 13 31 31 H 1.08999 * 109.46691 * 297.22712 * 15 14 13 32 32 H 1.09004 * 109.38388 * 57.02019 * 18 16 15 33 33 H 1.08995 * 109.30974 * 297.26961 * 18 16 15 34 34 H 1.08997 * 109.22533 * 191.00313 * 19 18 16 35 35 H 1.08999 * 109.22556 * 310.35898 * 19 18 16 36 36 H 1.08997 * 109.39229 * 49.47478 * 20 19 18 37 37 H 1.09004 * 109.38916 * 169.17573 * 20 19 18 38 38 H 1.09000 * 109.57987 * 303.22157 * 21 20 19 39 39 H 1.09000 * 109.58186 * 182.82876 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.5082 -2.5157 -0.7980 11 6 0.5819 -2.7442 1.3752 12 6 0.4285 -4.2820 1.4160 13 6 1.4694 -4.8167 0.4149 14 7 2.1871 -3.6449 -0.1322 15 6 2.5577 -3.8632 -1.5368 16 6 3.2350 -2.6064 -2.0868 17 1 2.5705 -1.7503 -1.9700 18 6 3.5592 -2.8056 -3.5697 19 6 4.1713 -1.5316 -4.1447 20 6 5.5791 -1.3147 -3.5981 21 6 5.5113 -0.9263 -2.1188 22 16 4.7826 -2.3037 -1.1833 23 1 -0.4850 0.8401 0.0004 24 1 -0.3925 -2.2581 1.4223 25 1 1.2258 -2.3993 2.1842 26 1 -0.5763 -4.5703 1.1071 27 1 0.6394 -4.6568 2.4175 28 1 0.9685 -5.3544 -0.3901 29 1 2.1708 -5.4766 0.9256 30 1 1.6620 -4.0780 -2.1197 31 1 3.2458 -4.7058 -1.6042 32 1 2.6437 -3.0437 -4.1114 33 1 4.2671 -3.6274 -3.6767 34 1 4.2164 -1.6136 -5.2306 35 1 3.5465 -0.6800 -3.8754 36 1 6.1545 -2.2342 -3.7048 37 1 6.0664 -0.5175 -4.1595 38 1 4.8911 -0.0375 -2.0025 39 1 6.5160 -0.7240 -1.7477 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260012517.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:26 Heat of formation + Delta-G solvation = -25.367872 kcal Electronic energy + Delta-G solvation = -18234.953524 eV Core-core repulsion = 15688.128822 eV Total energy + Delta-G solvation = -2546.824702 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.84449 -37.63590 -34.62189 -34.22849 -31.30370 -30.12689 -28.37505 -26.34512 -25.11541 -22.74321 -21.78672 -21.16873 -21.08979 -18.40264 -17.60136 -16.72692 -16.53429 -15.94572 -15.79720 -15.49610 -14.84431 -14.61146 -14.40322 -14.07969 -13.77314 -13.51639 -13.31193 -12.91018 -12.82457 -12.66154 -12.53944 -12.31113 -12.08565 -11.88174 -11.82757 -11.71900 -11.42721 -11.29809 -11.07811 -10.84886 -10.42102 -10.29059 -9.01293 -8.08244 -8.01714 -6.02698 1.12394 1.36149 1.40879 1.51193 1.96056 2.46420 3.25875 3.38711 3.83542 3.92462 3.95166 4.12520 4.21070 4.26871 4.31600 4.43427 4.47049 4.60686 4.64585 4.74798 4.77600 4.84615 4.91722 4.97242 5.05224 5.05927 5.12292 5.18462 5.21341 5.31041 5.38440 5.49633 5.55687 5.67446 5.93966 6.25546 6.48254 6.68597 7.15868 7.60304 9.06129 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.016128 B = 0.011672 C = 0.007869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.744884 B = 2398.389396 C = 3557.502727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.010 3.990 3 Si 0.932 3.068 4 H -0.277 1.277 5 H -0.292 1.292 6 H -0.266 1.266 7 C -0.492 4.492 8 H 0.097 0.903 9 C 0.208 3.792 10 H -0.024 1.024 11 C -0.103 4.103 12 C -0.126 4.126 13 C 0.037 3.963 14 N -0.521 5.521 15 C 0.080 3.920 16 C -0.046 4.046 17 H 0.088 0.912 18 C -0.110 4.110 19 C -0.127 4.127 20 C -0.109 4.109 21 C -0.095 4.095 22 S -0.260 6.260 23 H 0.254 0.746 24 H 0.039 0.961 25 H 0.040 0.960 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.040 0.960 29 H 0.081 0.919 30 H 0.031 0.969 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.041 0.959 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.057 0.943 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.984 -6.142 -7.033 12.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.188 4.188 3 Si 0.759 3.241 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.191 1.191 7 C -0.532 4.532 8 H 0.115 0.885 9 C 0.101 3.899 10 H -0.006 1.006 11 C -0.142 4.142 12 C -0.164 4.164 13 C -0.091 4.091 14 N -0.246 5.246 15 C -0.050 4.050 16 C -0.174 4.174 17 H 0.106 0.894 18 C -0.150 4.150 19 C -0.165 4.165 20 C -0.148 4.148 21 C -0.243 4.243 22 S -0.032 6.032 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.080 0.920 27 H 0.095 0.905 28 H 0.059 0.941 29 H 0.099 0.901 30 H 0.049 0.951 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.109 0.891 35 H 0.060 0.940 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.076 0.924 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 8.755 -6.460 -5.832 12.344 hybrid contribution -1.510 1.754 -1.180 2.598 sum 7.245 -4.706 -7.012 11.126 Atomic orbital electron populations 1.70100 1.07109 1.26528 1.53534 1.25584 0.95245 1.01599 0.96328 0.85930 0.79293 0.80794 0.78100 1.20317 1.21800 1.19073 1.22009 0.95732 0.89461 1.45969 0.88510 1.20122 0.88665 0.89357 0.91770 1.00634 1.22272 0.98854 0.93984 0.99066 1.22415 0.98353 0.95881 0.99770 1.22831 0.95492 0.93511 0.97238 1.64830 1.39568 1.03835 1.16343 1.21894 0.97815 0.96134 0.89144 1.23503 0.95770 1.02193 0.95981 0.89437 1.21760 1.01574 0.99052 0.92615 1.21508 0.96299 0.97082 1.01588 1.21660 0.97190 1.03130 0.92782 1.23531 1.03462 0.98304 0.99005 1.86807 1.23508 1.45583 1.47303 0.93709 0.94216 0.94119 0.91953 0.90525 0.94126 0.90068 0.95097 0.90123 0.91060 0.89859 0.89072 0.94026 0.89810 0.89416 0.92423 0.86979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.60 12.85 21.45 0.28 -54.32 16 2 C 0.01 0.53 5.40 84.66 0.46 0.99 16 3 Si 0.93 44.45 29.54 68.60 2.03 46.48 16 4 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 5 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 6 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.49 -26.47 5.85 25.60 0.15 -26.32 16 8 H 0.10 5.17 4.87 -4.23 -0.02 5.15 16 9 C 0.21 10.42 1.80 44.51 0.08 10.50 16 10 H -0.02 -1.36 7.99 -2.39 -0.02 -1.38 16 11 C -0.10 -4.90 6.15 31.80 0.20 -4.71 16 12 C -0.13 -4.69 6.93 31.48 0.22 -4.47 16 13 C 0.04 1.34 6.70 86.45 0.58 1.92 16 14 N -0.52 -22.17 4.76 -862.55 -4.10 -26.27 16 15 C 0.08 2.97 4.22 86.30 0.36 3.34 16 16 C -0.05 -1.71 1.92 30.63 0.06 -1.65 16 17 H 0.09 4.09 5.32 -2.39 -0.01 4.07 16 18 C -0.11 -3.16 5.04 30.49 0.15 -3.00 16 19 C -0.13 -3.31 5.61 30.31 0.17 -3.14 16 20 C -0.11 -2.58 5.75 30.49 0.18 -2.41 16 21 C -0.09 -2.88 6.46 72.01 0.46 -2.41 16 22 S -0.26 -9.68 19.04 -56.49 -1.08 -10.76 16 23 H 0.25 14.40 8.31 -92.70 -0.77 13.63 16 24 H 0.04 2.05 7.96 -2.39 -0.02 2.03 16 25 H 0.04 2.03 8.05 -2.39 -0.02 2.01 16 26 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 28 H 0.04 1.34 7.69 -2.39 -0.02 1.32 16 29 H 0.08 2.61 8.14 -2.39 -0.02 2.60 16 30 H 0.03 1.15 7.99 -2.39 -0.02 1.13 16 31 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.07 1.94 8.14 -2.38 -0.02 1.93 16 33 H 0.08 2.11 8.05 -2.39 -0.02 2.09 16 34 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.04 1.29 8.08 -2.39 -0.02 1.27 16 36 H 0.08 1.81 8.06 -2.39 -0.02 1.79 16 37 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 38 H 0.06 1.98 8.14 -2.39 -0.02 1.97 16 39 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 Total: -1.00 -61.16 304.97 1.18 -59.98 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.99 Total: 16.26 kcal Atomic # 6 Polarization: -34.43 SS G_CDS: 3.07 Total: -31.36 kcal Atomic # 7 Polarization: -76.77 SS G_CDS: -3.83 Total: -80.60 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: -9.68 SS G_CDS: -1.08 Total: -10.76 kcal Total: -61.16 1.18 -59.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260012517.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.613 kcal (2) G-P(sol) polarization free energy of solvation -61.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds