Wall clock time and date at job start Mon Mar 30 2020 06:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99896 * 2 1 4 4 H 1.48505 * 109.47017 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47243 * 300.00036 * 3 2 1 6 6 H 1.48496 * 109.47277 * 60.00282 * 3 2 1 7 7 C 1.37878 * 120.00222 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00415 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99575 * 359.97438 * 7 2 1 10 10 H 1.09003 * 110.41854 * 302.31168 * 9 7 2 11 11 C 1.54903 * 110.37827 * 64.62512 * 9 7 2 12 12 C 1.55136 * 101.65311 * 155.89885 * 11 9 7 13 13 C 1.54322 * 103.02200 * 324.34705 * 12 11 9 14 14 N 1.47445 * 107.22831 * 22.28490 * 13 12 11 15 15 C 1.46903 * 110.99834 * 123.26004 * 14 13 12 16 16 C 1.53001 * 109.47090 * 163.89234 * 15 14 13 17 17 H 1.09000 * 109.57769 * 54.41997 * 16 15 14 18 18 C 1.53101 * 109.68207 * 174.74488 * 16 15 14 19 19 C 1.52587 * 109.95313 * 182.89294 * 18 16 15 20 20 C 1.52584 * 110.72533 * 289.32123 * 19 18 16 21 21 C 1.53095 * 109.95702 * 70.67814 * 20 19 18 22 22 S 1.81747 * 108.84168 * 296.97544 * 21 20 19 23 23 H 0.97002 * 120.00359 * 359.97438 * 1 2 3 24 24 H 1.09009 * 110.98677 * 37.81006 * 11 9 7 25 25 H 1.09001 * 111.02472 * 274.00932 * 11 9 7 26 26 H 1.09003 * 110.70834 * 205.96983 * 12 11 9 27 27 H 1.08996 * 110.85789 * 82.79996 * 12 11 9 28 28 H 1.08999 * 109.89338 * 262.88104 * 13 12 11 29 29 H 1.08998 * 109.88721 * 141.68866 * 13 12 11 30 30 H 1.08993 * 109.47637 * 43.88746 * 15 14 13 31 31 H 1.09003 * 109.46969 * 283.88410 * 15 14 13 32 32 H 1.08995 * 109.38455 * 303.03808 * 18 16 15 33 33 H 1.08998 * 109.38811 * 62.74632 * 18 16 15 34 34 H 1.09005 * 109.21932 * 169.00372 * 19 18 16 35 35 H 1.08991 * 109.19479 * 49.62328 * 19 18 16 36 36 H 1.08999 * 109.39067 * 310.53172 * 20 19 18 37 37 H 1.09001 * 109.30717 * 190.77969 * 20 19 18 38 38 H 1.08992 * 109.57858 * 177.16709 * 21 20 19 39 39 H 1.09001 * 109.68171 * 56.84072 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.5883 -2.5556 0.8631 11 6 0.4419 -2.6548 -1.3122 12 6 0.2928 -4.1961 -1.4075 13 6 1.6341 -4.7106 -0.8437 14 7 2.1939 -3.6379 -0.0011 15 6 2.4417 -4.1169 1.3654 16 6 3.3716 -3.1398 2.0876 17 1 2.9524 -2.1347 2.0412 18 6 3.5286 -3.5632 3.5505 19 6 4.3971 -2.5530 4.2945 20 6 5.8500 -2.6507 3.8386 21 6 5.9874 -2.1117 2.4122 22 16 5.0064 -3.1551 1.2934 23 1 -0.4851 0.8400 0.0004 24 1 0.9989 -2.2631 -2.1634 25 1 -0.5323 -2.1726 -1.2304 26 1 0.1658 -4.5077 -2.4442 27 1 -0.5405 -4.5438 -0.7971 28 1 2.3186 -4.9349 -1.6617 29 1 1.4653 -5.6042 -0.2428 30 1 2.9084 -5.1011 1.3263 31 1 1.4964 -4.1841 1.9039 32 1 2.5465 -3.6116 4.0205 33 1 3.9982 -4.5458 3.5944 34 1 4.3426 -2.7523 5.3647 35 1 4.0259 -1.5474 4.0973 36 1 6.1679 -3.6930 3.8637 37 1 6.4783 -2.0644 4.5091 38 1 7.0347 -2.1376 2.1113 39 1 5.6207 -1.0861 2.3704 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260012522.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:28 Heat of formation + Delta-G solvation = -14.074577 kcal Electronic energy + Delta-G solvation = -17972.268954 eV Core-core repulsion = 15425.933966 eV Total energy + Delta-G solvation = -2546.334988 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.15420 -36.48274 -32.93254 -32.43362 -29.86397 -28.20608 -27.10529 -24.44816 -23.71892 -21.23765 -20.52572 -19.90513 -19.28926 -16.35649 -16.33980 -15.02942 -14.74002 -14.62410 -14.24426 -14.09576 -13.46114 -13.32582 -12.67262 -12.44292 -12.34327 -12.23005 -11.66189 -11.38943 -11.28201 -11.01478 -10.96152 -10.72733 -10.56330 -10.48818 -10.41868 -10.00821 -9.88794 -9.67966 -9.55089 -8.99981 -8.87820 -8.34691 -7.22339 -6.81409 -5.95716 -3.93972 2.39798 3.24209 3.32520 3.41403 3.47710 4.46345 4.80272 4.97575 5.00280 5.21644 5.34251 5.48505 5.54932 5.57299 5.65088 5.78431 5.81201 5.90562 6.02173 6.02411 6.08057 6.14731 6.20034 6.22985 6.27071 6.34468 6.40102 6.60759 6.65509 6.79978 7.06392 7.13759 7.48915 7.57705 7.97764 8.18182 8.30011 8.61339 9.17028 9.69127 11.13914 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.016224 B = 0.009953 C = 0.007122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.410005 B = 2812.673130 C = 3930.659433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.887 3.113 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.288 1.288 7 C -0.486 4.486 8 H 0.075 0.925 9 C 0.208 3.792 10 H 0.011 0.989 11 C -0.104 4.104 12 C -0.151 4.151 13 C 0.048 3.952 14 N -0.519 5.519 15 C 0.081 3.919 16 C -0.042 4.042 17 H 0.115 0.885 18 C -0.116 4.116 19 C -0.128 4.128 20 C -0.116 4.116 21 C -0.099 4.099 22 S -0.228 6.228 23 H 0.257 0.743 24 H 0.056 0.944 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.034 0.966 30 H 0.060 0.940 31 H 0.036 0.964 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.094 0.906 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.490 -6.979 6.114 11.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.716 3.284 4 H -0.195 1.195 5 H -0.212 1.212 6 H -0.214 1.214 7 C -0.525 4.525 8 H 0.093 0.907 9 C 0.103 3.897 10 H 0.028 0.972 11 C -0.143 4.143 12 C -0.189 4.189 13 C -0.080 4.080 14 N -0.243 5.243 15 C -0.049 4.049 16 C -0.171 4.171 17 H 0.133 0.867 18 C -0.156 4.156 19 C -0.165 4.165 20 C -0.156 4.156 21 C -0.248 4.248 22 S -0.001 6.001 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.079 0.921 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.112 0.888 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.156 -7.207 4.953 11.299 hybrid contribution -0.858 1.376 1.397 2.140 sum 6.298 -5.831 6.349 10.676 Atomic orbital electron populations 1.69973 1.05864 1.26202 1.51758 1.24955 0.94770 0.98932 0.95800 0.86593 0.80505 0.83998 0.77337 1.19478 1.21210 1.21448 1.21258 0.94069 0.88821 1.48311 0.90693 1.20210 0.88320 0.88208 0.93006 0.97150 1.22628 1.01158 0.90493 0.99973 1.22878 0.96680 0.99875 0.99502 1.22676 0.94897 0.93448 0.97003 1.63635 1.46747 1.06271 1.07659 1.21883 0.96254 0.95878 0.90874 1.23364 0.94090 1.05494 0.94181 0.86673 1.21785 1.00082 0.99125 0.94639 1.21502 0.94965 1.00366 0.99698 1.21690 0.96925 1.01638 0.95298 1.23438 1.02346 1.02015 0.96991 1.86890 1.08038 1.66358 1.38845 0.93325 0.92493 0.91091 0.92703 0.93087 0.91920 0.94730 0.92133 0.94628 0.91385 0.91448 0.91801 0.91553 0.91135 0.91829 0.88789 0.90229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.46 12.27 55.43 0.68 -24.78 16 2 C 0.06 1.53 5.34 -17.82 -0.10 1.43 16 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.49 -13.01 6.99 -34.44 -0.24 -13.25 16 8 H 0.07 2.07 7.65 -52.49 -0.40 1.67 16 9 C 0.21 5.13 2.09 -67.34 -0.14 4.99 16 10 H 0.01 0.29 7.52 -51.93 -0.39 -0.10 16 11 C -0.10 -2.44 5.86 -24.60 -0.14 -2.58 16 12 C -0.15 -2.90 6.94 -24.91 -0.17 -3.07 16 13 C 0.05 0.91 6.84 -2.83 -0.02 0.89 16 14 N -0.52 -11.13 4.52 -224.75 -1.02 -12.15 16 15 C 0.08 1.53 4.08 -3.82 -0.02 1.51 16 16 C -0.04 -0.77 2.37 -26.68 -0.06 -0.83 16 17 H 0.12 2.51 6.12 -51.93 -0.32 2.19 16 18 C -0.12 -1.69 5.05 -26.89 -0.14 -1.83 16 19 C -0.13 -1.68 5.61 -27.16 -0.15 -1.83 16 20 C -0.12 -1.44 5.75 -26.90 -0.15 -1.60 16 21 C -0.10 -1.46 6.45 37.21 0.24 -1.22 16 22 S -0.23 -4.14 21.47 -107.50 -2.31 -6.44 16 23 H 0.26 7.01 8.31 -40.82 -0.34 6.68 16 24 H 0.06 1.41 8.05 -51.92 -0.42 0.99 16 25 H 0.07 1.79 7.57 -51.93 -0.39 1.40 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.03 0.59 7.46 -51.93 -0.39 0.20 16 30 H 0.06 1.05 7.85 -51.93 -0.41 0.64 16 31 H 0.04 0.68 7.67 -51.93 -0.40 0.28 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.91 8.06 -51.93 -0.42 0.50 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 36 H 0.07 0.85 8.06 -51.93 -0.42 0.43 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 310.03 15.07 4.67 4.67 Total: -1.00 -27.96 310.03 -10.98 -38.93 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -6.89 Total: 0.75 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: -1.09 Total: -17.39 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: -0.34 Total: -36.93 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -4.14 SS G_CDS: -2.31 Total: -6.44 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.96 -10.98 -38.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260012522.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.856 kcal (2) G-P(sol) polarization free energy of solvation -27.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds