Wall clock time and date at job start Mon Mar 30 2020 06:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99896 * 2 1 4 4 H 1.48505 * 109.47017 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47243 * 300.00036 * 3 2 1 6 6 H 1.48496 * 109.47277 * 60.00282 * 3 2 1 7 7 C 1.37878 * 120.00222 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00415 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99575 * 359.97438 * 7 2 1 10 10 H 1.09003 * 110.41854 * 302.31168 * 9 7 2 11 11 C 1.54903 * 110.37827 * 64.62512 * 9 7 2 12 12 C 1.55136 * 101.65311 * 155.89885 * 11 9 7 13 13 C 1.54322 * 103.02200 * 324.34705 * 12 11 9 14 14 N 1.47445 * 107.22831 * 22.28490 * 13 12 11 15 15 C 1.46903 * 110.99834 * 123.26004 * 14 13 12 16 16 C 1.53001 * 109.47090 * 163.89234 * 15 14 13 17 17 H 1.09000 * 109.57769 * 54.41997 * 16 15 14 18 18 C 1.53101 * 109.68207 * 174.74488 * 16 15 14 19 19 C 1.52587 * 109.95313 * 182.89294 * 18 16 15 20 20 C 1.52584 * 110.72533 * 289.32123 * 19 18 16 21 21 C 1.53095 * 109.95702 * 70.67814 * 20 19 18 22 22 S 1.81747 * 108.84168 * 296.97544 * 21 20 19 23 23 H 0.97002 * 120.00359 * 359.97438 * 1 2 3 24 24 H 1.09009 * 110.98677 * 37.81006 * 11 9 7 25 25 H 1.09001 * 111.02472 * 274.00932 * 11 9 7 26 26 H 1.09003 * 110.70834 * 205.96983 * 12 11 9 27 27 H 1.08996 * 110.85789 * 82.79996 * 12 11 9 28 28 H 1.08999 * 109.89338 * 262.88104 * 13 12 11 29 29 H 1.08998 * 109.88721 * 141.68866 * 13 12 11 30 30 H 1.08993 * 109.47637 * 43.88746 * 15 14 13 31 31 H 1.09003 * 109.46969 * 283.88410 * 15 14 13 32 32 H 1.08995 * 109.38455 * 303.03808 * 18 16 15 33 33 H 1.08998 * 109.38811 * 62.74632 * 18 16 15 34 34 H 1.09005 * 109.21932 * 169.00372 * 19 18 16 35 35 H 1.08991 * 109.19479 * 49.62328 * 19 18 16 36 36 H 1.08999 * 109.39067 * 310.53172 * 20 19 18 37 37 H 1.09001 * 109.30717 * 190.77969 * 20 19 18 38 38 H 1.08992 * 109.57858 * 177.16709 * 21 20 19 39 39 H 1.09001 * 109.68171 * 56.84072 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.5883 -2.5556 0.8631 11 6 0.4419 -2.6548 -1.3122 12 6 0.2928 -4.1961 -1.4075 13 6 1.6341 -4.7106 -0.8437 14 7 2.1939 -3.6379 -0.0011 15 6 2.4417 -4.1169 1.3654 16 6 3.3716 -3.1398 2.0876 17 1 2.9524 -2.1347 2.0412 18 6 3.5286 -3.5632 3.5505 19 6 4.3971 -2.5530 4.2945 20 6 5.8500 -2.6507 3.8386 21 6 5.9874 -2.1117 2.4122 22 16 5.0064 -3.1551 1.2934 23 1 -0.4851 0.8400 0.0004 24 1 0.9989 -2.2631 -2.1634 25 1 -0.5323 -2.1726 -1.2304 26 1 0.1658 -4.5077 -2.4442 27 1 -0.5405 -4.5438 -0.7971 28 1 2.3186 -4.9349 -1.6617 29 1 1.4653 -5.6042 -0.2428 30 1 2.9084 -5.1011 1.3263 31 1 1.4964 -4.1841 1.9039 32 1 2.5465 -3.6116 4.0205 33 1 3.9982 -4.5458 3.5944 34 1 4.3426 -2.7523 5.3647 35 1 4.0259 -1.5474 4.0973 36 1 6.1679 -3.6930 3.8637 37 1 6.4783 -2.0644 4.5091 38 1 7.0347 -2.1376 2.1113 39 1 5.6207 -1.0861 2.3704 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260012522.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:28 Heat of formation + Delta-G solvation = -29.227028 kcal Electronic energy + Delta-G solvation = -17972.926014 eV Core-core repulsion = 15425.933966 eV Total energy + Delta-G solvation = -2546.992047 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.82298 -37.68025 -34.73203 -34.11427 -31.28042 -30.10773 -28.44321 -26.32098 -25.14536 -22.67102 -21.84459 -21.45508 -21.00576 -18.38885 -17.68814 -16.72421 -16.42589 -16.07523 -15.79003 -15.55635 -14.76548 -14.58301 -14.24092 -14.18185 -13.82155 -13.59130 -13.34455 -12.99988 -12.87047 -12.67709 -12.50675 -12.34393 -12.16212 -11.86103 -11.76319 -11.71630 -11.49858 -11.40335 -11.14281 -10.87605 -10.44652 -10.33645 -8.91420 -8.27202 -8.06255 -6.10082 1.06654 1.36976 1.40836 1.52508 1.90829 2.44620 3.22540 3.34631 3.83463 3.90834 3.94756 4.07860 4.20471 4.23805 4.29853 4.41460 4.44601 4.56805 4.64463 4.75452 4.76986 4.83004 4.90065 4.94268 5.01508 5.03952 5.11821 5.17765 5.18669 5.24624 5.37500 5.43688 5.57101 5.67786 5.85797 6.28202 6.56643 6.67463 7.03610 7.55828 9.01924 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.016224 B = 0.009953 C = 0.007122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.410005 B = 2812.673130 C = 3930.659433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.010 3.990 3 Si 0.943 3.057 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.486 4.486 8 H 0.062 0.938 9 C 0.215 3.785 10 H -0.022 1.022 11 C -0.102 4.102 12 C -0.138 4.138 13 C 0.046 3.954 14 N -0.532 5.532 15 C 0.081 3.919 16 C -0.034 4.034 17 H 0.070 0.930 18 C -0.111 4.111 19 C -0.127 4.127 20 C -0.109 4.109 21 C -0.089 4.089 22 S -0.274 6.274 23 H 0.257 0.743 24 H 0.038 0.962 25 H 0.046 0.954 26 H 0.080 0.920 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.032 0.968 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.045 0.955 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.113 0.887 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.909 -8.168 7.071 13.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.188 4.188 3 Si 0.770 3.230 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.525 4.525 8 H 0.080 0.920 9 C 0.108 3.892 10 H -0.004 1.004 11 C -0.142 4.142 12 C -0.176 4.176 13 C -0.082 4.082 14 N -0.256 5.256 15 C -0.048 4.048 16 C -0.163 4.163 17 H 0.089 0.911 18 C -0.151 4.151 19 C -0.165 4.165 20 C -0.148 4.148 21 C -0.238 4.238 22 S -0.047 6.047 23 H 0.066 0.934 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.098 0.902 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.050 0.950 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.063 0.937 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.131 0.869 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.585 -8.408 5.912 13.392 hybrid contribution -1.264 1.736 1.104 2.415 sum 7.321 -6.672 7.016 12.138 Atomic orbital electron populations 1.70080 1.06951 1.26721 1.52956 1.25600 0.95481 1.01762 0.95910 0.85720 0.79329 0.80632 0.77329 1.19361 1.21031 1.20934 1.21403 0.93507 0.90188 1.47395 0.91975 1.19944 0.88246 0.88907 0.92096 1.00441 1.22433 0.99237 0.93876 0.98618 1.22797 0.97347 0.96041 1.01421 1.22771 0.94626 0.93530 0.97236 1.63538 1.45873 1.06576 1.09584 1.21955 0.96401 0.96916 0.89547 1.23213 0.93592 1.02882 0.96599 0.91111 1.21763 1.00913 1.00296 0.92085 1.21522 0.95170 0.98667 1.01141 1.21666 0.96714 1.02633 0.93803 1.23525 1.02269 1.00209 0.97778 1.86896 1.08873 1.67304 1.41667 0.93423 0.94333 0.93563 0.90184 0.92154 0.91140 0.92131 0.90055 0.95033 0.91096 0.89755 0.89068 0.93660 0.89992 0.89189 0.86883 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.10 12.27 21.45 0.26 -53.83 16 2 C 0.01 0.56 5.34 84.66 0.45 1.02 16 3 Si 0.94 44.97 29.54 68.60 2.03 47.00 16 4 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 6 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 7 C -0.49 -26.86 6.99 25.60 0.18 -26.69 16 8 H 0.06 3.54 7.65 -2.91 -0.02 3.52 16 9 C 0.21 10.86 2.09 44.64 0.09 10.96 16 10 H -0.02 -1.24 7.52 -2.39 -0.02 -1.26 16 11 C -0.10 -4.93 5.86 31.98 0.19 -4.74 16 12 C -0.14 -5.11 6.94 31.77 0.22 -4.89 16 13 C 0.05 1.67 6.84 86.65 0.59 2.26 16 14 N -0.53 -22.75 4.52 -864.97 -3.91 -26.66 16 15 C 0.08 3.02 4.08 86.30 0.35 3.37 16 16 C -0.03 -1.22 2.37 30.63 0.07 -1.15 16 17 H 0.07 3.20 6.12 -2.39 -0.01 3.19 16 18 C -0.11 -3.05 5.05 30.49 0.15 -2.90 16 19 C -0.13 -3.08 5.61 30.32 0.17 -2.91 16 20 C -0.11 -2.38 5.75 30.49 0.18 -2.21 16 21 C -0.09 -2.49 6.45 72.01 0.46 -2.03 16 22 S -0.27 -9.76 21.47 -56.49 -1.21 -10.97 16 23 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 24 H 0.04 1.94 8.05 -2.38 -0.02 1.92 16 25 H 0.05 2.41 7.57 -2.39 -0.02 2.39 16 26 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 27 H 0.06 2.12 8.14 -2.39 -0.02 2.11 16 28 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.06 1.88 7.46 -2.39 -0.02 1.87 16 30 H 0.08 2.67 7.85 -2.39 -0.02 2.65 16 31 H 0.03 1.19 7.67 -2.39 -0.02 1.18 16 32 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.08 2.06 8.06 -2.39 -0.02 2.04 16 34 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 35 H 0.04 1.28 8.08 -2.39 -0.02 1.26 16 36 H 0.08 1.65 8.06 -2.39 -0.02 1.64 16 37 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 39 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -61.95 310.03 1.27 -60.68 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.99 Total: 13.69 kcal Atomic # 6 Polarization: -33.02 SS G_CDS: 3.11 Total: -29.91 kcal Atomic # 7 Polarization: -76.84 SS G_CDS: -3.65 Total: -80.49 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Atomic # 16 Polarization: -9.76 SS G_CDS: -1.21 Total: -10.97 kcal Total: -61.95 1.27 -60.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260012522.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.453 kcal (2) G-P(sol) polarization free energy of solvation -61.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds