Wall clock time and date at job start Mon Mar 30 2020 06:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 120.00040 * 2 1 4 4 H 1.48499 * 109.46637 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47024 * 59.99589 * 3 2 1 6 6 H 1.48497 * 109.47055 * 299.99517 * 3 2 1 7 7 C 1.37881 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99927 * 175.10907 * 7 2 1 9 9 C 1.50704 * 119.99799 * 355.11826 * 7 2 1 10 10 H 1.09001 * 109.50582 * 35.13909 * 9 7 2 11 11 C 1.53117 * 109.49872 * 275.06114 * 9 7 2 12 12 C 1.53124 * 109.15891 * 182.44631 * 11 9 7 13 13 C 1.53037 * 109.31111 * 57.59364 * 12 11 9 14 14 N 1.46849 * 109.52258 * 300.84485 * 13 12 11 15 15 C 1.46904 * 111.00046 * 185.83280 * 14 13 12 16 16 C 1.52996 * 109.47273 * 169.85191 * 15 14 13 17 17 H 1.09004 * 110.29915 * 62.88039 * 16 15 14 18 18 C 1.53704 * 110.34289 * 185.04848 * 16 15 14 19 19 C 1.52934 * 112.49315 * 116.05232 * 18 16 15 20 20 C 1.55158 * 108.96049 * 30.10013 * 19 18 16 21 21 S 1.83395 * 110.34376 * 300.59776 * 16 15 14 22 22 C 1.46849 * 111.19605 * 61.74244 * 14 13 12 23 23 H 0.96999 * 119.99900 * 185.12422 * 1 2 3 24 24 H 1.08998 * 109.52872 * 302.30974 * 11 9 7 25 25 H 1.08997 * 109.52712 * 62.50273 * 11 9 7 26 26 H 1.08999 * 109.46934 * 297.65617 * 12 11 9 27 27 H 1.09000 * 109.54008 * 177.57737 * 12 11 9 28 28 H 1.08996 * 109.46648 * 180.82709 * 13 12 11 29 29 H 1.09008 * 109.45050 * 60.85208 * 13 12 11 30 30 H 1.08995 * 109.47483 * 289.85990 * 15 14 13 31 31 H 1.09006 * 109.46786 * 49.85653 * 15 14 13 32 32 H 1.09002 * 108.88905 * 236.84561 * 18 16 15 33 33 H 1.09001 * 108.88739 * 355.25251 * 18 16 15 34 34 H 1.09001 * 109.60513 * 150.03016 * 19 18 16 35 35 H 1.09002 * 109.60311 * 270.35667 * 19 18 16 36 36 H 1.08998 * 111.12903 * 76.47019 * 20 19 18 37 37 H 1.08997 * 111.13340 * 200.65564 * 20 19 18 38 38 H 1.09005 * 109.45902 * 178.24120 * 22 14 13 39 39 H 1.08995 * 109.46492 * 58.27604 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3965 1.2124 6 1 1.8905 2.3964 -1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0816 -1.1958 -0.0792 9 6 1.2551 -2.4968 0.1122 10 1 0.3042 -2.4159 -0.4145 11 6 0.9968 -2.8129 1.5879 12 6 0.2895 -4.1668 1.6955 13 6 1.1510 -5.2422 1.0296 14 7 1.3680 -4.8936 -0.3803 15 6 2.0741 -5.9711 -1.0863 16 6 2.0592 -5.6908 -2.5903 17 1 2.5972 -4.7682 -2.8084 18 6 2.6821 -6.8669 -3.3593 19 6 1.6770 -7.5632 -4.2780 20 6 0.6282 -6.5248 -4.7566 21 16 0.3336 -5.5855 -3.2022 22 6 2.0887 -3.6205 -0.5077 23 1 -0.4850 -0.8367 0.0750 24 1 1.9454 -2.8548 2.1230 25 1 0.3667 -2.0367 2.0220 26 1 -0.6769 -4.1126 1.1942 27 1 0.1410 -4.4181 2.7457 28 1 0.6430 -6.2045 1.0918 29 1 2.1120 -5.3051 1.5402 30 1 3.1051 -6.0204 -0.7361 31 1 1.5775 -6.9212 -0.8890 32 1 3.5116 -6.4954 -3.9610 33 1 3.0669 -7.5927 -2.6428 34 1 2.1976 -7.9810 -5.1397 35 1 1.1744 -8.3615 -3.7319 36 1 1.0396 -5.8802 -5.5333 37 1 -0.2833 -7.0156 -5.0978 38 1 2.2616 -3.4051 -1.5622 39 1 3.0452 -3.6913 0.0100 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260057811.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:32 Heat of formation + Delta-G solvation = -19.767986 kcal Electronic energy + Delta-G solvation = -17567.132568 eV Core-core repulsion = 15020.550696 eV Total energy + Delta-G solvation = -2546.581872 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.53155 -36.27906 -33.93149 -32.24377 -29.69979 -29.65072 -26.00740 -24.47132 -23.85421 -21.74035 -21.36077 -20.16192 -18.88651 -16.83841 -16.54296 -15.67749 -14.89663 -14.59260 -14.22799 -13.95516 -13.67629 -13.63145 -13.01184 -12.79516 -12.57683 -12.36856 -11.77246 -11.59620 -11.56985 -11.27228 -11.17291 -11.05307 -10.76284 -10.58955 -10.20738 -10.14999 -10.04234 -9.59059 -9.39138 -9.18405 -8.36804 -8.20091 -7.72861 -7.32019 -6.26748 -3.97205 2.06633 2.64284 3.47106 3.50913 3.63986 4.25264 4.56215 4.64326 4.64896 4.86524 5.03817 5.20842 5.36596 5.43173 5.45646 5.55618 5.60800 5.61880 5.74713 5.76467 5.79257 5.88969 5.96114 6.09000 6.14157 6.28800 6.43101 6.53600 6.59179 6.82473 7.02532 7.07859 7.51886 7.62281 7.70479 7.84532 8.37348 8.53291 8.98106 9.75709 11.12683 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.024162 B = 0.005995 C = 0.005368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.573350 B = 4669.286501 C = 5214.403222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.022 3.978 3 Si 1.070 2.930 4 H -0.291 1.291 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.595 4.595 8 H 0.045 0.955 9 C 0.037 3.963 10 H 0.041 0.959 11 C -0.109 4.109 12 C -0.118 4.118 13 C 0.067 3.933 14 N -0.534 5.534 15 C 0.073 3.927 16 C -0.039 4.039 17 H 0.097 0.903 18 C -0.125 4.125 19 C -0.120 4.120 20 C -0.097 4.097 21 S -0.232 6.232 22 C 0.073 3.927 23 H 0.273 0.727 24 H 0.039 0.961 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.022 0.978 30 H 0.035 0.965 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.063 0.937 39 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.146 -15.377 -5.391 16.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.183 4.183 3 Si 0.899 3.101 4 H -0.217 1.217 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.633 4.633 8 H 0.064 0.936 9 C 0.018 3.982 10 H 0.059 0.941 11 C -0.147 4.147 12 C -0.156 4.156 13 C -0.061 4.061 14 N -0.258 5.258 15 C -0.056 4.056 16 C -0.169 4.169 17 H 0.115 0.885 18 C -0.165 4.165 19 C -0.159 4.159 20 C -0.245 4.245 21 S -0.006 6.006 22 C -0.054 4.054 23 H 0.085 0.915 24 H 0.058 0.942 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.040 0.960 30 H 0.053 0.947 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.118 0.882 38 H 0.081 0.919 39 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 2.492 -13.149 -5.208 14.361 hybrid contribution 2.141 -2.239 0.022 3.097 sum 4.633 -15.388 -5.186 16.886 Atomic orbital electron populations 1.70699 1.06810 1.31282 1.46106 1.25740 0.96539 1.02361 0.93612 0.83539 0.74451 0.75179 0.76912 1.21694 1.21460 1.21378 1.21932 0.94289 0.91710 1.55400 0.93646 1.18845 0.96493 0.92040 0.90793 0.94096 1.21783 0.98224 0.93818 1.00904 1.21658 0.99501 0.96373 0.98061 1.21951 0.98024 0.98172 0.87979 1.62018 1.48811 1.02750 1.12240 1.22050 0.96671 0.95810 0.91118 1.23790 0.94528 1.00832 0.97716 0.88503 1.22054 0.99068 0.96916 0.98451 1.22329 0.96082 0.98443 0.99090 1.24398 1.01893 0.99339 0.98895 1.88473 1.15440 1.74429 1.22260 1.22273 0.94655 0.88168 1.00259 0.91541 0.94188 0.92930 0.91856 0.93250 0.92119 0.95951 0.94659 0.90645 0.91216 0.90534 0.90758 0.90704 0.89738 0.88165 0.91857 0.96683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.00 13.63 55.43 0.76 -27.24 16 2 C 0.02 0.64 5.45 -17.82 -0.10 0.54 16 3 Si 1.07 25.67 29.91 -169.99 -5.08 20.59 16 4 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.59 -16.82 8.32 -34.44 -0.29 -17.11 16 8 H 0.05 1.29 7.81 -52.49 -0.41 0.88 16 9 C 0.04 0.95 1.99 -91.69 -0.18 0.77 16 10 H 0.04 1.17 6.67 -51.93 -0.35 0.82 16 11 C -0.11 -2.52 5.27 -26.61 -0.14 -2.66 16 12 C -0.12 -2.27 6.09 -26.65 -0.16 -2.43 16 13 C 0.07 1.17 5.46 -3.83 -0.02 1.15 16 14 N -0.53 -9.99 4.24 -234.67 -0.99 -10.98 16 15 C 0.07 1.10 4.22 -3.82 -0.02 1.09 16 16 C -0.04 -0.57 3.11 -26.37 -0.08 -0.65 16 17 H 0.10 1.54 6.62 -51.93 -0.34 1.20 16 18 C -0.13 -1.32 6.03 -26.40 -0.16 -1.48 16 19 C -0.12 -1.13 6.34 -25.62 -0.16 -1.29 16 20 C -0.10 -1.08 7.52 38.30 0.29 -0.79 16 21 S -0.23 -3.72 22.28 -107.50 -2.40 -6.12 16 22 C 0.07 1.60 4.56 -3.83 -0.02 1.58 16 23 H 0.27 8.41 6.66 -40.82 -0.27 8.14 16 24 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.05 1.32 8.14 -51.93 -0.42 0.89 16 26 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.94 8.01 -51.93 -0.42 0.52 16 29 H 0.02 0.39 8.14 -51.92 -0.42 -0.04 16 30 H 0.04 0.51 8.12 -51.93 -0.42 0.09 16 31 H 0.08 1.05 7.99 -51.93 -0.41 0.64 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.72 7.62 -51.93 -0.40 0.32 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.06 1.42 6.29 -51.93 -0.33 1.10 16 39 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 311.09 15.07 4.69 4.69 Total: -1.00 -30.60 311.09 -10.86 -41.46 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -6.79 Total: -1.10 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: -1.04 Total: -21.29 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: -0.24 Total: -38.22 kcal Atomic # 14 Polarization: 25.67 SS G_CDS: -5.08 Total: 20.59 kcal Atomic # 16 Polarization: -3.72 SS G_CDS: -2.40 Total: -6.12 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.60 -10.86 -41.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260057811.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.689 kcal (2) G-P(sol) polarization free energy of solvation -30.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds