Wall clock time and date at job start Mon Mar 30 2020 06:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 120.00040 * 2 1 4 4 H 1.48499 * 109.46637 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47024 * 59.99589 * 3 2 1 6 6 H 1.48497 * 109.47055 * 299.99517 * 3 2 1 7 7 C 1.37881 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99927 * 175.10907 * 7 2 1 9 9 C 1.50704 * 119.99799 * 355.11826 * 7 2 1 10 10 H 1.09001 * 109.50582 * 35.13909 * 9 7 2 11 11 C 1.53117 * 109.49872 * 275.06114 * 9 7 2 12 12 C 1.53124 * 109.15891 * 182.44631 * 11 9 7 13 13 C 1.53037 * 109.31111 * 57.59364 * 12 11 9 14 14 N 1.46849 * 109.52258 * 300.84485 * 13 12 11 15 15 C 1.46904 * 111.00046 * 185.83280 * 14 13 12 16 16 C 1.52996 * 109.47273 * 169.85191 * 15 14 13 17 17 H 1.09004 * 110.29915 * 62.88039 * 16 15 14 18 18 C 1.53704 * 110.34289 * 185.04848 * 16 15 14 19 19 C 1.52934 * 112.49315 * 116.05232 * 18 16 15 20 20 C 1.55158 * 108.96049 * 30.10013 * 19 18 16 21 21 S 1.83395 * 110.34376 * 300.59776 * 16 15 14 22 22 C 1.46849 * 111.19605 * 61.74244 * 14 13 12 23 23 H 0.96999 * 119.99900 * 185.12422 * 1 2 3 24 24 H 1.08998 * 109.52872 * 302.30974 * 11 9 7 25 25 H 1.08997 * 109.52712 * 62.50273 * 11 9 7 26 26 H 1.08999 * 109.46934 * 297.65617 * 12 11 9 27 27 H 1.09000 * 109.54008 * 177.57737 * 12 11 9 28 28 H 1.08996 * 109.46648 * 180.82709 * 13 12 11 29 29 H 1.09008 * 109.45050 * 60.85208 * 13 12 11 30 30 H 1.08995 * 109.47483 * 289.85990 * 15 14 13 31 31 H 1.09006 * 109.46786 * 49.85653 * 15 14 13 32 32 H 1.09002 * 108.88905 * 236.84561 * 18 16 15 33 33 H 1.09001 * 108.88739 * 355.25251 * 18 16 15 34 34 H 1.09001 * 109.60513 * 150.03016 * 19 18 16 35 35 H 1.09002 * 109.60311 * 270.35667 * 19 18 16 36 36 H 1.08998 * 111.12903 * 76.47019 * 20 19 18 37 37 H 1.08997 * 111.13340 * 200.65564 * 20 19 18 38 38 H 1.09005 * 109.45902 * 178.24120 * 22 14 13 39 39 H 1.08995 * 109.46492 * 58.27604 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3965 1.2124 6 1 1.8905 2.3964 -1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0816 -1.1958 -0.0792 9 6 1.2551 -2.4968 0.1122 10 1 0.3042 -2.4159 -0.4145 11 6 0.9968 -2.8129 1.5879 12 6 0.2895 -4.1668 1.6955 13 6 1.1510 -5.2422 1.0296 14 7 1.3680 -4.8936 -0.3803 15 6 2.0741 -5.9711 -1.0863 16 6 2.0592 -5.6908 -2.5903 17 1 2.5972 -4.7682 -2.8084 18 6 2.6821 -6.8669 -3.3593 19 6 1.6770 -7.5632 -4.2780 20 6 0.6282 -6.5248 -4.7566 21 16 0.3336 -5.5855 -3.2022 22 6 2.0887 -3.6205 -0.5077 23 1 -0.4850 -0.8367 0.0750 24 1 1.9454 -2.8548 2.1230 25 1 0.3667 -2.0367 2.0220 26 1 -0.6769 -4.1126 1.1942 27 1 0.1410 -4.4181 2.7457 28 1 0.6430 -6.2045 1.0918 29 1 2.1120 -5.3051 1.5402 30 1 3.1051 -6.0204 -0.7361 31 1 1.5775 -6.9212 -0.8890 32 1 3.5116 -6.4954 -3.9610 33 1 3.0669 -7.5927 -2.6428 34 1 2.1976 -7.9810 -5.1397 35 1 1.1744 -8.3615 -3.7319 36 1 1.0396 -5.8802 -5.5333 37 1 -0.2833 -7.0156 -5.0978 38 1 2.2616 -3.4051 -1.5622 39 1 3.0452 -3.6913 0.0100 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260057811.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:31 Heat of formation + Delta-G solvation = -37.684041 kcal Electronic energy + Delta-G solvation = -17567.909467 eV Core-core repulsion = 15020.550696 eV Total energy + Delta-G solvation = -2547.358771 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.09850 -37.36764 -35.69132 -33.90228 -31.54823 -30.91351 -27.10102 -26.57081 -25.15460 -23.39851 -22.87184 -21.14550 -20.63083 -18.86312 -17.70846 -16.98969 -16.17819 -16.04658 -15.65669 -15.56705 -15.36603 -14.99330 -14.40988 -14.18220 -13.99931 -13.76534 -13.57717 -13.24282 -12.76249 -12.60380 -12.40370 -12.28509 -12.19644 -12.02791 -11.93529 -11.80107 -11.57935 -11.32723 -11.03223 -10.60877 -10.47111 -10.38110 -9.18759 -8.59724 -8.58019 -6.30144 0.99758 1.50556 1.60347 1.61819 1.75940 2.56369 2.96932 3.22175 3.62849 3.72477 3.95476 4.01580 4.09711 4.14416 4.20406 4.32824 4.41674 4.42809 4.52765 4.55649 4.67645 4.72124 4.76706 4.77916 4.89841 4.94114 4.99897 5.02195 5.06740 5.19340 5.21993 5.23733 5.54481 5.75240 5.96814 6.22208 6.27520 6.31097 6.68126 7.51456 8.79406 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.024162 B = 0.005995 C = 0.005368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.573350 B = 4669.286501 C = 5214.403222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.031 4.031 3 Si 1.117 2.883 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.281 1.281 7 C -0.605 4.605 8 H 0.042 0.958 9 C 0.033 3.967 10 H -0.001 1.001 11 C -0.101 4.101 12 C -0.111 4.111 13 C 0.068 3.932 14 N -0.548 5.548 15 C 0.075 3.925 16 C -0.027 4.027 17 H 0.071 0.929 18 C -0.121 4.121 19 C -0.113 4.113 20 C -0.075 4.075 21 S -0.334 6.334 22 C 0.093 3.907 23 H 0.257 0.743 24 H 0.042 0.958 25 H 0.021 0.979 26 H 0.046 0.954 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.033 0.967 30 H 0.050 0.950 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.114 0.886 38 H 0.048 0.952 39 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.873 -17.641 -5.726 19.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.229 4.229 3 Si 0.939 3.061 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.207 1.207 7 C -0.644 4.644 8 H 0.060 0.940 9 C 0.014 3.986 10 H 0.017 0.983 11 C -0.139 4.139 12 C -0.149 4.149 13 C -0.059 4.059 14 N -0.272 5.272 15 C -0.054 4.054 16 C -0.156 4.156 17 H 0.090 0.910 18 C -0.160 4.160 19 C -0.152 4.152 20 C -0.223 4.223 21 S -0.108 6.108 22 C -0.035 4.035 23 H 0.068 0.932 24 H 0.061 0.939 25 H 0.040 0.960 26 H 0.065 0.935 27 H 0.098 0.902 28 H 0.109 0.891 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.113 0.887 32 H 0.099 0.901 33 H 0.114 0.886 34 H 0.122 0.878 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.132 0.868 38 H 0.066 0.934 39 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 4.227 -15.448 -5.545 16.949 hybrid contribution 1.590 -1.590 0.072 2.250 sum 5.817 -17.038 -5.474 18.818 Atomic orbital electron populations 1.70830 1.07880 1.30364 1.48618 1.27224 0.96554 1.06297 0.92803 0.82948 0.74281 0.71464 0.77401 1.19610 1.20518 1.20661 1.22315 0.94292 0.93303 1.54476 0.93994 1.18791 0.94740 0.92823 0.92235 0.98319 1.21583 0.98132 0.95491 0.98711 1.21586 0.98509 0.94641 1.00137 1.21998 0.98382 0.98503 0.87034 1.61925 1.49217 1.02541 1.13518 1.22153 0.97183 0.95007 0.91032 1.23767 0.92390 1.01565 0.97850 0.91024 1.22075 0.99335 0.95765 0.98869 1.22331 0.95344 0.97639 0.99907 1.24494 1.03279 0.98845 0.95635 1.88764 1.18562 1.76468 1.26991 1.21827 0.93883 0.89003 0.98739 0.93230 0.93945 0.96050 0.93523 0.90233 0.89068 0.94877 0.93214 0.88702 0.90082 0.88613 0.87779 0.90072 0.89276 0.86766 0.93401 0.96792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.05 13.63 21.45 0.29 -59.76 16 2 C -0.03 -1.84 5.45 84.66 0.46 -1.37 16 3 Si 1.12 52.17 29.91 68.60 2.05 54.22 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 6 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 7 C -0.61 -35.31 8.32 25.60 0.21 -35.10 16 8 H 0.04 2.42 7.81 -2.91 -0.02 2.40 16 9 C 0.03 1.77 1.99 -11.49 -0.02 1.74 16 10 H 0.00 -0.09 6.67 -2.39 -0.02 -0.10 16 11 C -0.10 -4.79 5.27 30.67 0.16 -4.63 16 12 C -0.11 -4.21 6.09 30.65 0.19 -4.02 16 13 C 0.07 2.25 5.46 86.33 0.47 2.72 16 14 N -0.55 -20.15 4.24 -896.35 -3.80 -23.94 16 15 C 0.07 2.11 4.22 86.30 0.36 2.47 16 16 C -0.03 -0.74 3.11 30.83 0.10 -0.64 16 17 H 0.07 2.31 6.62 -2.38 -0.02 2.29 16 18 C -0.12 -2.16 6.03 30.81 0.19 -1.98 16 19 C -0.11 -1.71 6.34 31.31 0.20 -1.51 16 20 C -0.07 -1.51 7.52 72.72 0.55 -0.96 16 21 S -0.33 -10.74 22.28 -56.49 -1.26 -12.00 16 22 C 0.09 4.14 4.56 86.32 0.39 4.53 16 23 H 0.26 16.86 6.66 -92.71 -0.62 16.25 16 24 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 28 H 0.09 2.50 8.01 -2.39 -0.02 2.48 16 29 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.05 1.28 8.12 -2.39 -0.02 1.27 16 31 H 0.09 2.33 7.99 -2.38 -0.02 2.31 16 32 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.10 1.39 7.62 -2.39 -0.02 1.37 16 34 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.05 2.24 6.29 -2.38 -0.02 2.22 16 39 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -70.19 311.09 1.69 -68.50 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 1.14 Total: 11.72 kcal Atomic # 6 Polarization: -42.01 SS G_CDS: 3.26 Total: -38.75 kcal Atomic # 7 Polarization: -80.19 SS G_CDS: -3.50 Total: -83.70 kcal Atomic # 14 Polarization: 52.17 SS G_CDS: 2.05 Total: 54.22 kcal Atomic # 16 Polarization: -10.74 SS G_CDS: -1.26 Total: -12.00 kcal Total: -70.19 1.69 -68.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260057811.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.817 kcal (2) G-P(sol) polarization free energy of solvation -70.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds