Wall clock time and date at job start Mon Mar 30 2020 06:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99601 * 2 1 4 4 H 1.48503 * 109.46785 * 239.99514 * 3 2 1 5 5 H 1.48495 * 109.47101 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47220 * 119.99603 * 3 2 1 7 7 C 1.37872 * 120.00480 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00302 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99731 * 359.72959 * 7 2 1 10 10 H 1.09004 * 109.50559 * 60.27708 * 9 7 2 11 11 C 1.53123 * 109.50516 * 300.19486 * 9 7 2 12 12 C 1.53115 * 109.16278 * 182.40360 * 11 9 7 13 13 C 1.53046 * 109.27668 * 57.65471 * 12 11 9 14 14 N 1.46850 * 109.52387 * 300.81989 * 13 12 11 15 15 C 1.46900 * 110.99865 * 185.83909 * 14 13 12 16 16 C 1.52999 * 109.47035 * 65.86167 * 15 14 13 17 17 H 1.09007 * 110.35500 * 298.88452 * 16 15 14 18 18 C 1.54273 * 110.39912 * 176.43562 * 16 15 14 19 19 C 1.53862 * 108.92256 * 213.24933 * 18 16 15 20 20 C 1.55134 * 106.89930 * 47.25777 * 19 18 16 21 21 S 1.83093 * 110.40382 * 61.20262 * 16 15 14 22 22 C 1.46853 * 111.23181 * 61.72115 * 14 13 12 23 23 H 0.97000 * 120.00374 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.52186 * 302.31347 * 11 9 7 25 25 H 1.09002 * 109.51761 * 62.43279 * 11 9 7 26 26 H 1.08996 * 109.50585 * 177.59161 * 12 11 9 27 27 H 1.09002 * 109.50498 * 297.71518 * 12 11 9 28 28 H 1.08991 * 109.46298 * 60.83667 * 13 12 11 29 29 H 1.09000 * 109.45944 * 180.80338 * 13 12 11 30 30 H 1.08998 * 109.46659 * 185.85445 * 15 14 13 31 31 H 1.08996 * 109.47230 * 305.85879 * 15 14 13 32 32 H 1.08993 * 109.60893 * 333.17188 * 18 16 15 33 33 H 1.09000 * 109.60947 * 93.33320 * 18 16 15 34 34 H 1.08996 * 109.97526 * 287.89374 * 19 18 16 35 35 H 1.09007 * 110.00512 * 166.63252 * 19 18 16 36 36 H 1.08995 * 110.85784 * 199.70459 * 20 19 18 37 37 H 1.09000 * 111.03467 * 76.13783 * 20 19 18 38 38 H 1.09001 * 109.49269 * 178.28184 * 22 14 13 39 39 H 1.09003 * 109.42621 * 58.31180 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0073 10 1 0.6244 -2.5621 -0.8823 11 6 0.3720 -2.5754 1.2586 12 6 -0.3436 -3.9287 1.2883 13 6 0.6966 -5.0510 1.2602 14 7 1.5115 -4.9346 0.0441 15 6 2.4289 -6.0745 -0.0859 16 6 1.6221 -7.3559 -0.3049 17 1 0.9682 -7.5425 0.5471 18 6 2.5671 -8.5538 -0.5332 19 6 1.8997 -9.5364 -1.5113 20 6 1.3619 -8.6953 -2.6987 21 16 0.6427 -7.2380 -1.8473 22 6 2.2451 -3.6627 0.0153 23 1 -0.4851 0.8400 -0.0004 24 1 0.9942 -2.4727 2.1477 25 1 -0.3652 -1.7728 1.2352 26 1 -0.9380 -4.0062 2.1987 27 1 -0.9954 -4.0149 0.4189 28 1 1.3393 -4.9725 2.1370 29 1 0.1898 -6.0160 1.2669 30 1 3.0912 -5.9125 -0.9363 31 1 3.0218 -6.1693 0.8237 32 1 3.5089 -8.2018 -0.9540 33 1 2.7580 -9.0552 0.4156 34 1 1.0764 -10.0521 -1.0171 35 1 2.6313 -10.2608 -1.8693 36 1 0.5945 -9.2428 -3.2459 37 1 2.1714 -8.3956 -3.3642 38 1 2.8626 -3.6193 -0.8819 39 1 2.8811 -3.5910 0.8976 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260057815.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:33 Heat of formation + Delta-G solvation = -15.517724 kcal Electronic energy + Delta-G solvation = -17426.283370 eV Core-core repulsion = 14879.885802 eV Total energy + Delta-G solvation = -2546.397567 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.38581 -36.26657 -33.77481 -31.93897 -30.10637 -29.39733 -25.98957 -24.91789 -23.37116 -21.70920 -21.16981 -20.46912 -18.53659 -16.57367 -16.35241 -15.65946 -15.16721 -14.53646 -14.21044 -14.06298 -13.73601 -13.18910 -13.05078 -12.55095 -12.52528 -12.31436 -11.78737 -11.63250 -11.49493 -11.28602 -11.04731 -10.88922 -10.86205 -10.62467 -10.54345 -10.02729 -9.77898 -9.59755 -9.39937 -8.96513 -8.64486 -8.24246 -7.57916 -7.35251 -5.91453 -3.97708 1.99019 2.62904 3.35721 3.40388 3.42647 4.27542 4.49549 4.54650 4.70867 4.84338 4.97102 5.15384 5.35151 5.38297 5.47061 5.48634 5.60770 5.69497 5.70392 5.79535 5.89284 5.92276 6.08680 6.13202 6.33890 6.46205 6.57922 6.78015 6.81677 7.03874 7.29269 7.46244 7.72796 7.80641 7.88165 8.16376 8.24615 8.54402 9.06238 9.66130 11.14422 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.038482 B = 0.004837 C = 0.004728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.435871 B = 5787.202425 C = 5920.139828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.515 4.515 8 H 0.052 0.948 9 C 0.056 3.944 10 H 0.035 0.965 11 C -0.110 4.110 12 C -0.116 4.116 13 C 0.061 3.939 14 N -0.529 5.529 15 C 0.070 3.930 16 C -0.041 4.041 17 H 0.096 0.904 18 C -0.127 4.127 19 C -0.125 4.125 20 C -0.096 4.096 21 S -0.237 6.237 22 C 0.071 3.929 23 H 0.260 0.740 24 H 0.028 0.972 25 H 0.090 0.910 26 H 0.044 0.956 27 H 0.061 0.939 28 H 0.020 0.980 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.033 0.967 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.059 0.941 39 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.376 -17.711 -0.396 18.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.553 4.553 8 H 0.070 0.930 9 C 0.037 3.963 10 H 0.053 0.947 11 C -0.148 4.148 12 C -0.154 4.154 13 C -0.067 4.067 14 N -0.253 5.253 15 C -0.060 4.060 16 C -0.171 4.171 17 H 0.114 0.886 18 C -0.166 4.166 19 C -0.163 4.163 20 C -0.244 4.244 21 S -0.011 6.011 22 C -0.056 4.056 23 H 0.070 0.930 24 H 0.047 0.953 25 H 0.109 0.891 26 H 0.063 0.937 27 H 0.080 0.920 28 H 0.039 0.961 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.051 0.949 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.114 0.886 37 H 0.104 0.896 38 H 0.077 0.923 39 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 2.057 -16.799 -1.144 16.963 hybrid contribution 1.927 0.108 1.149 2.246 sum 3.984 -16.691 0.004 17.160 Atomic orbital electron populations 1.69885 1.05821 1.26353 1.50631 1.24924 0.94804 0.98866 0.95186 0.86703 0.79618 0.83402 0.78499 1.20319 1.21335 1.20449 1.21113 0.92736 0.90747 1.50741 0.92981 1.18647 0.92612 0.90166 0.94876 0.94662 1.21646 1.00019 0.94730 0.98400 1.21654 0.97175 0.96416 1.00138 1.22073 0.95769 0.98744 0.90090 1.61957 1.23811 1.01963 1.37600 1.22100 0.93810 0.89698 1.00351 1.23888 0.98360 0.97112 0.97700 0.88599 1.22392 0.99214 0.94676 1.00306 1.22520 1.00827 0.98151 0.94834 1.24298 1.03129 0.97285 0.99735 1.88184 1.54930 1.38614 1.19336 1.22285 0.96371 0.88364 0.98570 0.93045 0.95331 0.89130 0.93710 0.92014 0.96142 0.92569 0.90392 0.94909 0.90625 0.90309 0.90618 0.90365 0.88570 0.89578 0.92251 0.96540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 11.35 55.43 0.63 -25.18 16 2 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 3 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.51 -14.37 8.57 -34.44 -0.30 -14.66 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.06 1.43 2.26 -91.69 -0.21 1.23 16 10 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 11 C -0.11 -2.67 5.02 -26.61 -0.13 -2.81 16 12 C -0.12 -2.37 6.09 -26.65 -0.16 -2.53 16 13 C 0.06 1.11 5.30 -3.83 -0.02 1.09 16 14 N -0.53 -10.01 4.30 -234.66 -1.01 -11.02 16 15 C 0.07 1.07 4.36 -3.82 -0.02 1.05 16 16 C -0.04 -0.54 3.08 -26.07 -0.08 -0.62 16 17 H 0.10 1.26 6.54 -51.93 -0.34 0.92 16 18 C -0.13 -1.22 5.94 -25.62 -0.15 -1.37 16 19 C -0.12 -1.06 6.46 -25.15 -0.16 -1.23 16 20 C -0.10 -0.99 7.38 38.29 0.28 -0.71 16 21 S -0.24 -3.51 22.37 -107.50 -2.40 -5.91 16 22 C 0.07 1.54 4.68 -3.83 -0.02 1.53 16 23 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 24 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.09 2.46 6.14 -51.93 -0.32 2.14 16 26 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.92 6.26 -51.93 -0.32 0.59 16 30 H 0.08 1.19 7.94 -51.93 -0.41 0.78 16 31 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 32 H 0.08 0.71 7.82 -51.93 -0.41 0.31 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 1.29 8.02 -51.93 -0.42 0.87 16 39 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 309.77 15.07 4.67 4.67 Total: -1.00 -29.25 309.77 -11.03 -40.27 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -6.83 Total: -2.02 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: -1.06 Total: -17.34 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: -0.38 Total: -36.20 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -2.40 Total: -5.91 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.25 -11.03 -40.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260057815.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.757 kcal (2) G-P(sol) polarization free energy of solvation -29.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds