Wall clock time and date at job start Mon Mar 30 2020 06:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99601 * 2 1 4 4 H 1.48503 * 109.46785 * 239.99514 * 3 2 1 5 5 H 1.48495 * 109.47101 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47220 * 119.99603 * 3 2 1 7 7 C 1.37872 * 120.00480 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00302 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99731 * 359.72959 * 7 2 1 10 10 H 1.09004 * 109.50559 * 60.27708 * 9 7 2 11 11 C 1.53123 * 109.50516 * 300.19486 * 9 7 2 12 12 C 1.53115 * 109.16278 * 182.40360 * 11 9 7 13 13 C 1.53046 * 109.27668 * 57.65471 * 12 11 9 14 14 N 1.46850 * 109.52387 * 300.81989 * 13 12 11 15 15 C 1.46900 * 110.99865 * 185.83909 * 14 13 12 16 16 C 1.52999 * 109.47035 * 65.86167 * 15 14 13 17 17 H 1.09007 * 110.35500 * 298.88452 * 16 15 14 18 18 C 1.54273 * 110.39912 * 176.43562 * 16 15 14 19 19 C 1.53862 * 108.92256 * 213.24933 * 18 16 15 20 20 C 1.55134 * 106.89930 * 47.25777 * 19 18 16 21 21 S 1.83093 * 110.40382 * 61.20262 * 16 15 14 22 22 C 1.46853 * 111.23181 * 61.72115 * 14 13 12 23 23 H 0.97000 * 120.00374 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.52186 * 302.31347 * 11 9 7 25 25 H 1.09002 * 109.51761 * 62.43279 * 11 9 7 26 26 H 1.08996 * 109.50585 * 177.59161 * 12 11 9 27 27 H 1.09002 * 109.50498 * 297.71518 * 12 11 9 28 28 H 1.08991 * 109.46298 * 60.83667 * 13 12 11 29 29 H 1.09000 * 109.45944 * 180.80338 * 13 12 11 30 30 H 1.08998 * 109.46659 * 185.85445 * 15 14 13 31 31 H 1.08996 * 109.47230 * 305.85879 * 15 14 13 32 32 H 1.08993 * 109.60893 * 333.17188 * 18 16 15 33 33 H 1.09000 * 109.60947 * 93.33320 * 18 16 15 34 34 H 1.08996 * 109.97526 * 287.89374 * 19 18 16 35 35 H 1.09007 * 110.00512 * 166.63252 * 19 18 16 36 36 H 1.08995 * 110.85784 * 199.70459 * 20 19 18 37 37 H 1.09000 * 111.03467 * 76.13783 * 20 19 18 38 38 H 1.09001 * 109.49269 * 178.28184 * 22 14 13 39 39 H 1.09003 * 109.42621 * 58.31180 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0073 10 1 0.6244 -2.5621 -0.8823 11 6 0.3720 -2.5754 1.2586 12 6 -0.3436 -3.9287 1.2883 13 6 0.6966 -5.0510 1.2602 14 7 1.5115 -4.9346 0.0441 15 6 2.4289 -6.0745 -0.0859 16 6 1.6221 -7.3559 -0.3049 17 1 0.9682 -7.5425 0.5471 18 6 2.5671 -8.5538 -0.5332 19 6 1.8997 -9.5364 -1.5113 20 6 1.3619 -8.6953 -2.6987 21 16 0.6427 -7.2380 -1.8473 22 6 2.2451 -3.6627 0.0153 23 1 -0.4851 0.8400 -0.0004 24 1 0.9942 -2.4727 2.1477 25 1 -0.3652 -1.7728 1.2352 26 1 -0.9380 -4.0062 2.1987 27 1 -0.9954 -4.0149 0.4189 28 1 1.3393 -4.9725 2.1370 29 1 0.1898 -6.0160 1.2669 30 1 3.0912 -5.9125 -0.9363 31 1 3.0218 -6.1693 0.8237 32 1 3.5089 -8.2018 -0.9540 33 1 2.7580 -9.0552 0.4156 34 1 1.0764 -10.0521 -1.0171 35 1 2.6313 -10.2608 -1.8693 36 1 0.5945 -9.2428 -3.2459 37 1 2.1714 -8.3956 -3.3642 38 1 2.8626 -3.6193 -0.8819 39 1 2.8811 -3.5910 0.8976 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260057815.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:33 Heat of formation + Delta-G solvation = -32.013444 kcal Electronic energy + Delta-G solvation = -17426.998678 eV Core-core repulsion = 14879.885802 eV Total energy + Delta-G solvation = -2547.112875 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.94604 -37.28813 -35.48751 -33.66818 -31.79160 -30.78730 -27.07863 -26.90547 -24.67471 -23.41928 -22.43415 -21.51962 -20.35669 -18.42779 -17.58914 -16.89076 -16.53996 -16.32852 -15.65331 -15.18066 -15.00338 -14.81091 -14.35893 -14.30295 -13.94954 -13.65526 -13.32125 -12.95951 -12.82141 -12.60438 -12.56754 -12.31932 -12.27940 -11.96915 -11.83687 -11.72434 -11.63842 -11.38322 -10.83126 -10.66931 -10.56822 -10.37121 -9.06597 -8.50250 -8.06821 -6.21809 1.02155 1.41399 1.43322 1.50894 1.70000 2.43222 3.04907 3.19720 3.69658 3.76355 4.01177 4.06357 4.19679 4.20365 4.34142 4.42813 4.46271 4.54882 4.62343 4.66929 4.75488 4.77591 4.88232 4.93778 4.98641 5.00575 5.01557 5.09844 5.18511 5.25831 5.39111 5.51762 5.63170 5.96755 6.13420 6.21758 6.37982 6.46634 6.91032 7.46115 8.97712 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.038482 B = 0.004837 C = 0.004728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.435871 B = 5787.202425 C = 5920.139828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.013 3.987 3 Si 0.956 3.044 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.537 4.537 8 H 0.052 0.948 9 C 0.054 3.946 10 H -0.010 1.010 11 C -0.102 4.102 12 C -0.109 4.109 13 C 0.068 3.932 14 N -0.543 5.543 15 C 0.071 3.929 16 C -0.024 4.024 17 H 0.097 0.903 18 C -0.122 4.122 19 C -0.117 4.117 20 C -0.075 4.075 21 S -0.335 6.335 22 C 0.086 3.914 23 H 0.260 0.740 24 H 0.024 0.976 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.042 0.958 28 H 0.029 0.971 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.090 0.910 38 H 0.053 0.947 39 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.914 -19.802 0.295 20.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.185 4.185 3 Si 0.781 3.219 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.576 4.576 8 H 0.070 0.930 9 C 0.035 3.965 10 H 0.008 0.992 11 C -0.140 4.140 12 C -0.147 4.147 13 C -0.060 4.060 14 N -0.267 5.267 15 C -0.058 4.058 16 C -0.152 4.152 17 H 0.115 0.885 18 C -0.161 4.161 19 C -0.156 4.156 20 C -0.223 4.223 21 S -0.110 6.110 22 C -0.041 4.041 23 H 0.069 0.931 24 H 0.043 0.957 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.061 0.939 28 H 0.047 0.953 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.120 0.880 34 H 0.099 0.901 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.109 0.891 38 H 0.072 0.928 39 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 3.603 -18.913 -0.455 19.258 hybrid contribution 1.431 0.721 0.878 1.827 sum 5.035 -18.192 0.424 18.880 Atomic orbital electron populations 1.70047 1.07289 1.27116 1.51159 1.25747 0.95644 1.02421 0.94722 0.85650 0.78390 0.78984 0.78845 1.19673 1.20940 1.19500 1.21498 0.92986 0.92161 1.50942 0.92956 1.18556 0.92966 0.91447 0.93500 0.99170 1.21440 0.99073 0.96091 0.97391 1.21557 0.97566 0.95116 1.00478 1.22020 0.95193 0.98725 0.90038 1.61865 1.24667 1.01872 1.38303 1.22160 0.93576 0.89138 1.00908 1.23845 0.98174 0.97251 0.95966 0.88483 1.22424 0.98378 0.93488 1.01860 1.22526 1.01542 0.97896 0.93616 1.24376 1.03115 0.94691 1.00162 1.88506 1.57116 1.42812 1.22539 1.21917 0.95177 0.88768 0.98253 0.93097 0.95708 0.92516 0.91313 0.93875 0.95268 0.90039 0.90807 0.93217 0.90232 0.88000 0.90136 0.87554 0.87442 0.89112 0.92848 0.96468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.07 11.35 21.45 0.24 -54.83 16 2 C 0.01 0.76 5.30 84.65 0.45 1.21 16 3 Si 0.96 44.73 29.54 68.60 2.03 46.76 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 5 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.54 -30.81 8.57 25.60 0.22 -30.59 16 8 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 9 C 0.05 2.89 2.26 -11.49 -0.03 2.87 16 10 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 11 C -0.10 -5.10 5.02 30.67 0.15 -4.95 16 12 C -0.11 -4.48 6.09 30.65 0.19 -4.29 16 13 C 0.07 2.37 5.30 86.33 0.46 2.83 16 14 N -0.54 -20.31 4.30 -896.33 -3.85 -24.16 16 15 C 0.07 2.04 4.36 86.30 0.38 2.42 16 16 C -0.02 -0.56 3.08 31.03 0.10 -0.46 16 17 H 0.10 2.27 6.54 -2.38 -0.02 2.26 16 18 C -0.12 -1.90 5.94 31.32 0.19 -1.71 16 19 C -0.12 -1.55 6.46 31.62 0.20 -1.34 16 20 C -0.08 -1.38 7.38 72.71 0.54 -0.84 16 21 S -0.34 -9.77 22.37 -56.49 -1.26 -11.03 16 22 C 0.09 3.81 4.68 86.32 0.40 4.22 16 23 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 24 H 0.02 1.21 8.14 -2.39 -0.02 1.20 16 25 H 0.06 3.21 6.14 -2.39 -0.01 3.20 16 26 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 27 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.08 2.47 6.26 -2.39 -0.01 2.46 16 30 H 0.07 2.16 7.94 -2.39 -0.02 2.14 16 31 H 0.05 1.28 8.12 -2.39 -0.02 1.26 16 32 H 0.08 1.20 7.82 -2.39 -0.02 1.18 16 33 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.11 0.90 8.14 -2.38 -0.02 0.88 16 36 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.05 2.37 8.02 -2.39 -0.02 2.35 16 39 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -66.00 309.77 1.39 -64.61 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 0.99 Total: 9.29 kcal Atomic # 6 Polarization: -33.89 SS G_CDS: 3.24 Total: -30.64 kcal Atomic # 7 Polarization: -75.37 SS G_CDS: -3.61 Total: -78.98 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 16 Polarization: -9.77 SS G_CDS: -1.26 Total: -11.03 kcal Total: -66.00 1.39 -64.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260057815.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.598 kcal (2) G-P(sol) polarization free energy of solvation -66.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds