Wall clock time and date at job start Mon Mar 30 2020 06:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 120.00102 * 2 1 4 4 H 1.48500 * 109.47153 * 240.00417 * 3 2 1 5 5 H 1.48501 * 109.46786 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47205 * 120.00060 * 3 2 1 7 7 C 1.37874 * 120.00322 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00518 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00083 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.50396 * 300.08391 * 9 7 2 11 11 C 1.53128 * 109.53205 * 60.17924 * 9 7 2 12 12 C 1.53118 * 109.15827 * 177.61906 * 11 9 7 13 13 C 1.53035 * 109.27488 * 302.34140 * 12 11 9 14 14 N 1.46847 * 109.52322 * 59.18406 * 13 12 11 15 15 C 1.46901 * 110.99710 * 174.15616 * 14 13 12 16 16 C 1.52998 * 109.47480 * 294.20941 * 15 14 13 17 17 H 1.09002 * 110.75806 * 59.29960 * 16 15 14 18 18 C 1.55137 * 110.85809 * 182.79614 * 16 15 14 19 19 C 1.54388 * 106.63512 * 160.34873 * 18 16 15 20 20 C 1.54268 * 109.00597 * 312.81082 * 19 18 16 21 21 S 1.83101 * 104.64943 * 27.96083 * 20 19 18 22 22 C 1.46847 * 111.19825 * 298.25210 * 14 13 12 23 23 H 0.97001 * 120.00407 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.51959 * 297.52017 * 11 9 7 25 25 H 1.08994 * 109.52133 * 57.71115 * 11 9 7 26 26 H 1.08999 * 109.50548 * 62.28590 * 12 11 9 27 27 H 1.09002 * 109.50226 * 182.40427 * 12 11 9 28 28 H 1.08995 * 109.46626 * 299.16199 * 13 12 11 29 29 H 1.09007 * 109.45893 * 179.19591 * 13 12 11 30 30 H 1.09003 * 109.47178 * 174.20916 * 15 14 13 31 31 H 1.09003 * 109.47265 * 54.21011 * 15 14 13 32 32 H 1.09003 * 109.97607 * 279.86242 * 18 16 15 33 33 H 1.08999 * 109.97229 * 41.13676 * 18 16 15 34 34 H 1.09000 * 109.56006 * 192.87052 * 19 18 16 35 35 H 1.08999 * 109.57883 * 72.76140 * 19 18 16 36 36 H 1.08999 * 110.40293 * 269.17359 * 20 19 18 37 37 H 1.08995 * 110.50195 * 146.80107 * 20 19 18 38 38 H 1.08993 * 109.46047 * 181.75662 * 22 14 13 39 39 H 1.09001 * 109.46316 * 301.72993 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6234 -2.5571 0.8887 11 6 0.3731 -2.5835 -1.2523 12 6 -0.3425 -3.9370 -1.2739 13 6 0.6975 -5.0590 -1.2376 14 7 1.5112 -4.9347 -0.0215 15 6 2.4284 -6.0739 0.1168 16 6 1.6214 -7.3541 0.3414 17 1 0.9434 -7.5348 -0.4927 18 6 2.5617 -8.5683 0.5618 19 6 1.7194 -9.6590 1.2578 20 6 0.9387 -9.0218 2.4259 21 16 0.7009 -7.2764 1.9264 22 6 2.2449 -3.6629 -0.0012 23 1 -0.4851 0.8400 0.0004 24 1 -0.3649 -1.7815 -1.2342 25 1 0.9961 -2.4866 -2.1413 26 1 -0.9952 -4.0175 -0.4046 27 1 -0.9361 -4.0203 -2.1843 28 1 1.3411 -4.9862 -2.1143 29 1 0.1908 -6.0241 -1.2385 30 1 3.0893 -5.9070 0.9674 31 1 3.0231 -6.1739 -0.7913 32 1 2.9312 -8.9319 -0.3970 33 1 3.3982 -8.2806 1.1987 34 1 2.3772 -10.4395 1.6401 35 1 1.0196 -10.0917 0.5429 36 1 1.5195 -9.0778 3.3465 37 1 -0.0249 -9.5147 2.5548 38 1 2.8620 -3.6139 0.8959 39 1 2.8813 -3.5965 -0.8837 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260057819.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:35 Heat of formation + Delta-G solvation = -16.182248 kcal Electronic energy + Delta-G solvation = -17392.377277 eV Core-core repulsion = 14845.950894 eV Total energy + Delta-G solvation = -2546.426383 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.38276 -36.21752 -33.79644 -31.96417 -30.11119 -29.42876 -25.98901 -24.92394 -23.38387 -21.71150 -21.20594 -20.44435 -18.54663 -16.57843 -16.35710 -15.60546 -15.14695 -14.54604 -14.35543 -14.08325 -13.75472 -13.24693 -12.96166 -12.58159 -12.53127 -12.30133 -11.81271 -11.71589 -11.44876 -11.24635 -11.03841 -10.89342 -10.88482 -10.62606 -10.56476 -10.03461 -9.78474 -9.60197 -9.40954 -8.97087 -8.65252 -8.24942 -7.63638 -7.37031 -5.91916 -3.98154 1.96904 2.62024 3.35616 3.40257 3.42549 4.25285 4.49406 4.54353 4.72416 4.78640 4.98596 5.13904 5.30614 5.37968 5.45170 5.50473 5.61293 5.68324 5.70071 5.77123 5.88339 5.91190 6.08560 6.12707 6.33087 6.45194 6.56947 6.77350 6.80961 7.02880 7.28433 7.45052 7.71202 7.79944 7.86484 8.15413 8.23683 8.53702 9.05744 9.65746 11.14069 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.039978 B = 0.004746 C = 0.004665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.216616 B = 5898.158675 C = 6000.234063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.890 3.110 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.515 4.515 8 H 0.052 0.948 9 C 0.056 3.944 10 H 0.035 0.965 11 C -0.110 4.110 12 C -0.116 4.116 13 C 0.061 3.939 14 N -0.532 5.532 15 C 0.072 3.928 16 C -0.039 4.039 17 H 0.094 0.906 18 C -0.126 4.126 19 C -0.126 4.126 20 C -0.098 4.098 21 S -0.237 6.237 22 C 0.070 3.930 23 H 0.260 0.740 24 H 0.090 0.910 25 H 0.028 0.972 26 H 0.061 0.939 27 H 0.044 0.956 28 H 0.021 0.979 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.036 0.964 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.059 0.941 39 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.998 -17.887 -0.060 18.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.554 4.554 8 H 0.070 0.930 9 C 0.037 3.963 10 H 0.053 0.947 11 C -0.148 4.148 12 C -0.154 4.154 13 C -0.066 4.066 14 N -0.256 5.256 15 C -0.058 4.058 16 C -0.168 4.168 17 H 0.112 0.888 18 C -0.165 4.165 19 C -0.164 4.164 20 C -0.246 4.246 21 S -0.011 6.011 22 C -0.057 4.057 23 H 0.070 0.930 24 H 0.108 0.892 25 H 0.047 0.953 26 H 0.080 0.920 27 H 0.063 0.937 28 H 0.039 0.961 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.054 0.946 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 1.941 -16.858 0.888 16.993 hybrid contribution 1.598 -0.069 -1.322 2.075 sum 3.538 -16.927 -0.433 17.299 Atomic orbital electron populations 1.69883 1.05828 1.26367 1.50597 1.24922 0.94806 0.98875 0.95169 0.86701 0.79621 0.83388 0.78507 1.20436 1.21332 1.20315 1.21112 0.92740 0.90730 1.50792 0.92967 1.18648 0.92608 0.90167 0.94877 0.94689 1.21647 0.99994 0.94724 0.98416 1.21657 0.97186 0.96398 1.00168 1.22073 0.95757 0.98796 0.90015 1.61983 1.23856 1.01983 1.37767 1.21962 0.93853 0.89344 1.00592 1.24136 0.98402 0.97286 0.97013 0.88808 1.22749 0.98610 0.93607 1.01533 1.22329 0.98864 0.98590 0.96637 1.24039 1.03167 0.96469 1.00932 1.88261 1.73634 1.12363 1.26888 1.22294 0.96398 0.88348 0.98630 0.93039 0.89170 0.95297 0.91986 0.93682 0.96106 0.92475 0.90146 0.94573 0.90128 0.90251 0.90455 0.91033 0.89482 0.89249 0.92246 0.96447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.79 11.36 55.43 0.63 -25.16 16 2 C 0.06 1.78 5.31 -17.82 -0.09 1.69 16 3 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.51 -14.36 8.56 -34.44 -0.29 -14.66 16 8 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 9 C 0.06 1.43 2.26 -91.69 -0.21 1.22 16 10 H 0.03 1.01 8.14 -51.93 -0.42 0.59 16 11 C -0.11 -2.66 5.03 -26.60 -0.13 -2.79 16 12 C -0.12 -2.36 6.09 -26.65 -0.16 -2.52 16 13 C 0.06 1.11 5.30 -3.83 -0.02 1.09 16 14 N -0.53 -10.02 4.42 -234.67 -1.04 -11.06 16 15 C 0.07 1.09 4.50 -3.82 -0.02 1.07 16 16 C -0.04 -0.51 3.04 -25.60 -0.08 -0.59 16 17 H 0.09 1.22 6.49 -51.93 -0.34 0.88 16 18 C -0.13 -1.21 5.94 -24.87 -0.15 -1.36 16 19 C -0.13 -1.07 6.40 -25.34 -0.16 -1.23 16 20 C -0.10 -1.00 7.34 37.82 0.28 -0.72 16 21 S -0.24 -3.51 22.51 -107.50 -2.42 -5.93 16 22 C 0.07 1.52 4.68 -3.84 -0.02 1.50 16 23 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 24 H 0.09 2.44 6.16 -51.93 -0.32 2.12 16 25 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.92 6.23 -51.92 -0.32 0.60 16 30 H 0.08 1.23 7.99 -51.93 -0.41 0.81 16 31 H 0.04 0.51 8.12 -51.93 -0.42 0.09 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 1.29 8.01 -51.93 -0.42 0.87 16 39 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 310.29 15.07 4.68 4.68 Total: -1.00 -29.20 310.29 -11.07 -40.27 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -6.84 Total: -2.03 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: -1.06 Total: -17.29 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: -0.41 Total: -36.22 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -2.42 Total: -5.93 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.20 -11.07 -40.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260057819.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.087 kcal (2) G-P(sol) polarization free energy of solvation -29.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds