Wall clock time and date at job start Mon Mar 30 2020 06:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99863 * 2 1 4 4 H 1.48503 * 109.46745 * 264.70705 * 3 2 1 5 5 H 1.48498 * 109.47347 * 24.70669 * 3 2 1 6 6 H 1.48501 * 109.47162 * 144.71397 * 3 2 1 7 7 C 1.37878 * 119.99799 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00148 * 4.59224 * 7 2 1 9 9 C 1.50697 * 119.99850 * 184.58763 * 7 2 1 10 10 H 1.09007 * 109.46019 * 335.08536 * 9 7 2 11 11 C 1.53033 * 109.46191 * 95.06325 * 9 7 2 12 12 C 1.53122 * 109.27913 * 179.19570 * 11 9 7 13 13 C 1.53123 * 109.15999 * 302.34633 * 12 11 9 14 14 C 1.53033 * 109.27632 * 57.65310 * 13 12 11 15 15 N 1.46846 * 109.46081 * 215.10735 * 9 7 2 16 16 C 1.46899 * 111.00352 * 54.14825 * 15 9 7 17 17 C 1.53000 * 109.47285 * 176.41865 * 16 15 9 18 18 H 1.09000 * 109.59570 * 301.88199 * 17 16 15 19 19 C 1.52934 * 109.60106 * 181.56064 * 17 16 15 20 20 C 1.53716 * 112.48743 * 209.96548 * 19 17 16 21 21 S 1.83390 * 104.96931 * 2.82798 * 20 19 17 22 22 C 1.55151 * 109.60384 * 62.02291 * 17 16 15 23 23 H 0.97000 * 119.99915 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.50244 * 299.13638 * 11 9 7 25 25 H 1.08995 * 109.50412 * 59.21571 * 11 9 7 26 26 H 1.08997 * 109.52302 * 62.24685 * 12 11 9 27 27 H 1.08995 * 109.52312 * 182.44252 * 12 11 9 28 28 H 1.08998 * 109.50416 * 177.59851 * 13 12 11 29 29 H 1.09004 * 109.50251 * 297.71406 * 13 12 11 30 30 H 1.09000 * 109.46157 * 60.83923 * 14 13 12 31 31 H 1.09002 * 109.46158 * 180.80640 * 14 13 12 32 32 H 1.09006 * 109.46901 * 296.41690 * 16 15 9 33 33 H 1.08999 * 109.47429 * 56.41500 * 16 15 9 34 34 H 1.09003 * 108.89312 * 330.75998 * 19 17 16 35 35 H 1.08999 * 108.89035 * 89.17504 * 19 17 16 36 36 H 1.09003 * 110.33667 * 121.70355 * 20 19 17 37 37 H 1.09005 * 110.33792 * 243.95016 * 20 19 17 38 38 H 1.09005 * 111.13270 * 279.27713 * 22 17 16 39 39 H 1.08995 * 111.13372 * 43.45970 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6085 1.9818 -1.3942 5 1 1.3952 2.6824 0.5852 6 1 3.4864 1.4750 0.8088 7 6 2.0046 -1.1941 0.0005 8 1 1.4671 -2.1279 -0.0739 9 6 3.5079 -1.1961 0.1049 10 1 3.8989 -0.2481 -0.2647 11 6 3.9172 -1.3809 1.5679 12 6 5.4451 -1.4025 1.6666 13 6 5.9900 -2.5270 0.7816 14 6 5.5206 -2.3089 -0.6586 15 7 4.0527 -2.2971 -0.6997 16 6 3.5656 -2.2288 -2.0839 17 6 4.2225 -3.3357 -2.9110 18 1 5.3063 -3.2257 -2.8736 19 6 3.7470 -3.2431 -4.3616 20 6 3.7199 -4.6122 -5.0600 21 16 4.2114 -5.8142 -3.7651 22 6 3.8235 -4.7208 -2.3371 23 1 -0.4850 0.8401 -0.0004 24 1 3.5258 -0.5554 2.1623 25 1 3.5144 -2.3220 1.9424 26 1 5.8454 -0.4467 1.3287 27 1 5.7408 -1.5773 2.7010 28 1 7.0794 -2.5203 0.8142 29 1 5.6204 -3.4865 1.1435 30 1 5.9020 -1.3557 -1.0245 31 1 5.8950 -3.1157 -1.2887 32 1 2.4835 -2.3603 -2.0952 33 1 3.8180 -1.2580 -2.5105 34 1 2.7431 -2.8189 -4.3776 35 1 4.4159 -2.5802 -4.9106 36 1 2.7154 -4.8335 -5.4208 37 1 4.4324 -4.6310 -5.8847 38 1 4.4318 -4.9768 -1.4696 39 1 2.7616 -4.7543 -2.0937 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260061747.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:51 Heat of formation + Delta-G solvation = -29.541594 kcal Electronic energy + Delta-G solvation = -17993.107777 eV Core-core repulsion = 15446.102089 eV Total energy + Delta-G solvation = -2547.005688 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.24156 -37.48505 -34.85904 -33.83819 -32.04700 -30.43696 -27.89598 -26.96899 -25.12678 -23.44403 -22.48344 -20.76998 -20.26978 -19.01450 -17.57898 -17.17209 -16.56120 -15.89718 -15.75288 -15.16429 -14.89882 -14.79050 -14.61911 -14.49839 -14.01574 -13.79717 -13.64567 -12.93675 -12.82484 -12.68961 -12.48823 -12.35868 -12.24915 -12.14557 -11.89199 -11.72281 -11.59626 -11.48256 -10.94684 -10.83827 -10.75302 -10.65144 -8.91342 -8.69969 -8.29269 -6.30811 0.97268 1.27263 1.31031 1.40259 1.42064 2.30471 3.00673 3.21673 3.64084 3.77126 4.04769 4.10303 4.12390 4.17397 4.26782 4.32452 4.48248 4.54625 4.63360 4.70057 4.73902 4.80663 4.82930 4.84357 4.93423 5.02296 5.04908 5.14930 5.20153 5.23237 5.29060 5.37586 5.45509 5.57041 5.75515 6.13049 6.43468 6.74024 6.80876 7.35454 8.87446 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.021131 B = 0.007416 C = 0.006128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.722532 B = 3774.871463 C = 4568.374571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.018 3.982 3 Si 0.929 3.071 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.250 1.250 7 C -0.495 4.495 8 H 0.037 0.963 9 C 0.190 3.810 10 H -0.008 1.008 11 C -0.105 4.105 12 C -0.121 4.121 13 C -0.107 4.107 14 C 0.044 3.956 15 N -0.533 5.533 16 C 0.087 3.913 17 C -0.083 4.083 18 H 0.095 0.905 19 C -0.126 4.126 20 C -0.051 4.051 21 S -0.352 6.352 22 C -0.027 4.027 23 H 0.264 0.736 24 H 0.038 0.962 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.019 0.981 31 H 0.090 0.910 32 H 0.057 0.943 33 H 0.015 0.985 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.117 0.883 38 H 0.107 0.893 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.118 -4.902 -6.180 15.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.179 4.179 3 Si 0.754 3.246 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.174 1.174 7 C -0.534 4.534 8 H 0.055 0.945 9 C 0.083 3.917 10 H 0.010 0.990 11 C -0.143 4.143 12 C -0.158 4.158 13 C -0.145 4.145 14 C -0.084 4.084 15 N -0.258 5.258 16 C -0.043 4.043 17 C -0.103 4.103 18 H 0.113 0.887 19 C -0.165 4.165 20 C -0.199 4.199 21 S -0.126 6.126 22 C -0.175 4.175 23 H 0.074 0.926 24 H 0.057 0.943 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.092 0.908 28 H 0.105 0.895 29 H 0.084 0.916 30 H 0.037 0.963 31 H 0.108 0.892 32 H 0.075 0.925 33 H 0.033 0.967 34 H 0.085 0.915 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.135 0.865 38 H 0.125 0.875 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 13.234 -6.383 -6.052 15.891 hybrid contribution -0.778 2.822 -0.108 2.929 sum 12.456 -3.562 -6.161 14.345 Atomic orbital electron populations 1.70038 1.07922 1.27768 1.52817 1.25736 0.95297 1.02215 0.94701 0.86012 0.79550 0.79909 0.79138 1.19719 1.21349 1.17356 1.21068 0.90918 0.92783 1.48616 0.94472 1.19537 0.92885 0.87889 0.91415 0.99033 1.21667 0.95358 1.00333 0.96958 1.21658 0.94962 0.98739 1.00466 1.21535 1.00425 0.98676 0.93825 1.22318 0.87965 0.99907 0.98195 1.61951 1.07315 1.46344 1.10199 1.21816 0.99533 0.95218 0.87711 1.22159 1.01482 0.93173 0.93498 0.88699 1.21978 1.03378 0.96926 0.94199 1.23934 1.05434 0.92721 0.97797 1.87749 1.87318 1.30424 1.07103 1.24182 1.04007 0.93005 0.96278 0.92649 0.94310 0.92965 0.93183 0.90819 0.89513 0.91559 0.96298 0.89222 0.92454 0.96674 0.91465 0.88698 0.88748 0.86515 0.87470 0.90795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.88 13.96 21.45 0.30 -57.58 16 2 C 0.02 1.03 5.47 84.65 0.46 1.49 16 3 Si 0.93 43.60 26.98 68.60 1.85 45.45 16 4 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 6 H -0.25 -10.99 6.84 99.48 0.68 -10.31 16 7 C -0.50 -27.24 7.46 25.60 0.19 -27.05 16 8 H 0.04 2.32 7.98 -2.91 -0.02 2.29 16 9 C 0.19 8.55 1.49 44.19 0.07 8.62 16 10 H -0.01 -0.36 5.31 -2.38 -0.01 -0.38 16 11 C -0.10 -4.25 5.36 30.65 0.16 -4.08 16 12 C -0.12 -3.74 6.00 30.68 0.18 -3.55 16 13 C -0.11 -2.89 6.09 30.65 0.19 -2.70 16 14 C 0.04 1.31 5.05 86.32 0.44 1.75 16 15 N -0.53 -20.24 4.25 -875.50 -3.72 -23.96 16 16 C 0.09 3.16 3.89 86.30 0.34 3.50 16 17 C -0.08 -2.27 2.06 -10.08 -0.02 -2.29 16 18 H 0.09 2.38 6.08 -2.39 -0.01 2.37 16 19 C -0.13 -2.93 5.86 30.81 0.18 -2.75 16 20 C -0.05 -1.08 7.38 72.22 0.53 -0.54 16 21 S -0.35 -9.43 23.23 -56.49 -1.31 -10.74 16 22 C -0.03 -0.78 6.49 72.72 0.47 -0.31 16 23 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 24 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.05 2.19 8.14 -2.39 -0.02 2.18 16 26 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 30 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.09 2.30 5.67 -2.39 -0.01 2.29 16 32 H 0.06 2.50 7.01 -2.38 -0.02 2.48 16 33 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.07 1.72 7.79 -2.39 -0.02 1.70 16 35 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.09 1.88 8.14 -2.39 -0.02 1.87 16 37 H 0.12 1.95 8.14 -2.38 -0.02 1.93 16 38 H 0.11 3.07 8.05 -2.38 -0.02 3.05 16 39 H 0.07 2.43 8.10 -2.39 -0.02 2.41 16 Total: -1.00 -62.35 305.93 1.28 -61.07 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.97 Total: 13.67 kcal Atomic # 6 Polarization: -31.10 SS G_CDS: 3.19 Total: -27.91 kcal Atomic # 7 Polarization: -78.13 SS G_CDS: -3.42 Total: -81.55 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.85 Total: 45.45 kcal Atomic # 16 Polarization: -9.43 SS G_CDS: -1.31 Total: -10.74 kcal Total: -62.35 1.28 -61.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260061747.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.531 kcal (2) G-P(sol) polarization free energy of solvation -62.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds