Wall clock time and date at job start Mon Mar 30 2020 06:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99775 * 2 1 4 4 H 1.48503 * 109.46839 * 269.99847 * 3 2 1 5 5 H 1.48502 * 109.46913 * 150.00588 * 3 2 1 6 6 H 1.48496 * 109.47362 * 30.00192 * 3 2 1 7 7 C 1.37877 * 120.00315 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00007 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00115 * 179.97438 * 7 2 1 10 10 H 1.09003 * 109.46257 * 60.02408 * 9 7 2 11 11 C 1.53030 * 109.46501 * 300.05124 * 9 7 2 12 12 C 1.53116 * 109.28256 * 180.80413 * 11 9 7 13 13 C 1.53123 * 109.15807 * 57.65366 * 12 11 9 14 14 C 1.53037 * 109.28101 * 302.34527 * 13 12 11 15 15 N 1.46845 * 109.51788 * 59.17898 * 14 13 12 16 16 C 1.46901 * 111.00019 * 174.16089 * 15 14 13 17 17 C 1.52999 * 109.47255 * 277.22393 * 16 15 14 18 18 H 1.08999 * 109.60427 * 306.78110 * 17 16 15 19 19 C 1.52941 * 109.60488 * 186.45512 * 17 16 15 20 20 C 1.53716 * 112.48959 * 209.96845 * 19 17 16 21 21 S 1.83397 * 104.96859 * 2.82651 * 20 19 17 22 22 C 1.55162 * 109.60319 * 67.10142 * 17 16 15 23 23 H 0.97002 * 120.00068 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.50527 * 300.74995 * 11 9 7 25 25 H 1.09002 * 109.50632 * 60.86431 * 11 9 7 26 26 H 1.09002 * 109.52216 * 297.75074 * 12 11 9 27 27 H 1.08998 * 109.58008 * 177.58986 * 12 11 9 28 28 H 1.09002 * 109.50217 * 182.40465 * 13 12 11 29 29 H 1.09003 * 109.53657 * 62.31074 * 13 12 11 30 30 H 1.09000 * 109.46127 * 299.16840 * 14 13 12 31 31 H 1.09002 * 109.46296 * 179.19494 * 14 13 12 32 32 H 1.09007 * 109.46704 * 37.21944 * 16 15 14 33 33 H 1.08995 * 109.47431 * 157.22184 * 16 15 14 34 34 H 1.08994 * 108.88710 * 330.76127 * 19 17 16 35 35 H 1.09000 * 108.88909 * 89.32107 * 19 17 16 36 36 H 1.08997 * 110.33759 * 121.69742 * 20 19 17 37 37 H 1.08997 * 110.34042 * 243.95213 * 20 19 17 38 38 H 1.09000 * 111.12966 * 279.28005 * 22 17 16 39 39 H 1.09001 * 111.12992 * 43.46063 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 3.5467 1.4402 0.6999 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 1 3.8750 -0.6806 0.8891 11 6 4.0210 -0.4711 -1.2500 12 6 5.5520 -0.4910 -1.2566 13 6 6.0358 -1.9430 -1.2079 14 6 5.4681 -2.6232 0.0399 15 7 4.0009 -2.5785 -0.0016 16 6 3.4193 -3.3427 1.1100 17 6 3.3711 -4.8263 0.7389 18 1 2.8609 -4.9478 -0.2166 19 6 2.6219 -5.6024 1.8231 20 6 3.1178 -7.0511 1.9581 21 16 4.5041 -7.1904 0.7655 22 6 4.8153 -5.3834 0.6323 23 1 -0.4850 0.8401 0.0004 24 1 3.6466 -0.9758 -2.1408 25 1 3.6705 0.5610 -1.2416 26 1 5.9270 0.0473 -0.3862 27 1 5.9196 -0.0149 -2.1656 28 1 7.1250 -1.9625 -1.1692 29 1 5.6938 -2.4713 -2.0979 30 1 5.8222 -2.1032 0.9300 31 1 5.7991 -3.6613 0.0701 32 1 4.0325 -3.2110 2.0016 33 1 2.4090 -2.9847 1.3078 34 1 2.7555 -5.0933 2.7775 35 1 1.5602 -5.6166 1.5770 36 1 3.4704 -7.2378 2.9724 37 1 2.3225 -7.7496 1.6979 38 1 5.2627 -5.1339 -0.3299 39 1 5.4352 -5.0284 1.4556 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260061751.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:54 Heat of formation + Delta-G solvation = 0.248673 kcal Electronic energy + Delta-G solvation = -17988.261289 eV Core-core repulsion = 15442.547404 eV Total energy + Delta-G solvation = -2545.713885 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.81535 -36.26056 -32.94746 -32.55458 -30.48607 -29.24404 -26.82480 -25.22718 -23.52298 -22.11780 -20.91054 -19.74348 -18.89463 -16.95831 -16.46742 -15.80569 -15.17924 -14.30134 -14.28806 -13.88046 -13.66260 -13.58825 -13.21274 -12.94969 -12.68198 -12.37360 -12.01518 -11.73527 -11.46771 -11.28531 -11.08999 -10.91681 -10.65446 -10.47586 -10.37774 -10.32096 -10.06551 -9.91713 -9.55801 -9.21082 -8.94184 -8.58172 -7.63030 -7.40387 -6.13068 -4.11777 2.00331 2.45685 3.22626 3.33048 3.34505 4.34493 4.51890 4.77016 4.93918 5.14609 5.16670 5.22181 5.34081 5.41936 5.44341 5.58190 5.60114 5.74368 5.84652 5.87644 5.95672 6.05701 6.09484 6.12913 6.23052 6.30192 6.42510 6.51216 6.59451 6.64915 6.67974 6.78742 6.89513 7.27047 7.57025 7.92787 8.05185 8.59479 8.92137 9.49202 10.99246 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.025572 B = 0.006873 C = 0.005636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.699565 B = 4073.230315 C = 4967.304279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.268 1.268 6 H -0.297 1.297 7 C -0.510 4.510 8 H 0.085 0.915 9 C 0.190 3.810 10 H -0.003 1.003 11 C -0.117 4.117 12 C -0.125 4.125 13 C -0.111 4.111 14 C 0.039 3.961 15 N -0.522 5.522 16 C 0.065 3.935 17 C -0.082 4.082 18 H 0.094 0.906 19 C -0.126 4.126 20 C -0.062 4.062 21 S -0.329 6.329 22 C -0.052 4.052 23 H 0.264 0.736 24 H 0.069 0.931 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.020 0.980 31 H 0.075 0.925 32 H 0.023 0.977 33 H 0.105 0.895 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.112 0.888 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.318 -7.957 2.463 12.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.713 3.287 4 H -0.204 1.204 5 H -0.193 1.193 6 H -0.225 1.225 7 C -0.548 4.548 8 H 0.102 0.898 9 C 0.082 3.918 10 H 0.014 0.986 11 C -0.154 4.154 12 C -0.163 4.163 13 C -0.149 4.149 14 C -0.090 4.090 15 N -0.246 5.246 16 C -0.065 4.065 17 C -0.103 4.103 18 H 0.113 0.887 19 C -0.165 4.165 20 C -0.210 4.210 21 S -0.102 6.102 22 C -0.199 4.199 23 H 0.074 0.926 24 H 0.088 0.912 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.038 0.962 31 H 0.093 0.907 32 H 0.041 0.959 33 H 0.123 0.877 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.113 0.887 38 H 0.130 0.870 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.530 -9.049 1.514 13.229 hybrid contribution 0.176 2.373 1.222 2.675 sum 9.707 -6.676 2.737 12.094 Atomic orbital electron populations 1.69873 1.06123 1.26961 1.50543 1.24908 0.94687 0.98775 0.94596 0.86924 0.79802 0.83930 0.78012 1.20439 1.19338 1.22483 1.21007 0.88239 0.94689 1.50825 0.89754 1.19637 0.95956 0.83967 0.92209 0.98593 1.21977 0.92559 0.99469 1.01434 1.21669 0.98061 0.96189 1.00385 1.21514 0.98326 0.96232 0.98782 1.22460 0.90020 1.00033 0.96469 1.61721 1.04174 1.15257 1.43410 1.22163 1.02566 0.90756 0.90988 1.22076 0.92394 0.95734 1.00054 0.88740 1.21997 1.01741 0.92498 1.00286 1.23879 0.97376 1.00071 0.99665 1.87698 1.46216 1.15195 1.61138 1.24786 1.00568 0.89297 1.05288 0.92571 0.91227 0.93434 0.93222 0.93026 0.92797 0.91384 0.96154 0.90690 0.95877 0.87683 0.91027 0.90023 0.89722 0.88746 0.87018 0.89818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.53 13.96 55.43 0.77 -25.76 16 2 C 0.07 2.02 5.45 -17.82 -0.10 1.92 16 3 Si 0.88 21.46 24.36 -169.99 -4.14 17.32 16 4 H -0.28 -6.61 6.87 56.52 0.39 -6.22 16 5 H -0.27 -6.31 6.53 56.52 0.37 -5.94 16 6 H -0.30 -7.27 7.11 56.52 0.40 -6.87 16 7 C -0.51 -13.57 8.12 -34.44 -0.28 -13.85 16 8 H 0.08 2.42 6.82 -52.48 -0.36 2.06 16 9 C 0.19 4.31 1.42 -68.88 -0.10 4.22 16 10 H 0.00 -0.08 7.20 -51.93 -0.37 -0.46 16 11 C -0.12 -2.49 4.84 -26.66 -0.13 -2.62 16 12 C -0.13 -2.18 6.00 -26.61 -0.16 -2.34 16 13 C -0.11 -1.71 6.09 -26.65 -0.16 -1.87 16 14 C 0.04 0.63 5.08 -3.83 -0.02 0.61 16 15 N -0.52 -10.06 4.37 -228.08 -1.00 -11.06 16 16 C 0.06 1.15 4.23 -3.82 -0.02 1.13 16 17 C -0.08 -1.22 2.76 -89.51 -0.25 -1.46 16 18 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 19 C -0.13 -1.62 5.86 -26.39 -0.15 -1.77 16 20 C -0.06 -0.72 7.38 37.53 0.28 -0.44 16 21 S -0.33 -4.56 23.22 -107.50 -2.50 -7.05 16 22 C -0.05 -0.71 4.90 38.30 0.19 -0.52 16 23 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 25 H 0.05 1.07 3.29 -51.93 -0.17 0.90 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 1.06 3.84 -51.93 -0.20 0.86 16 32 H 0.02 0.39 7.84 -51.93 -0.41 -0.02 16 33 H 0.11 2.17 5.65 -51.93 -0.29 1.87 16 34 H 0.07 0.88 7.80 -51.93 -0.41 0.48 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.11 1.53 6.62 -51.93 -0.34 1.19 16 39 H 0.08 1.08 7.75 -51.93 -0.40 0.67 16 LS Contribution 295.09 15.07 4.45 4.45 Total: -1.00 -28.30 295.09 -9.67 -37.97 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -6.36 Total: 1.13 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: -0.90 Total: -17.00 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: -0.22 Total: -36.81 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.14 Total: 17.32 kcal Atomic # 16 Polarization: -4.56 SS G_CDS: -2.50 Total: -7.05 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.30 -9.67 -37.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260061751.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.218 kcal (2) G-P(sol) polarization free energy of solvation -28.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds