Wall clock time and date at job start Mon Mar 30 2020 06:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99775 * 2 1 4 4 H 1.48503 * 109.46839 * 269.99847 * 3 2 1 5 5 H 1.48502 * 109.46913 * 150.00588 * 3 2 1 6 6 H 1.48496 * 109.47362 * 30.00192 * 3 2 1 7 7 C 1.37877 * 120.00315 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00007 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00115 * 179.97438 * 7 2 1 10 10 H 1.09003 * 109.46257 * 60.02408 * 9 7 2 11 11 C 1.53030 * 109.46501 * 300.05124 * 9 7 2 12 12 C 1.53116 * 109.28256 * 180.80413 * 11 9 7 13 13 C 1.53123 * 109.15807 * 57.65366 * 12 11 9 14 14 C 1.53037 * 109.28101 * 302.34527 * 13 12 11 15 15 N 1.46845 * 109.51788 * 59.17898 * 14 13 12 16 16 C 1.46901 * 111.00019 * 174.16089 * 15 14 13 17 17 C 1.52999 * 109.47255 * 277.22393 * 16 15 14 18 18 H 1.08999 * 109.60427 * 306.78110 * 17 16 15 19 19 C 1.52941 * 109.60488 * 186.45512 * 17 16 15 20 20 C 1.53716 * 112.48959 * 209.96845 * 19 17 16 21 21 S 1.83397 * 104.96859 * 2.82651 * 20 19 17 22 22 C 1.55162 * 109.60319 * 67.10142 * 17 16 15 23 23 H 0.97002 * 120.00068 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.50527 * 300.74995 * 11 9 7 25 25 H 1.09002 * 109.50632 * 60.86431 * 11 9 7 26 26 H 1.09002 * 109.52216 * 297.75074 * 12 11 9 27 27 H 1.08998 * 109.58008 * 177.58986 * 12 11 9 28 28 H 1.09002 * 109.50217 * 182.40465 * 13 12 11 29 29 H 1.09003 * 109.53657 * 62.31074 * 13 12 11 30 30 H 1.09000 * 109.46127 * 299.16840 * 14 13 12 31 31 H 1.09002 * 109.46296 * 179.19494 * 14 13 12 32 32 H 1.09007 * 109.46704 * 37.21944 * 16 15 14 33 33 H 1.08995 * 109.47431 * 157.22184 * 16 15 14 34 34 H 1.08994 * 108.88710 * 330.76127 * 19 17 16 35 35 H 1.09000 * 108.88909 * 89.32107 * 19 17 16 36 36 H 1.08997 * 110.33759 * 121.69742 * 20 19 17 37 37 H 1.08997 * 110.34042 * 243.95213 * 20 19 17 38 38 H 1.09000 * 111.12966 * 279.28005 * 22 17 16 39 39 H 1.09001 * 111.12992 * 43.46063 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 3.5467 1.4402 0.6999 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 1 3.8750 -0.6806 0.8891 11 6 4.0210 -0.4711 -1.2500 12 6 5.5520 -0.4910 -1.2566 13 6 6.0358 -1.9430 -1.2079 14 6 5.4681 -2.6232 0.0399 15 7 4.0009 -2.5785 -0.0016 16 6 3.4193 -3.3427 1.1100 17 6 3.3711 -4.8263 0.7389 18 1 2.8609 -4.9478 -0.2166 19 6 2.6219 -5.6024 1.8231 20 6 3.1178 -7.0511 1.9581 21 16 4.5041 -7.1904 0.7655 22 6 4.8153 -5.3834 0.6323 23 1 -0.4850 0.8401 0.0004 24 1 3.6466 -0.9758 -2.1408 25 1 3.6705 0.5610 -1.2416 26 1 5.9270 0.0473 -0.3862 27 1 5.9196 -0.0149 -2.1656 28 1 7.1250 -1.9625 -1.1692 29 1 5.6938 -2.4713 -2.0979 30 1 5.8222 -2.1032 0.9300 31 1 5.7991 -3.6613 0.0701 32 1 4.0325 -3.2110 2.0016 33 1 2.4090 -2.9847 1.3078 34 1 2.7555 -5.0933 2.7775 35 1 1.5602 -5.6166 1.5770 36 1 3.4704 -7.2378 2.9724 37 1 2.3225 -7.7496 1.6979 38 1 5.2627 -5.1339 -0.3299 39 1 5.4352 -5.0284 1.4556 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260061751.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:53 Heat of formation + Delta-G solvation = -17.000044 kcal Electronic energy + Delta-G solvation = -17989.009250 eV Core-core repulsion = 15442.547404 eV Total energy + Delta-G solvation = -2546.461845 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.29637 -37.52924 -34.89727 -33.93773 -32.18475 -30.42827 -28.18646 -26.98647 -24.78005 -23.61835 -22.45146 -21.02905 -20.36806 -18.91013 -17.72493 -17.20955 -16.67974 -15.80986 -15.68207 -15.34380 -15.12653 -14.89606 -14.75999 -14.27682 -14.05478 -13.96639 -13.39712 -13.00304 -12.91656 -12.77893 -12.45302 -12.40398 -12.29394 -12.03970 -11.82271 -11.63971 -11.56629 -11.40958 -11.06894 -10.86502 -10.64021 -10.53419 -8.97398 -8.68730 -8.29011 -6.30571 0.95569 1.28011 1.32472 1.40598 1.41936 2.30008 3.03067 3.15280 3.62339 3.84676 4.02146 4.06372 4.10539 4.15810 4.22042 4.28223 4.40855 4.54177 4.55458 4.61204 4.70036 4.76675 4.81115 4.85882 4.91360 5.02171 5.03254 5.08261 5.15836 5.20721 5.30988 5.35675 5.38305 5.54073 5.72489 6.05866 6.42956 6.73440 6.78226 7.34091 8.86773 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.025572 B = 0.006873 C = 0.005636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.699565 B = 4073.230315 C = 4967.304279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.016 3.984 3 Si 0.942 3.058 4 H -0.268 1.268 5 H -0.254 1.254 6 H -0.300 1.300 7 C -0.505 4.505 8 H 0.048 0.952 9 C 0.194 3.806 10 H -0.017 1.017 11 C -0.118 4.118 12 C -0.122 4.122 13 C -0.108 4.108 14 C 0.035 3.965 15 N -0.532 5.532 16 C 0.070 3.930 17 C -0.073 4.073 18 H 0.070 0.930 19 C -0.125 4.125 20 C -0.050 4.050 21 S -0.353 6.353 22 C -0.042 4.042 23 H 0.265 0.735 24 H 0.056 0.944 25 H 0.034 0.966 26 H 0.052 0.948 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.022 0.978 31 H 0.100 0.900 32 H 0.035 0.965 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.152 -8.356 2.716 14.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.181 4.181 3 Si 0.770 3.230 4 H -0.194 1.194 5 H -0.178 1.178 6 H -0.227 1.227 7 C -0.543 4.543 8 H 0.066 0.934 9 C 0.086 3.914 10 H 0.001 0.999 11 C -0.156 4.156 12 C -0.160 4.160 13 C -0.145 4.145 14 C -0.092 4.092 15 N -0.256 5.256 16 C -0.059 4.059 17 C -0.095 4.095 18 H 0.088 0.912 19 C -0.164 4.164 20 C -0.198 4.198 21 S -0.126 6.126 22 C -0.189 4.189 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.093 0.907 28 H 0.108 0.892 29 H 0.085 0.915 30 H 0.040 0.960 31 H 0.118 0.882 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.131 0.869 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.391 -9.469 1.766 15.695 hybrid contribution -0.764 2.384 1.163 2.761 sum 11.628 -7.084 2.929 13.927 Atomic orbital electron populations 1.70018 1.07883 1.27792 1.52888 1.25680 0.95343 1.02385 0.94705 0.85956 0.78935 0.79604 0.78531 1.19405 1.17827 1.22747 1.21278 0.90732 0.93202 1.49079 0.93369 1.19429 0.93214 0.86273 0.92453 0.99922 1.21892 0.95984 0.98028 0.99720 1.21653 0.94529 0.98036 1.01733 1.21545 1.00416 0.94526 0.98052 1.22629 0.87520 1.01891 0.97194 1.61709 1.06600 1.13127 1.44214 1.22053 1.00407 0.92208 0.91271 1.21912 0.93843 0.94183 0.99516 0.91172 1.21954 1.01238 0.93391 0.99798 1.23931 0.96727 0.99075 1.00066 1.87815 1.47388 1.15174 1.62246 1.24669 0.99293 0.89066 1.05880 0.92626 0.92493 0.94774 0.92875 0.90743 0.89194 0.91531 0.95998 0.88205 0.94647 0.91620 0.90269 0.90510 0.87686 0.87542 0.86942 0.88425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.18 13.96 21.45 0.30 -57.88 16 2 C 0.02 0.94 5.45 84.66 0.46 1.40 16 3 Si 0.94 44.77 24.36 68.60 1.67 46.44 16 4 H -0.27 -12.21 6.87 99.48 0.68 -11.53 16 5 H -0.25 -11.35 6.53 99.48 0.65 -10.71 16 6 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 7 C -0.50 -27.92 8.12 25.60 0.21 -27.71 16 8 H 0.05 2.95 6.82 -2.91 -0.02 2.93 16 9 C 0.19 8.85 1.42 44.19 0.06 8.91 16 10 H -0.02 -0.80 7.20 -2.39 -0.02 -0.81 16 11 C -0.12 -4.92 4.84 30.64 0.15 -4.77 16 12 C -0.12 -3.85 6.00 30.67 0.18 -3.67 16 13 C -0.11 -2.92 6.09 30.65 0.19 -2.73 16 14 C 0.04 1.05 5.08 86.33 0.44 1.49 16 15 N -0.53 -20.25 4.37 -875.52 -3.82 -24.07 16 16 C 0.07 2.49 4.23 86.30 0.36 2.86 16 17 C -0.07 -2.16 2.76 -10.07 -0.03 -2.19 16 18 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 19 C -0.12 -3.08 5.86 30.82 0.18 -2.90 16 20 C -0.05 -1.06 7.38 72.22 0.53 -0.52 16 21 S -0.35 -9.05 23.22 -56.49 -1.31 -10.36 16 22 C -0.04 -1.04 4.90 72.72 0.36 -0.69 16 23 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 24 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 25 H 0.03 1.50 3.29 -2.39 -0.01 1.49 16 26 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.10 2.47 3.84 -2.39 -0.01 2.46 16 32 H 0.04 1.16 7.84 -2.38 -0.02 1.14 16 33 H 0.07 2.85 5.65 -2.39 -0.01 2.84 16 34 H 0.08 1.85 7.80 -2.39 -0.02 1.83 16 35 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.11 2.80 6.62 -2.39 -0.02 2.78 16 39 H 0.10 2.20 7.75 -2.39 -0.02 2.18 16 Total: -1.00 -63.06 295.09 0.87 -62.19 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 0.94 Total: 14.20 kcal Atomic # 6 Polarization: -33.62 SS G_CDS: 3.10 Total: -30.53 kcal Atomic # 7 Polarization: -78.43 SS G_CDS: -3.52 Total: -81.95 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.67 Total: 46.44 kcal Atomic # 16 Polarization: -9.05 SS G_CDS: -1.31 Total: -10.36 kcal Total: -63.06 0.87 -62.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260061751.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.191 kcal (2) G-P(sol) polarization free energy of solvation -63.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds