Wall clock time and date at job start Mon Mar 30 2020 06:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86797 * 119.99975 * 2 1 4 4 H 1.48491 * 109.47267 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47302 * 300.00415 * 3 2 1 6 6 H 1.48501 * 109.47059 * 60.00303 * 3 2 1 7 7 C 1.37873 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00029 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00068 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.45395 * 300.02047 * 9 7 2 11 11 C 1.53029 * 109.46759 * 59.99831 * 9 7 2 12 12 C 1.53113 * 109.28286 * 179.19708 * 11 9 7 13 13 C 1.53124 * 109.16145 * 302.34436 * 12 11 9 14 14 C 1.53037 * 109.27423 * 57.65174 * 13 12 11 15 15 N 1.46848 * 109.52691 * 300.82101 * 14 13 12 16 16 C 1.46893 * 111.00391 * 185.84231 * 15 14 13 17 17 C 1.52998 * 109.47208 * 79.51024 * 16 15 14 18 18 H 1.09004 * 109.60501 * 52.76572 * 17 16 15 19 19 C 1.53859 * 109.61126 * 172.92387 * 17 16 15 20 20 C 1.55133 * 106.89947 * 167.17600 * 19 17 16 21 21 S 1.83458 * 102.20616 * 317.88957 * 20 19 17 22 22 C 1.54276 * 109.61197 * 292.42896 * 17 16 15 23 23 H 0.97000 * 119.99852 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.50420 * 59.25001 * 11 9 7 25 25 H 1.09009 * 109.50239 * 299.13653 * 11 9 7 26 26 H 1.09001 * 109.52821 * 182.43594 * 12 11 9 27 27 H 1.09007 * 109.52537 * 62.24616 * 12 11 9 28 28 H 1.09000 * 109.50160 * 297.71312 * 13 12 11 29 29 H 1.09001 * 109.53452 * 177.61082 * 13 12 11 30 30 H 1.08995 * 109.46630 * 60.84221 * 14 13 12 31 31 H 1.09009 * 109.45928 * 180.80712 * 14 13 12 32 32 H 1.08999 * 109.47614 * 199.51271 * 16 15 14 33 33 H 1.09004 * 109.46888 * 319.51450 * 16 15 14 34 34 H 1.08994 * 109.97527 * 286.54374 * 19 17 16 35 35 H 1.09000 * 109.96875 * 47.82088 * 19 17 16 36 36 H 1.08995 * 110.86019 * 199.70657 * 20 19 17 37 37 H 1.09000 * 111.03262 * 76.14536 * 20 19 17 38 38 H 1.08993 * 110.40263 * 330.91599 * 22 17 16 39 39 H 1.09004 * 110.40083 * 93.33306 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.6239 -2.5570 0.8879 11 6 0.3718 -2.5792 -1.2516 12 6 -0.3764 -3.9151 -1.2587 13 6 0.6390 -5.0601 -1.2085 14 6 1.5106 -4.9081 0.0402 15 7 2.2056 -3.6152 -0.0008 16 6 3.1569 -3.4933 1.1118 17 6 4.4361 -4.2624 0.7755 18 1 4.8131 -3.9387 -0.1947 19 6 5.4994 -3.9929 1.8544 20 6 6.6295 -5.0347 1.6441 21 16 5.6837 -6.5698 1.3053 22 6 4.1356 -5.7750 0.7359 23 1 -0.4850 0.8401 0.0004 24 1 0.9970 -2.5075 -2.1416 25 1 -0.3469 -1.7597 -1.2441 26 1 -0.9708 -3.9950 -2.1688 27 1 -1.0311 -3.9706 -0.3889 28 1 1.2684 -5.0275 -2.0978 29 1 0.1118 -6.0134 -1.1705 30 1 0.8822 -4.9547 0.9296 31 1 2.2441 -5.7139 0.0713 32 1 3.3964 -2.4420 1.2717 33 1 2.7121 -3.9064 2.0171 34 1 5.8970 -2.9843 1.7417 35 1 5.0624 -4.1126 2.8458 36 1 7.2320 -5.1412 2.5461 37 1 7.2540 -4.7676 0.7916 38 1 3.3141 -6.0170 1.4100 39 1 3.8991 -6.0889 -0.2809 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260061754.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:55 Heat of formation + Delta-G solvation = -8.602894 kcal Electronic energy + Delta-G solvation = -17932.106287 eV Core-core repulsion = 15386.008569 eV Total energy + Delta-G solvation = -2546.097718 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.62474 -36.13755 -32.98302 -32.37617 -29.94948 -28.91844 -26.63218 -25.21399 -23.39052 -21.71640 -21.04159 -19.88385 -18.60943 -16.81350 -16.27862 -15.48508 -15.07098 -14.36047 -14.22141 -13.74953 -13.50149 -13.34692 -12.95851 -12.64095 -12.46502 -12.24550 -11.94066 -11.57580 -11.48493 -11.01957 -10.96644 -10.73439 -10.58457 -10.51291 -10.43339 -10.21393 -10.02659 -9.72575 -9.62408 -9.06915 -8.77305 -8.43776 -7.61486 -7.21639 -6.06176 -4.11085 1.97201 2.50779 3.25186 3.33856 3.36713 4.35276 4.62786 4.77491 5.01251 5.10270 5.24257 5.27905 5.40788 5.55796 5.62252 5.68965 5.78285 5.81717 5.85915 5.94536 6.04810 6.17584 6.19894 6.36356 6.39750 6.51049 6.59168 6.71314 6.80374 6.87207 7.10563 7.25823 7.55684 7.70591 7.78400 8.17299 8.30457 8.56849 8.95838 9.53939 11.00047 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.020411 B = 0.007172 C = 0.005475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.451216 B = 3903.248405 C = 5112.467086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.894 3.106 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.507 4.507 8 H 0.064 0.936 9 C 0.219 3.781 10 H -0.003 1.003 11 C -0.104 4.104 12 C -0.123 4.123 13 C -0.111 4.111 14 C 0.040 3.960 15 N -0.532 5.532 16 C 0.068 3.932 17 C -0.090 4.090 18 H 0.089 0.911 19 C -0.123 4.123 20 C -0.064 4.064 21 S -0.332 6.332 22 C -0.052 4.052 23 H 0.260 0.740 24 H 0.042 0.958 25 H 0.093 0.907 26 H 0.043 0.957 27 H 0.046 0.954 28 H 0.062 0.938 29 H 0.047 0.953 30 H 0.018 0.982 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.022 0.978 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.808 -8.400 1.755 10.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.722 3.278 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.545 4.545 8 H 0.082 0.918 9 C 0.114 3.886 10 H 0.015 0.985 11 C -0.143 4.143 12 C -0.161 4.161 13 C -0.149 4.149 14 C -0.089 4.089 15 N -0.256 5.256 16 C -0.062 4.062 17 C -0.110 4.110 18 H 0.108 0.892 19 C -0.162 4.162 20 C -0.212 4.212 21 S -0.106 6.106 22 C -0.199 4.199 23 H 0.070 0.930 24 H 0.061 0.939 25 H 0.111 0.889 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.036 0.964 31 H 0.090 0.910 32 H 0.117 0.883 33 H 0.040 0.960 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.219 -9.414 1.430 11.949 hybrid contribution -0.449 1.980 0.579 2.111 sum 6.770 -7.434 2.009 10.253 Atomic orbital electron populations 1.69901 1.05893 1.26433 1.50711 1.24932 0.94857 0.99113 0.95188 0.86508 0.80077 0.83682 0.77553 1.19750 1.21006 1.21152 1.21208 0.93240 0.89815 1.50280 0.91754 1.19199 0.88949 0.87114 0.93385 0.98496 1.21628 0.99006 0.94969 0.98661 1.21687 0.97412 0.97192 0.99763 1.21537 0.97511 0.97483 0.98381 1.22449 0.96223 0.93682 0.96509 1.61941 1.19036 1.02114 1.42543 1.22057 0.90958 1.01575 0.91614 1.22050 0.96566 0.92347 1.00027 0.89240 1.22597 0.94117 0.99265 1.00254 1.24180 0.99279 0.93232 1.04548 1.87439 1.17793 1.17677 1.87730 1.24485 0.94395 0.97082 1.03985 0.92989 0.93882 0.88924 0.93798 0.93475 0.91932 0.93382 0.96380 0.91048 0.88326 0.95995 0.89568 0.90537 0.88509 0.89364 0.89128 0.88352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.66 11.33 55.43 0.63 -24.03 16 2 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 3 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.51 -13.21 7.59 -34.44 -0.26 -13.47 16 8 H 0.06 1.66 6.52 -52.48 -0.34 1.32 16 9 C 0.22 5.30 1.83 -68.88 -0.13 5.17 16 10 H 0.00 -0.07 8.14 -51.93 -0.42 -0.49 16 11 C -0.10 -2.44 5.14 -26.66 -0.14 -2.57 16 12 C -0.12 -2.39 6.00 -26.61 -0.16 -2.55 16 13 C -0.11 -1.91 6.09 -26.65 -0.16 -2.07 16 14 C 0.04 0.71 4.87 -3.83 -0.02 0.69 16 15 N -0.53 -10.75 4.39 -228.08 -1.00 -11.75 16 16 C 0.07 1.23 4.37 -3.83 -0.02 1.21 16 17 C -0.09 -1.33 2.79 -89.51 -0.25 -1.58 16 18 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 19 C -0.12 -1.54 5.78 -25.16 -0.15 -1.69 16 20 C -0.06 -0.74 7.38 38.29 0.28 -0.46 16 21 S -0.33 -4.61 23.26 -107.50 -2.50 -7.11 16 22 C -0.05 -0.73 4.86 37.83 0.18 -0.55 16 23 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 24 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 25 H 0.09 2.42 6.10 -51.92 -0.32 2.10 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 1.11 3.68 -51.92 -0.19 0.92 16 32 H 0.10 1.99 5.64 -51.93 -0.29 1.69 16 33 H 0.02 0.39 7.78 -51.93 -0.40 -0.01 16 34 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.08 0.95 8.11 -51.93 -0.42 0.53 16 36 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.09 1.29 6.65 -51.93 -0.35 0.94 16 39 H 0.10 1.40 7.19 -51.93 -0.37 1.02 16 LS Contribution 301.38 15.07 4.54 4.54 Total: -1.00 -26.94 301.38 -10.73 -37.67 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -6.47 Total: 1.42 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: -0.91 Total: -16.34 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: -0.37 Total: -35.78 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: -4.61 SS G_CDS: -2.50 Total: -7.11 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -26.94 -10.73 -37.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260061754.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.066 kcal (2) G-P(sol) polarization free energy of solvation -26.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds