Wall clock time and date at job start Mon Mar 30 2020 06:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86797 * 119.99975 * 2 1 4 4 H 1.48491 * 109.47267 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47302 * 300.00415 * 3 2 1 6 6 H 1.48501 * 109.47059 * 60.00303 * 3 2 1 7 7 C 1.37873 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00029 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00068 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.45395 * 300.02047 * 9 7 2 11 11 C 1.53029 * 109.46759 * 59.99831 * 9 7 2 12 12 C 1.53113 * 109.28286 * 179.19708 * 11 9 7 13 13 C 1.53124 * 109.16145 * 302.34436 * 12 11 9 14 14 C 1.53037 * 109.27423 * 57.65174 * 13 12 11 15 15 N 1.46848 * 109.52691 * 300.82101 * 14 13 12 16 16 C 1.46893 * 111.00391 * 185.84231 * 15 14 13 17 17 C 1.52998 * 109.47208 * 79.51024 * 16 15 14 18 18 H 1.09004 * 109.60501 * 52.76572 * 17 16 15 19 19 C 1.53859 * 109.61126 * 172.92387 * 17 16 15 20 20 C 1.55133 * 106.89947 * 167.17600 * 19 17 16 21 21 S 1.83458 * 102.20616 * 317.88957 * 20 19 17 22 22 C 1.54276 * 109.61197 * 292.42896 * 17 16 15 23 23 H 0.97000 * 119.99852 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.50420 * 59.25001 * 11 9 7 25 25 H 1.09009 * 109.50239 * 299.13653 * 11 9 7 26 26 H 1.09001 * 109.52821 * 182.43594 * 12 11 9 27 27 H 1.09007 * 109.52537 * 62.24616 * 12 11 9 28 28 H 1.09000 * 109.50160 * 297.71312 * 13 12 11 29 29 H 1.09001 * 109.53452 * 177.61082 * 13 12 11 30 30 H 1.08995 * 109.46630 * 60.84221 * 14 13 12 31 31 H 1.09009 * 109.45928 * 180.80712 * 14 13 12 32 32 H 1.08999 * 109.47614 * 199.51271 * 16 15 14 33 33 H 1.09004 * 109.46888 * 319.51450 * 16 15 14 34 34 H 1.08994 * 109.97527 * 286.54374 * 19 17 16 35 35 H 1.09000 * 109.96875 * 47.82088 * 19 17 16 36 36 H 1.08995 * 110.86019 * 199.70657 * 20 19 17 37 37 H 1.09000 * 111.03262 * 76.14536 * 20 19 17 38 38 H 1.08993 * 110.40263 * 330.91599 * 22 17 16 39 39 H 1.09004 * 110.40083 * 93.33306 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.6239 -2.5570 0.8879 11 6 0.3718 -2.5792 -1.2516 12 6 -0.3764 -3.9151 -1.2587 13 6 0.6390 -5.0601 -1.2085 14 6 1.5106 -4.9081 0.0402 15 7 2.2056 -3.6152 -0.0008 16 6 3.1569 -3.4933 1.1118 17 6 4.4361 -4.2624 0.7755 18 1 4.8131 -3.9387 -0.1947 19 6 5.4994 -3.9929 1.8544 20 6 6.6295 -5.0347 1.6441 21 16 5.6837 -6.5698 1.3053 22 6 4.1356 -5.7750 0.7359 23 1 -0.4850 0.8401 0.0004 24 1 0.9970 -2.5075 -2.1416 25 1 -0.3469 -1.7597 -1.2441 26 1 -0.9708 -3.9950 -2.1688 27 1 -1.0311 -3.9706 -0.3889 28 1 1.2684 -5.0275 -2.0978 29 1 0.1118 -6.0134 -1.1705 30 1 0.8822 -4.9547 0.9296 31 1 2.2441 -5.7139 0.0713 32 1 3.3964 -2.4420 1.2717 33 1 2.7121 -3.9064 2.0171 34 1 5.8970 -2.9843 1.7417 35 1 5.0624 -4.1126 2.8458 36 1 7.2320 -5.1412 2.5461 37 1 7.2540 -4.7676 0.7916 38 1 3.3141 -6.0170 1.4100 39 1 3.8991 -6.0889 -0.2809 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260061754.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:55 Heat of formation + Delta-G solvation = -22.960641 kcal Electronic energy + Delta-G solvation = -17932.728885 eV Core-core repulsion = 15386.008569 eV Total energy + Delta-G solvation = -2546.720316 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.17692 -37.45510 -34.90947 -33.83801 -31.57999 -30.24151 -28.05342 -27.07627 -24.64506 -23.33935 -22.60694 -21.16772 -20.25981 -18.52432 -17.66387 -16.91686 -16.67773 -15.93672 -15.45669 -15.36240 -15.04167 -14.64789 -14.35315 -14.24544 -13.89178 -13.74147 -13.32189 -12.91718 -12.86209 -12.76627 -12.50257 -12.25287 -12.24092 -11.98373 -11.86134 -11.72647 -11.65614 -11.38617 -11.04474 -10.69657 -10.53326 -10.40219 -8.90677 -8.68624 -8.09884 -6.21483 0.92903 1.40478 1.43260 1.45886 1.53737 2.42052 3.15725 3.27503 3.66417 3.84620 3.98830 4.14408 4.17069 4.22464 4.31961 4.36310 4.47000 4.61506 4.63852 4.72095 4.77334 4.84170 4.87024 4.88041 5.00610 5.06670 5.16410 5.17250 5.26206 5.34307 5.35567 5.48234 5.66007 5.77567 5.83267 6.30721 6.45074 6.79276 6.95079 7.47425 8.95554 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.020411 B = 0.007172 C = 0.005475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.451216 B = 3903.248405 C = 5112.467086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.012 3.988 3 Si 0.956 3.044 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.517 4.517 8 H 0.063 0.937 9 C 0.225 3.775 10 H -0.045 1.045 11 C -0.099 4.099 12 C -0.118 4.118 13 C -0.106 4.106 14 C 0.038 3.962 15 N -0.535 5.535 16 C 0.071 3.929 17 C -0.080 4.080 18 H 0.080 0.920 19 C -0.120 4.120 20 C -0.052 4.052 21 S -0.352 6.352 22 C -0.047 4.047 23 H 0.260 0.740 24 H 0.032 0.968 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.038 0.962 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.008 0.992 31 H 0.100 0.900 32 H 0.074 0.926 33 H 0.020 0.980 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.118 0.882 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.450 -9.449 1.659 12.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.187 4.187 3 Si 0.782 3.218 4 H -0.188 1.188 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.556 4.556 8 H 0.081 0.919 9 C 0.118 3.882 10 H -0.027 1.027 11 C -0.138 4.138 12 C -0.156 4.156 13 C -0.144 4.144 14 C -0.091 4.091 15 N -0.259 5.259 16 C -0.058 4.058 17 C -0.100 4.100 18 H 0.098 0.902 19 C -0.159 4.159 20 C -0.200 4.200 21 S -0.126 6.126 22 C -0.194 4.194 23 H 0.069 0.931 24 H 0.051 0.949 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.057 0.943 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.027 0.973 31 H 0.118 0.882 32 H 0.092 0.908 33 H 0.038 0.962 34 H 0.113 0.887 35 H 0.096 0.904 36 H 0.136 0.864 37 H 0.118 0.882 38 H 0.108 0.892 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.878 -10.481 1.337 13.801 hybrid contribution -0.951 2.288 0.642 2.559 sum 7.927 -8.193 1.978 11.571 Atomic orbital electron populations 1.70044 1.07251 1.27058 1.51662 1.25699 0.95606 1.02354 0.95043 0.85536 0.79256 0.79683 0.77356 1.18769 1.20938 1.20930 1.21507 0.93344 0.90972 1.49733 0.91858 1.18969 0.89099 0.88228 0.91868 1.02718 1.21446 0.98320 0.96364 0.97677 1.21617 0.97756 0.95911 1.00319 1.21535 0.96942 0.97876 0.98035 1.22595 0.96884 0.93013 0.96569 1.61943 1.18409 1.02094 1.43489 1.22015 0.92014 1.00735 0.91076 1.21916 0.95277 0.92465 1.00378 0.90159 1.22558 0.93822 1.00182 0.99339 1.24258 0.98695 0.90966 1.06076 1.87543 1.17932 1.19372 1.87783 1.24332 0.94809 0.96270 1.04036 0.93097 0.94900 0.92189 0.91923 0.94323 0.91567 0.90002 0.97336 0.88244 0.90772 0.96165 0.88721 0.90391 0.86383 0.88221 0.89247 0.88240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.63 11.33 21.45 0.24 -52.39 16 2 C 0.01 0.63 5.30 84.65 0.45 1.08 16 3 Si 0.96 42.83 29.54 68.60 2.03 44.86 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.52 -27.61 7.59 25.60 0.19 -27.42 16 8 H 0.06 3.32 6.52 -2.91 -0.02 3.30 16 9 C 0.23 11.22 1.83 44.19 0.08 11.31 16 10 H -0.04 -2.55 8.14 -2.39 -0.02 -2.57 16 11 C -0.10 -4.77 5.14 30.64 0.16 -4.61 16 12 C -0.12 -4.55 6.00 30.67 0.18 -4.36 16 13 C -0.11 -3.43 6.09 30.65 0.19 -3.24 16 14 C 0.04 1.29 4.87 86.33 0.42 1.71 16 15 N -0.54 -21.67 4.39 -875.52 -3.84 -25.51 16 16 C 0.07 2.57 4.37 86.30 0.38 2.95 16 17 C -0.08 -2.26 2.79 -10.07 -0.03 -2.29 16 18 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 19 C -0.12 -2.74 5.78 31.62 0.18 -2.56 16 20 C -0.05 -1.04 7.38 72.71 0.54 -0.51 16 21 S -0.35 -8.93 23.26 -56.49 -1.31 -10.25 16 22 C -0.05 -1.24 4.86 72.41 0.35 -0.88 16 23 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 24 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.06 3.26 6.10 -2.38 -0.01 3.24 16 26 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 28 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.10 2.86 3.68 -2.38 -0.01 2.85 16 32 H 0.07 3.04 5.64 -2.39 -0.01 3.03 16 33 H 0.02 0.73 7.78 -2.38 -0.02 0.71 16 34 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.08 1.78 8.11 -2.39 -0.02 1.76 16 36 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.09 2.37 6.65 -2.39 -0.02 2.36 16 39 H 0.10 2.59 7.19 -2.38 -0.02 2.57 16 Total: -1.00 -59.16 301.38 1.22 -57.94 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 1.01 Total: 14.18 kcal Atomic # 6 Polarization: -31.94 SS G_CDS: 3.09 Total: -28.84 kcal Atomic # 7 Polarization: -74.30 SS G_CDS: -3.60 Total: -77.90 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Atomic # 16 Polarization: -8.93 SS G_CDS: -1.31 Total: -10.25 kcal Total: -59.16 1.22 -57.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260061754.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.983 kcal (2) G-P(sol) polarization free energy of solvation -59.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds