Wall clock time and date at job start Mon Mar 30 2020 06:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 112.84791 * 2 1 4 4 C 1.53780 * 113.61448 * 228.80683 * 2 1 3 5 5 H 1.08998 * 113.61573 * 156.33794 * 4 2 1 6 6 C 1.50698 * 113.61520 * 25.42648 * 4 2 1 7 7 H 1.07998 * 120.00283 * 0.02562 * 6 4 2 8 8 C 1.37882 * 119.99697 * 180.02562 * 6 4 2 9 9 N 1.31514 * 120.00354 * 0.02562 * 8 6 4 10 10 Si 1.86802 * 119.99624 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47236 * 60.00191 * 10 8 6 12 12 H 1.48506 * 109.46929 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47171 * 300.00017 * 10 8 6 14 14 C 1.54056 * 86.98381 * 270.83408 * 4 2 1 15 15 C 1.53781 * 113.61570 * 131.19539 * 2 1 3 16 16 H 1.09001 * 113.61158 * 203.66754 * 15 2 1 17 17 N 1.46496 * 113.61098 * 334.48482 * 15 2 1 18 18 C 1.34783 * 119.99469 * 204.99878 * 17 15 2 19 19 O 1.21506 * 120.00059 * 359.97438 * 18 17 15 20 20 O 1.34640 * 119.99659 * 180.02562 * 18 17 15 21 21 C 1.45203 * 116.99906 * 180.02562 * 20 18 17 22 22 C 1.52993 * 109.47123 * 59.99664 * 21 20 18 23 23 C 1.52996 * 109.47287 * 180.02562 * 21 20 18 24 24 C 1.53008 * 109.46979 * 299.99951 * 21 20 18 25 25 H 1.08994 * 109.47220 * 309.66484 * 1 2 3 26 26 H 1.08998 * 109.47216 * 69.67165 * 1 2 3 27 27 H 1.09002 * 109.46563 * 189.66396 * 1 2 3 28 28 H 0.96996 * 119.99821 * 179.97438 * 9 8 6 29 29 H 1.08991 * 113.62178 * 220.02250 * 14 4 2 30 30 H 1.09005 * 113.68486 * 89.12713 * 14 4 2 31 31 H 0.96998 * 120.00710 * 25.00085 * 17 15 2 32 32 H 1.08997 * 109.47103 * 60.00127 * 22 21 20 33 33 H 1.08997 * 109.47319 * 180.02562 * 22 21 20 34 34 H 1.08996 * 109.47484 * 300.00381 * 22 21 20 35 35 H 1.08999 * 109.47388 * 59.99666 * 23 21 20 36 36 H 1.08992 * 109.47578 * 180.02562 * 23 21 20 37 37 H 1.09002 * 109.47003 * 300.00099 * 23 21 20 38 38 H 1.09003 * 109.46880 * 59.99653 * 24 21 20 39 39 H 1.08997 * 109.46961 * 179.97438 * 24 21 20 40 40 H 1.09002 * 109.47018 * 300.00439 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9533 1.0045 0.0000 4 6 2.1461 -0.9280 -1.0603 5 1 3.1591 -0.6485 -1.3496 6 6 1.2453 -1.1752 -2.2429 7 1 0.2693 -0.7145 -2.2839 8 6 1.6672 -1.9895 -3.2724 9 7 2.8554 -2.5509 -3.2223 10 14 0.5508 -2.2953 -4.7387 11 1 0.2441 -1.0042 -5.4051 12 1 1.2330 -3.1983 -5.7003 13 1 -0.7116 -2.9261 -4.2766 14 6 2.0931 -2.0425 0.0020 15 6 2.1461 -0.9280 1.0602 16 1 3.1592 -0.6484 1.3496 17 7 1.2712 -1.1667 2.2108 18 6 1.8022 -1.5068 3.4020 19 8 3.0065 -1.6160 3.5214 20 8 0.9981 -1.7266 4.4593 21 6 1.6391 -2.0888 5.7109 22 6 2.5871 -0.9678 6.1414 23 6 0.5729 -2.2976 6.7881 24 6 2.4326 -3.3832 5.5216 25 1 -0.3633 0.6559 0.7910 26 1 -0.3633 0.3570 -0.9636 27 1 -0.3632 -1.0131 0.1725 28 1 3.1520 -3.1240 -3.9464 29 1 2.9718 -2.6873 0.0026 30 1 1.1575 -2.6019 0.0034 31 1 0.3098 -1.0799 2.1154 32 1 2.0219 -0.0456 6.2761 33 1 3.0686 -1.2398 7.0806 34 1 3.3466 -0.8194 5.3738 35 1 -0.1022 -3.0964 6.4812 36 1 1.0540 -2.5690 7.7277 37 1 0.0073 -1.3757 6.9230 38 1 3.1921 -3.2349 4.7540 39 1 2.9141 -3.6548 6.4610 40 1 1.7572 -4.1819 5.2148 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260102080.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:32 Heat of formation + Delta-G solvation = -75.862692 kcal Electronic energy + Delta-G solvation = -19715.547901 eV Core-core repulsion = 16723.780709 eV Total energy + Delta-G solvation = -2991.767192 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.52530 -38.75466 -36.55142 -34.12138 -33.07323 -31.87938 -28.54108 -27.45134 -27.36704 -26.35634 -23.32406 -22.78168 -21.19879 -19.84211 -18.33904 -17.52416 -16.40109 -16.10530 -15.82066 -14.91291 -14.83410 -14.33679 -14.25099 -14.12914 -13.40180 -12.82250 -12.54305 -12.33556 -12.20602 -11.89601 -11.84244 -11.74313 -11.49891 -11.30630 -11.23430 -11.17470 -10.98100 -10.79671 -10.39178 -10.25115 -10.19026 -9.83658 -9.59939 -8.99768 -8.71312 -8.42035 -8.30538 -6.01603 -4.04311 2.52107 3.19970 3.31379 3.36968 3.38458 4.42111 4.51616 4.71470 4.74718 4.89870 5.26263 5.39623 5.40244 5.48985 5.59899 5.63267 5.70264 5.72767 5.80752 5.85389 5.92552 6.12047 6.24051 6.30145 6.31907 6.41243 6.62229 6.65261 6.71133 6.85762 6.99101 7.03234 7.29096 7.42911 7.73783 7.91955 8.00524 8.41724 8.77274 8.97347 9.59947 11.08594 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.041001 B = 0.004414 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.748643 B = 6342.630901 C = 6456.190182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 H 0.061 0.939 4 C 0.049 3.951 5 H 0.055 0.945 6 C -0.510 4.510 7 H 0.063 0.937 8 C 0.064 3.936 9 N -0.889 5.889 10 Si 0.888 3.112 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.277 1.277 14 C -0.133 4.133 15 C 0.127 3.873 16 H 0.104 0.896 17 N -0.692 5.692 18 C 0.644 3.356 19 O -0.576 6.576 20 O -0.371 6.371 21 C 0.136 3.864 22 C -0.183 4.183 23 C -0.140 4.140 24 C -0.184 4.184 25 H 0.033 0.967 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.261 0.739 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.402 0.598 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.075 1.687 16.426 17.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.139 4.139 3 H 0.079 0.921 4 C 0.030 3.970 5 H 0.073 0.927 6 C -0.548 4.548 7 H 0.081 0.919 8 C -0.138 4.138 9 N -0.526 5.526 10 Si 0.716 3.284 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.172 4.172 15 C 0.025 3.975 16 H 0.122 0.878 17 N -0.349 5.349 18 C 0.397 3.603 19 O -0.466 6.466 20 O -0.286 6.286 21 C 0.099 3.901 22 C -0.240 4.240 23 C -0.197 4.197 24 C -0.241 4.241 25 H 0.052 0.948 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.238 0.762 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.109 0.891 39 H 0.085 0.915 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.348 1.491 16.458 16.861 hybrid contribution -0.888 -0.322 -0.801 1.239 sum -4.236 1.169 15.657 16.262 Atomic orbital electron populations 1.21422 0.94852 1.00663 1.00981 1.22934 0.95989 0.97879 0.97142 0.92103 1.19835 0.96772 0.89700 0.90740 0.92697 1.21034 1.01792 1.28885 1.03117 0.91853 1.25020 0.94914 0.95854 0.98008 1.69958 1.18288 1.31538 1.32847 0.86727 0.80861 0.78125 0.82660 1.20270 1.21397 1.20302 1.23569 1.00694 0.97454 0.95531 1.23080 0.93681 0.99802 0.80981 0.87799 1.45159 1.11339 1.71456 1.06970 1.18275 0.84004 0.76822 0.81228 1.90854 1.13786 1.57586 1.84332 1.86293 1.40696 1.82633 1.19013 1.21960 0.92883 0.95066 0.80200 1.22506 1.00714 0.97712 1.03049 1.21844 0.98354 1.02927 0.96562 1.22518 1.01712 0.95998 1.03861 0.94792 0.91378 0.92710 0.92963 0.92988 0.91274 0.76221 0.92374 0.91487 0.89214 0.91565 0.90430 0.91643 0.89130 0.91509 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.11 7.35 37.16 0.27 -1.83 16 2 C -0.12 -2.32 4.43 -89.80 -0.40 -2.72 16 3 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 4 C 0.05 1.16 3.39 -90.82 -0.31 0.85 16 5 H 0.05 1.44 8.13 -51.93 -0.42 1.01 16 6 C -0.51 -13.29 8.25 -34.44 -0.28 -13.57 16 7 H 0.06 1.59 5.76 -52.49 -0.30 1.29 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -25.46 13.28 55.43 0.74 -24.72 16 10 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 14 C -0.13 -2.97 7.09 -25.77 -0.18 -3.16 16 15 C 0.13 2.44 4.11 -67.12 -0.28 2.16 16 16 H 0.10 2.09 7.46 -51.93 -0.39 1.70 16 17 N -0.69 -11.79 5.25 -57.93 -0.30 -12.10 16 18 C 0.64 11.27 8.06 54.06 0.44 11.70 16 19 O -0.58 -11.23 11.48 -19.28 -0.22 -11.45 16 20 O -0.37 -5.65 9.94 -40.32 -0.40 -6.05 16 21 C 0.14 1.70 1.13 -90.62 -0.10 1.60 16 22 C -0.18 -2.19 8.37 37.15 0.31 -1.88 16 23 C -0.14 -1.28 8.85 37.16 0.33 -0.96 16 24 C -0.18 -2.30 8.37 37.16 0.31 -1.99 16 25 H 0.03 0.49 8.11 -51.93 -0.42 0.07 16 26 H 0.07 1.23 6.59 -51.93 -0.34 0.89 16 27 H 0.05 0.95 6.72 -51.93 -0.35 0.60 16 28 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.07 1.57 7.60 -51.93 -0.39 1.17 16 31 H 0.40 6.13 6.95 -40.82 -0.28 5.84 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 1.32 5.88 -51.93 -0.31 1.02 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.09 1.40 5.88 -51.93 -0.31 1.10 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 316.34 15.07 4.77 4.77 Total: -1.00 -28.93 316.34 -6.89 -35.82 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -6.45 Total: 6.08 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: 0.01 Total: -8.16 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.43 Total: -36.82 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.62 Total: -17.50 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.93 -6.89 -35.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260102080.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.047 kcal (2) G-P(sol) polarization free energy of solvation -28.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds